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DOE OSTI2014

CLO: The cell line ontology

Cell lines have been widely used in biomedical research. The community-based Cell Line Ontology (CLO) is a member of the OBO Foundry library that covers the domain of cell lines. Since its publication two years ago, significant updates have been made, including new groups joining the CLO consortium, new cell line cells, upper level alignment with the Cell Ontology (CL) and the Ontology for Biomedical Investigation, and logical extensions. Collaboration among the CLO, CL, and OBI has established consensus definitions of cell line-specific terms such as ‘cell line’, ‘cell line cell’, ‘cell line culturing’, and ‘mortal’ vs. ‘immortal cell line cell’. A cell line is a genetically stable cultured cell population that contains individual cell line cells. The hierarchical structure of the CLO is built based on the hierarchy of the in vivo cell types defined in CL and tissue types (from which cell line cells are derived) defined in the UBERON cross-species anatomy ontology. The new hierarchical structure makes it easier to browse, query, and perform automated classification. We have recently added classes representing more than 2,000 cell line cells from the RIKEN BRC Cell Bank to CLO. Overall, the CLO now contains ~38,000 classes of specific cell line cells derived from over 200 in vivo cell types from various organisms. The CLO has been applied to different biomedical research studies. Example case studies include annotation and analysis of EBI ArrayExpress data, bioassays, and host-vaccine/pathogen interaction. CLO’s utility goes beyond a catalogue of cell line types. The alignment of the CLO with related ontologies combined with the use of ontological reasoners will support sophisticated inferencing to advance translational informatics development.

59 BASIC BIOLOGICAL SCIENCES↗

NASA NTRS1999

Dynamics of the Molten Contact Line

The purpose of this program is to develop a basic understanding of how a molten material front spreads over a solid that is below its melting point, arrests, and freezes. Our hope is that the work will contribute toward a scientific knowledge base for certain new applications involving molten droplet deposition, including the "printing" of arbitrary three-dimensional objects by precise deposition of individual molten microdrops that solidify after impact. Little information is available at this time on the capillarity-driven motion and arrest of molten contact line regions. Schiaffino and Sonin investigated the arrest of the contact line of a molten microcrystalline wax spreading over a subcooled solid "target" of the same material. They found that contact line arrest takes place at an apparent liquid contact angle that depends primarily on the Stefan number S=c(T(sub f) -T(sub t)/L based on the temperature difference between the fusion point and the target temperature, and proposed that contact line arrest occurs when the liquid's dynamic contact angle approaches the angle of attack of the solidification front just behind the contact line. They also showed, however, that the conventional continuum equations and boundary conditions have no meaningful solution for this angle. The solidification front angle is determined by the heat flux just behind the contact line, and the heat flux is singular at that point. By comparing experiments with numerical computations, Schiaffino and Sonin estimated that the conventional solidification model must break down within a distance of order 0.1 - 1 microns of the contact line. The physical mechanism for this breakdown is as yet undetermined, and no first-principles theory exists for the contact angle at arrest. Schiaffino and Sonin also presented a framework for understanding how to moderate Weber number molten droplet deposition in terms of similarity laws and experimentation. The study is based on experiments with three molten materials- molten wax on solid wax, water on ice, and mercury on frozen mercury- which between them span a considerable range of the deposition/solidification similarity parameters. Correlations are obtained for the spreading velocity, spreading time scales, the spreading factor (i.e. ratio of deposited drop's final footprint radius and the drop's initial radius), post-spreading liquid oscillation amplitudes and time scales, and bulk solidification time scales. Duthaler carried out an experimental and theoretical investigation of the relationship between the liquid's apparent contact angle and the Capillary number Ca=mu U/sigma based on contact line speed, for molten materials spreading over subcooled solids. This relationship is required for modeling of melt spreading. We have adapted Voinov's methodology to the molten contact line and formulated a theoretical model for the Ca vs. contact angle relationship, based Schiaffino and Sonin#s (1997a,b) wedge-like solidification front model. With the solidification front angle taken from Schiaffino and Sonin, the model is in good agreement with the experimental results for Ca vs. contact angle. Duthaler also extended the experimental investigation of droplet deposition and contact line freezing to more materials, including solder on glass, solder on solder, water on ice, and molten microcrystalline wax on wax. The latter also included tests on inclined targets. Deposition tests have also been done with molten octacosane (C28H58) on various targets. An important objective of our program has been the development of micron-scale sensors for measuring the transient temperature at a point on the substrate surface as a molten contact line moves over it. The expectation is that this temperature history will yield a better understanding of the thermal process in the contact line region. The sensors are of the thermistor type, either 2.5 microns or 1.5 microns square, microfabricated with silicon-based technology on either pure silicon or amorphous silicon dioxide chips. Each chip has 32 sensors distributed on its surface in arrays. The time response is better than 10 ms. At the time of writing, sensor calibration is in progress. Results on thermal transients during contact line passage will be discussed at the conference. While we expect that the data will provide information on the near-contact-line heat transfer process, we also foresee possible problems. First, the spatial resolution of the sensors may be insufficient to resolve the near-contact-line region. Second, the sensors protrude about 0.5 microns above the substrate surface, and may affect the contact line motion. Third, a sensor's temperature history depends on both the heat flux distribution into it from the fusion front and the thermal properties of the substrate below it and the solidified melt between it and the fusion front. The heat flux distribution in the contact line region must therefore be unfolded from computations of the overall system's transient thermal response.

Sonin, Ain A.↗

DOE OSTI2024

Hourly dynamic line ratings for existing transmission across the contiguous United States (preliminary results) [Slides]

The thermal rating of a transmission line depends on the rate at which heat generated by current flow through the line can be dissipated into the environment by convective and radiative cooling, keeping the conductor below a maximum operating temperature. Static or seasonal line ratings assume nearly-worst-case weather conditions (high ambient air temperature, high solar irradiance, and low wind speed), resulting in a low risk of "overrating" a line (i.e., allowing more current to flow than the line is designed for) but a high fraction of time when the line is "underrated" (i.e., able to flow more current while staying below the maximum temperature). Dynamic transmission line ratings (DLR) use real-time measurements of weather conditions, line sag, or line temperature to determine the thermal rating of transmission lines at hourly or higher time resolution, allowing for increased ratings during some (cold, windy, and/or dark) periods and correcting for overrating during other (hot, calm, and/or sunny) periods. Many studies have explored the benefits of DLR, but typically for small collections of transmission lines under a limited sample of weather conditions, leaving open the question of how widely applicable the benefits of DLR might be over diverse geographies and weather conditions. Here, we combine geospatial data on tens of thousands of transmission line routes across the contiguous United States with high-resolution hourly historical weather data for 2007-2013 to estimate the impact of DLR and other weather-adjusted rating systems. We compare static and dynamic line ratings to intermediate ratings adjusted by ambient temperature, day/night irradiance, clear-sky irradiance, and/or measured irradiance, illustrating the benefits of incorporating progressively more detailed weather data into the calculated line ratings. Moving from nighttime-adjusted ratings to clear-sky-adjusted ratings provides more benefit than moving from clear-sky-adjusted ratings to measured-irradiance-adjusted ratings. Depending on the assumed static windspeed for irradiance-adjusted-ratings, DLR either corrects for overrated hours or provides substantially increased ratings in the majority of hours on the majority of lines.

14 SOLAR ENERGY↗

DOE OSTI2014

Effects on calculated half-widths and shifts from the line coupling for asymmetric-top molecules

The refinement of the Robert-Bonamy formalism by considering the line coupling for linear molecules developed in our previous studies [Q. Ma, C. Boulet, and R. H. Tipping, J. Chem. Phys. 139, 034305 (2013); 140, 104304 (2014)] have been extended to asymmetric-top molecules. For H{sub 2}O immersed in N{sub 2} bath, the line coupling selection rules applicable for the pure rotational band to determine whether two specified lines are coupled or not are established. Meanwhile, because the coupling strengths are determined by relative importance of off-diagonal matrix elements versus diagonal elements of the operator −iS{sub 1} − S{sub 2}, quantitative tools are developed with which one is able to remove weakly coupled lines from consideration. By applying these tools, we have found that within reasonable tolerances, most of the H{sub 2}O lines in the pure rotational band are not coupled. This reflects the fact that differences of energy levels of the H{sub 2}O states are pretty large. But, there are several dozen strongly coupled lines and they can be categorized into different groups such that the line couplings occur only within the same groups. In practice, to identify those strongly coupled lines and to confine them into sub-linespaces are crucial steps in considering the line coupling. We have calculated half-widths and shifts for some groups, including the line coupling. Based on these calculations, one can conclude that for most of the H{sub 2}O lines, it is unnecessary to consider the line coupling. However, for several dozens of lines, effects on the calculated half-widths from the line coupling are small, but remain noticeable and reductions of calculated half-widths due to including the line coupling could reach to 5%. Meanwhile, effects on the calculated shifts are very significant and variations of calculated shifts could be as large as 25%.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

DOE OSTI2015

PROBING STELLAR ACCRETION WITH MID-INFRARED HYDROGEN LINES

In this paper we investigate the origin of the mid-infrared (IR) hydrogen recombination lines for a sample of 114 disks in different evolutionary stages (full, transitional, and debris disks) collected from the Spitzer archive. We focus on the two brighter H I lines observed in the Spitzer spectra, the H I (7-6) at 12.37 μm and the H I (9-7) at 11.32 μm. We detect the H I (7-6) line in 46 objects, and the H I (9-7) in 11. We compare these lines with the other most common gas line detected in Spitzer spectra, the [Ne II] at 12.81 μm. We argue that it is unlikely that the H I emission originates from the photoevaporating upper surface layers of the disk, as has been found for the [Ne II] lines toward low-accreting stars. Using the H I (9-7)/H I (7-6) line ratios we find these gas lines are likely probing gas with hydrogen column densities of 10{sup 10}-10{sup 11} cm{sup –3}. The subsample of objects surrounded by full and transitional disks show a positive correlation between the accretion luminosity and the H I line luminosity. These two results suggest that the observed mid-IR H I lines trace gas accreting onto the star in the same way as other hydrogen recombination lines at shorter wavelengths. A pure chromospheric origin of these lines can be excluded for the vast majority of full and transitional disks. We report for the first time the detection of the H I (7-6) line in eight young (<20 Myr) debris disks. A pure chromospheric origin cannot be ruled out in these objects. If the H I (7-6) line traces accretion in these older systems, as in the case of full and transitional disks, the strength of the emission implies accretion rates lower than 10{sup –10} M {sub ☉} yr{sup –1}. We discuss some advantages of extending accretion indicators to longer wavelengths, and the next steps required pinning down the origin of mid-IR hydrogen lines.

79 ASTRONOMY AND ASTROPHYSICS↗

NASA NTRS1989

Nitrogen abundances from UV lines of HgMn and standard late-B stars

A recent survey by Roby (1987) discovered that the relatively weak high excitation lines of N 1 near 7468 and 8680 A were undetectable in the majority of HgMn stars, leading to upper limits on the N abundance of roughly ten times below that of the solar N abundance. Standard stars with similar temperatures (10,000 to 13,000 K) did exhibit these same N lines and were found to have roughly solar N abundances. The N abundances were redetermined in two HgMn stars and four standard stars using the strong, low excitation lines of N 1 found in the ultraviolet. The observational data consisted of high quality, high resolution, co-added International Ultraviolet Explorer spectra which was previously collected and reduced. Examination of the spectra plus considerations of signal/noise and severe line blending led to the choice of three promising N 1 lines located at 1742.7, 1745.3 and 1411.9 A. The atomic data for these lines were previously calculated using the best laboratory measurements found in a search of the relevant literature. The chosen N lines turned out to be blended significantly with Fe 2 lines. To obtain the abundances for N synthetic spectra were computed to match the observed spectra. The synthetic spectra were calculated using lie-blanketed model atmospheres, stellar parameters, and abundances for the other elements based upon previous work by S. Adelman. The N abundance was then adjusted to give the best fit of the observed line profiles. In the 2 HgMn stars, the N lines were again found to be undetectable, but the stronger intrinsic strength of the new lines yield more stringent upper limits than those obtained previously. Model atmosphere and abundances were updated in two stars where new results were reported. An additional N 1 line and an additional standard star were added to the program. A line opacity model was developed for a missing feature adjacent to the N 1 line at 1745.2 A, leading to a 25 percent improvement in the determined from this line.

Roby, Scott W.↗

NASA NTRS1996

Spectra of High-Ionization Seyfert 1 Galaxies: Implications for the Narrow-Line Region

We present line profiles and profile parameters for the Narrow-Line Regions (NLRs) of six Seyfert 1 galaxies with high-ionization lines: MCG 8-11-11, Mrk 79, Mrk 704, Mrk 841, NGC 4151, and NGC 5548. The sample was chosen primarily with the goal of obtaining high-quality [Fe VII] lambda6087 and, when possible, [Fe X] lambda6374 profiles to determine if these lines are more likely formed in a physically distinct 'coronal line region' or are formed throughout the NLR along with lines of lower critical density (n(sub cr)) and/or Ionization Potential (IP). We discuss correlations of velocity shift and width with n(sub cr) and IP. In some objects, lines of high IP and/or n(sub cr) are systematically broader than those of low IP/n(sub cr). Of particular interest, however, are objects that show no correlations of line width with either IP or n(sub cr). In these objects, lines of high and low IP/n(sub cr), are remarkably similar, which is difficult to reconcile with the classical picture of the NLR, in which lines of high and low IP/n(sub cr) are formed in physically distinct regions. We argue for similar spatial extents for the flux in lines with similar profiles. Here, as well as in a modeling-oriented companion paper, we develop further an idea suggested by Moore & Cohen that objects that do and do not show line width correlations with IP/n(sub cr) can both be explained in terms of a single NLR model with only a small difference in the cloud column density distinguishing the two types of object. Overall, our objects do not show correlations between the Full Width at Half-Maximum (FWHM) and IP and/or n(sub cr). The width must be defined by a parameter that is sensitive to extended profile wings in order for the correlations to result. We present models in which FWHM correlations with IP and/or n(sub cr) result only after simulating the lower spectral resolution used in previous observational studies. The models that simulate the higher spectral resolution of our observational study produce line width correlations only if the width is defined by a parameter that is more sensitive to extended profile wings than is the FWHM. Our sample of six objects is in effect augmented by incorporating the larger sample (16 objects) of Veilleux into some of our discussion. This paper focuses on new interpretations of NLR emission-line spectra and line profiles that stem directly from the observations. Paper 2 focuses on modeling and complements this paper by illustrating explicitly the effects that spatial variations in electron density, ionization parameter, and column density have on model profiles. By comparing model profiles with the observed profiles presented here, as well as with those presented by Veilleux, Paper 2 yields insight into how the electron density, ionization parameter, and column density likely vary throughout the NLR.

Moore, David↗

NASA NTRS1996

The alpha Centauri Line of Sight: D/H Ratio, Physical Properties of Local Interstellar Gas, and Measurement of Heated Hydrogen (The 'Hydrogen Wall') Near the Heliopause

We analyze high-resolution spectra of the nearby (1.34 pc) stars alpha Cen A (G2 V) and alpha Cen B (K1 V), which were obtained with the Goddard High Resolution Spectrograph on the Hubble Space Telescope. The observations consist of echelle spectra of the Mg II 2800 A and Fe II 2599 A resonance lines and the Lyman-alpha lines of hydrogen and deuterium. The interstellar gas has a velocity (v = - 18.0 +/- 0.2 km/s) consistent with the local flow vector proposed for this line of sight by Lailement & Berlin (1992). The temperature and nonthermal velocity inferred from the Fe II, Mg II, and D I line profiles are T = 5400 +/- 500 K and xi = 1.20 +/- 0.25 km/s, respectively. However, single-component fits to the H I Lyman-alpha lines yield a Doppler parameter (b(sub HI) = 11.80 km/s) that implies a significantly warmer temperature of 8350 K, and the velocity of the H I absorption (v = - 15.8 +/- 0.2 km/s) is redshifted by about 2.2 km/s with respect to the Fe II, Mg II, and D I lines. The one-component model of the interstellar gas suggests natural logarithm N base HI = 18.03 +/- 0.01 and D/H = (5.7 +/- 0.2) x 10(exp -6) . These parameters lead to a good fit to the observed spectra, but this model does not explain the higher temperature and redshift of H I relative to the other interstellar lines. The most sensible way to resolve the discrepancy between H(I) and the other lines is to add a second absorption component to the H(I) lines. This second component is hotter (T approx. equals 30,000 K), is redshifted relative to the primary component by 2-4 km/s, and has a column density too low to be detected in the Fe(II), Mg(II), and D(I) lines. We propose that the gas responsible for this component is located near the heliopause, consisting of the heated H I gas from the interstellar medium that is compressed by the solar wind. This so-called 'hydrogen wall' is predicted by recent multifluid gasdynamical models of the interstellar gas and solar wind interaction. Our data provide the first measurements of the temperature and column density of H(I) in the hydrogen wall. After considering the effects that a corresponding hydrogen wall around alpha Cen would have on our analysis, our best estimates for the parameters of the solar hydrogen wall are natural log N(sup (2))(H(I)) = 14.74 +/- 0.24, b(sup (2))(H(I)) = 21.9 +/- 1.7 km/s (corresponding to T = 29,000 +/- 5000 K), and v(sup (2))(H(I)) greater than -16km/s. Unfortunately, the existence of this heated H(I) reduces our ability to compute the H(I) column density of the interstellar medium accurately because, with slight alterations to our assumed stellar Lyman-alpha profiles, we discovered that acceptable two-component fits also exist with natural log N(H(I))approx. 17.6. We, therefore, quote large error bars for the H I column density along the alpha Cen line of sight, natural log N(H(I)) = 17.80 +/- 0.30. For this range in N(H(I)), n(H(I)) = 0.15 /cu.cm (+/- a factor of 2) and D/H = (0.5-1.9) x 10(exp -5). This is the first direct measurement of the H(I) density in a local cloud and allows us to predict the distance from the Sun to the edge of the local cloud along various lines of sight. This range in D/H is consistent with the value D/H = 1.6 x 10(exp -5) previously derived for the Capella and Procyon lines of sight. We cannot tell whether D/H ratio varies or is constant in the local interstellar medium, but we do find that the D(I)/Mg(II) ratio for the alpha Cen line of sight is about 4 times smaller than for the Capella and Procyon lines of sight. Therefore, either D/H or the Mg depletion varies significantly over distance scales of only a few parsecs.

Linsky, Jeffrey L.↗

NASA NTRS2006

Precision Fe K-Alpha and Fe K-Beta Line Spectroscopy of the Seyfert 1.9 Galaxy NGC 2992 with Suzaku

We present detailed time-averaged X-ray spectroscopy in the 0.5-10 keV band of the Seyfert 1.9 galaxy NGC 2992 with the Suzaku X-ray Imaging Spectrometers (XIS). The source had a factor approximately 3 higher 2-10 keV flux (approximately 1.2 x l0(exp -11) erg per square cm per s) than the historical minimum and a factor approximately 7 less than the historical maximum. The XIS spectrum of NGC 2992 can be described by several components. There is a primary continuum, modeled as a power-law with a photon index of Gamma = 1.57(sup +0.06) (sup -0.03) that is obscured by a Compton-thin absorber with a column density of 8.01(sup +0.6) (sup -0.5)x l0 (exp 21) per square cm. . There is another, weaker, unabsorbed power-law component (modeled with the same slope as the primary), that is likely to be due to the primary continuum being electron-scattered into our line-of-sight by a region extended on a scale of hundreds of parsecs. We measure the Thomson depth of the scattering zone to be Tau = 0.072 +/- 0.021. An optically-thin thermal continuum emission component, which probably originates in the same extended region, is included in the model and yields a temperature and luminosity of KT = 0.656(sup +0.088) (sup -0.0.61) keV and approximately 1.2 +/- 0.4 x l0 (exp 40) erg per s respectively. We detect an Fe K emission complex which we model with broad and narrow lines and we show that the intensities of the two components are decoupled at a confidence level > 3 sigma. The broad Fe K alpha line has an equivalent width of 118(sup +32) (sup -61) eV and could originate in an accretion disk (with inclination angle greater than approximately 30 deg) around the putative central black hole. The narrow Fe K alpha line has an equivalent width of 1632(sup +47) (sup -26) eV and is unresolved (FWHM < 4630 km per s) and likely originates in distant matter. The absolute flux in the narrow line implies that the column density out of the line-of-sight could be much higher than measured in the line-of-sight, and that the mean (historically-averaged) continuum luminosity responsible for forming the line could be a factor of several higher than that measured from the data. We also detect the Fe K Beta line (corresponding to the narrow Fe K alpha line) with a high signal-to-noise ratio and describe a new robust method to constrain the ionization state of Fe responsible for the Fe K alpha and Fe K Beta lines that does not require any knowledge of possible gravitational and Doppler energy shifts affecting the line energies. For the distant line-emitting matter (e. g. the putative obscuring torus) we deduce that the predominant ionization state is lower than Fe VIII (at 99% confidence), conservatively taking into account residual calibration uncertainties in the XIS energy scale and theoretical and experimental uncertainties in the Fe K fluorescent line energies. From the limits on a possible Compton-reflection continuum it is likely that the narrow Fe K alpha and Fe K Beta lines originate in a Compton-thin structure.

Yaqoob, Tahir↗

NASA NTRS2014

Effects on Calculated Half-Widths and Shifts from the Line Coupling for Asymmetric-Top Molecules

The refinement of the Robert-Bonamy formalism by considering the line coupling for linear molecules developed in our previous studies [Q. Ma, C. Boulet, and R. H. Tipping, J. Chem. Phys. 139, 034305 (2013); 140, 104304 (2014)] have been extended to asymmetric-top molecules. For H2O immersed in N2 bath, the line coupling selection rules applicable for the pure rotational band to determine whether two specified lines are coupled or not are established. Meanwhile, because the coupling strengths are determined by relative importance of off-diagonal matrix elements versus diagonal elements of the operator -iS1 -S2, quantitative tools are developed with which one is able to remove weakly coupled lines from consideration. By applying these tools, we have found that within reasonable tolerances, most of the H2O lines in the pure rotational band are not coupled. This reflects the fact that differences of energy levels of the H2O states are pretty large. But, there are several dozen strongly coupled lines and they can be categorized into different groups such that the line couplings occur only within the same groups. In practice, to identify those strongly coupled lines and to confine them into sub-linespaces are crucial steps in considering the line coupling. We have calculated half-widths and shifts for some groups, including the line coupling. Based on these calculations, one can conclude that for most of the H2O lines, it is unnecessary to consider the line coupling. However, for several dozens of lines, effects on the calculated half-widths from the line coupling are small, but remain noticeable and reductions of calculated half-widths due to including the line coupling could reach to 5%. Meanwhile, effects on the calculated shifts are very significant and variations of calculated shifts could be as large as 25%.

formalism↗

DOE OSTI2015

FAR-INFRARED LINE SPECTRA OF SEYFERT GALAXIES FROM THE HERSCHEL-PACS SPECTROMETER

We observed the far-IR fine-structure lines of 26 Seyfert galaxies with the Herschel-PACS spectrometer. These observations are complemented with Spitzer Infrared Spectrograph and Herschel SPIRE spectroscopy. We used the ionic lines to determine electron densities in the ionized gas and the [C I] lines, observed with SPIRE, to measure the neutral gas densities, while the [O I] lines measure the gas temperature, at densities below ∼10{sup 4} cm{sup –3}. Using the [O I]145 μm/63 μm and [S III]33/18 μm line ratios, we find an anti-correlation of the temperature with the gas density. Various fine-structure line ratios show density stratifications in these active galaxies. On average, electron densities increase with the ionization potential of the ions. The infrared lines arise partly in the narrow line region, photoionized by the active galactic nucleus (AGN), partly in H II regions photoionized by hot stars, and partly in photo-dissociated regions. We attempt to separate the contributions to the line emission produced in these different regions by comparing our observed emission line ratios to theoretical values. In particular, we tried to separate the contribution of AGNs and star formation by using a combination of Spitzer and Herschel lines, and we found that besides the well-known mid-IR line ratios, the line ratio of [O III]88 μm/[O IV]26 μm can reliably discriminate the two emission regions, while the far-IR line ratio of [C II]157 μm/[O I]63 μm is only able to mildly separate the two regimes. By comparing the observed [C II]157 μm/[N II]205 μm ratio with photoionization models, we also found that most of the [C II] emission in the galaxies we examined is due to photodissociation regions.

79 ASTRONOMY AND ASTROPHYSICS↗

DOE OSTI2017

Monitor Variability of Millimeter Lines in IRC+10216

A single dish monitoring of millimeter maser lines SiS J = 14-13 and HCN ν{sub 2}=1{sup f} J = 3-2 and several other rotational lines is reported for the archetypal carbon star IRC+10216. Relative line strength variations of 5% ∼ 30% are found for eight molecular line features with respect to selected reference lines. Definite line-shape variations are found in limited velocity intervals of the SiS and HCN line profiles. The asymmetrical line profiles of the two lines are mainly due to the varying components. The dominant varying components of the line profiles have similar periods and phases to the IR light variation, though both quantities show some degree of velocity dependence; there is also variability asymmetry between the blue and red line wings of both lines. Combining the velocities and amplitudes with a wind velocity model, we suggest that the line profile variations are due to SiS and HCN masing lines emanating from the wind acceleration zone. The possible link of the variabilities to thermal, dynamical, and/or chemical processes within or under this region is also discussed.

79 ASTRONOMY AND ASTROPHYSICS↗

DOE OSTI2023

CLASS Survey Description: Coronal-line Needles in the SDSS Haystack

Coronal lines are a powerful, yet poorly understood, tool to identify and characterize active galactic nuclei. There have been few large-scale surveys of coronal lines in the general galaxy population in the literature so far. Using a novel preselection technique with a flux-to-rms ratio $\mathcal{F}$, followed by Markov Chain Monte Carlo fitting, we searched for the full suite of 20 coronal lines in the optical spectra of almost 1 million galaxies from the Sloan Digital Sky Survey Data Release 8. We present a catalog of the emission-line parameters for the resulting 258 galaxies with detections. The Coronal Line Activity Spectroscopic Survey includes line properties, host-galaxy properties, and selection criteria for all galaxies in which at least one line is detected. This comprehensive study reveals that a significant fraction of coronal-line activity is missed in past surveys based on a more limited set of coronal lines; ~60% of our sample do not display the more widely surveyed [Fe x] λ6374. In addition, we discover a strong correlation between coronal-line and Wide-field Infrared Survey Explorer W2 luminosities, suggesting that the mid-infrared flux can be used to predict coronal-line fluxes. For each line we also provide a confidence level that the line is present, generated by a novel neural network, trained on fully simulated data. We find that after training the network to detect individual lines using 100,000 simulated spectra, we achieve an overall true-positive rate of 75.49% and a false-positive rate of only 3.96%.

79 ASTRONOMY AND ASTROPHYSICS↗

NASA NTRS2002

No Compton Reflection In a Chandra/RXTE Observation of Mkn 509: Implications for the Fe-K Line Emission From Accreting X-Ray Sources

We report the results of simultaneous Chandra and RXTE observations of the Seyfert 1 galaxy Mkn 509. We deconvolve the broad and narrow Fe-K emission-line components for which we measure rest-frame equivalent widths of 119+/-18 eV and 57+/-13 eV respectively. The broad line has a FWHM of 57,600((sup 14,400)(sub -21,000)) km/s and the narrow line is unresolved, with an upper limit on the FWHM of 4,940 km/s. Both components must originate in cool matter since we measure rest-frame center energies of 6.36((sup +0.13)(sub -0.12)) keV and 6.42+/-0.01 keV for the broad and narrow line respectively. This rules out He-like and H-like Fe for the origin of both the broad and narrow lines. If, as is widely accepted, the broad Fe-K line originates in Thomson-thick matter (such as an accretion disk), then one expects to observe spectral curvature above approximately 10 keV, (commensurate with the observed broad line), characteristic of the Compton-reflection continuum. However our data sets very stringent limits on deviations of the observed continuum from a power law. Light travel-time delays cannot be invoked to explain anomalies in the relative strengths of the broad Ferry line and Compton-reflection continuum since they are supposed to originate in the same physical location. We are forced to conclude that both the broad and narrow Fe-K lines had to originate in Thomson-thin matter during our observation. This result, for a single observation of just one source, means that our understanding of Fe K line emission and Compton reflection from accreting X-ray sources in general needs to be re-examined. For example, if an irradiated accretion disk existed in Mkn 509 at the time of the observations, the lack of spectral curvature above approximately 10 keV suggests two possibilities. Either the disk was Thomson-thick and highly ionized, having negligible Fe-K line emission and photoelectric absorption or the disk was Thomson-thin producing some or all of the broad Fe-K line emission. In the former case, the broad Fe-K line had to have produced in a Thomson-thin region elsewhere. In both cases the predicted spectral curvature above approximately 10 keV is negligible. An additional implication of our results is that any putative obscuring torus in the system, required by unification models of active galaxies, must also be Thomson-thin. The same applies to the optical broad line region (BLR) if it has a substantial covering factor.

Yaqoob, Tahir↗

DOE OSTI2020

Sensitivity Effects of High Temperature Overhead Conductors to Line Rating Variables

For traditional overhead transmission lines, the maximum allowable conductor operating temperature on ASCR, AAC, or AAAC lines for determining the static line ratings can be quite low, typically well under 100 C. At these low temperatures, the primary driver for determining static line ratings are assumptions made about the wind speed and direction and the ambient temperature. Assumptions for solar loading and emitted thermal radiation, driven by line emissivity and absorptivity, are secondary factors, and only provide small changes to the static ratings. However, when considering newer high temperature conductors such as ACSS, ACCR, ZTACIR, and ACCC® the maximum allowable conductor temperatures can be significantly higher, up to 250° C. This higher temperature shifts the importance of the emissivity assumptions of the overhead transmission line, due to the nature of the T4 dependence of the radiative heat loss compared to the T1 dependence of the convective heat loss, as well as shifting the dependency on local wind conditions. Typical assumptions in the United States for the emissivity/absorptivity of overhead transmission lines in determining the static ratings are to use a value of 0.5 for both parameters or set a value in the range of 0.7 to 0.9. Recent experimental tests at EPRI have shown that higher emissivity aging assumptions may not be valid in some regions of the US, and that actual values may be much lower (0.25-0.45) than older studies have predicted (0.8-0.9). Here, the assumptions of different US Regional Transmission Operators (RTOs) and different utilities within RTOs are examined for the static ratings for traditional lower operating temperatures up to 100° C as well as with the higher maximum temperature conductors associated with newer conductor designs at 250° C. The sensitivity of the static ratings is examined at both lower and higher temperature conductors with respect to overhead line emissivity and absorptivity, wind speed, wind direction, and solar loading, and ambient temperature. It is shown that the effects of the conductor absorptivity, solar flux and ambient temperature on the static rating are increased when the transmission line has a lower maximum conductor temperature. The effects of the conductor emissivity, wind direction and wind speed have increased effects on the static rating when the transmission line has a higher maximum conductor temperature. In addition, example weather data is used to calculate the conductor temperature with different line emissivity and absorptivity assumptions. This shows the effect of assumptions made for emissivity only has a minor impact for low temperature lines, but for high temperature transmission lines can cause a 150-200° C temperature swing.

24 POWER TRANSMISSION AND DISTRIBUTION↗

DOE OSTI2015

THE FORMATION OF IRIS DIAGNOSTICS. VI. THE DIAGNOSTIC POTENTIAL OF THE C ii LINES AT 133.5 nm IN THE SOLAR ATMOSPHERE

We use 3D radiation magnetohydrodynamic models to investigate how the thermodynamic quantities in the simulation are encoded in observable quantities, thus exploring the diagnostic potential of the C ii 133.5 nm lines. We find that the line core intensity is correlated with the temperature at the formation height but the correlation is rather weak, especially when the lines are strong. The line core Doppler shift is a good measure of the line-of-sight velocity at the formation height. The line width is both dependent on the width of the absorption profile (thermal and non-thermal width) and an opacity broadening factor of 1.2–4 due to the optically thick line formation with a larger broadening for double peak profiles. The C ii 133.5 nm lines can be formed both higher and lower than the core of the Mg ii k line depending on the amount of plasma in the 14–50 kK temperature range. More plasma in this temperature range gives a higher C ii 133.5 nm formation height relative to the Mg ii k line core. The synthetic line profiles have been compared with Interface Region Imaging Spectrograph observations. The derived parameters from the simulated line profiles cover the parameter range seen in observations but, on average, the synthetic profiles are too narrow. We interpret this discrepancy as a combination of a lack of plasma at chromospheric temperatures in the simulation box and too small non-thermal velocities. The large differences in the distribution of properties between the synthetic profiles and the observed ones show that the C ii 133.5 nm lines are powerful diagnostics of the upper chromosphere and lower transition region.

79 ASTRONOMY AND ASTROPHYSICS↗

DOE OSTI2016

Densely ionizing radiation affects DNA methylation of selective LINE-1 elements

Long Interspersed Nucleotide Element 1 (LINE-1) retrotransposons are heavily methylated and are the most abundant transposable elements in mammalian genomes. Here, we investigated the differential DNA methylation within the LINE-1 under normal conditions and in response to environmentally relevant doses of sparsely and densely ionizing radiation. We demonstrate that DNA methylation of LINE-1 elements in the lungs of C57BL6 mice is dependent on their evolutionary age, where the elder age of the element is associated with the lower extent of DNA methylation. Exposure to 5-aza-2′-deoxycytidine and methionine-deficient diet affected DNA methylation of selective LINE-1 elements in an age- and promoter type-dependent manner. Exposure to densely IR, but not sparsely IR, resulted in DNA hypermethylation of older LINE-1 elements, while the DNA methylation of evolutionary younger elements remained mostly unchanged. We also demonstrate that exposure to densely IR increased mRNA and protein levels of LINE-1 via the loss of the histone H3K9 dimethylation and an increase in the H3K4 trimethylation at the LINE-1 5′-untranslated region, independently of DNA methylation. Our findings suggest that DNA methylation is important for regulation of LINE-1 expression under normal conditions, but histone modifications may dictate the transcriptional activity of LINE-1 in response to exposure to densely IR. - Highlights: • DNA methylation of LINE-1 elements is dependent on their evolutionary age. • Densely ionizing radiation affects DNA methylation of selective LINE-1 elements. • Radiation-induced reactivation of LINE-1 is DNA methylation-independent. • Histone modifications dictate the transcriptional activity of LINE-1.

60 APPLIED LIFE SCIENCES↗

DOE OSTI2014

Rapid change of field line connectivity and reconnection in stochastic magnetic fields

Magnetic fields without a direction of continuous symmetry have the generic feature that neighboring field lines exponentiate away from each other and become stochastic, and hence the ideal constraint of preserving magnetic field line connectivity becomes exponentially sensitive to small deviations from ideal Ohm's law. The idea of breaking field line connectivity by stochasticity as a mechanism for fast reconnection is tested with numerical simulations based on reduced magnetohydrodynamics equations with a strong guide field line-tied to two perfectly conducting end plates. Starting from an ideally stable force-free equilibrium, the system is allowed to undergo resistive relaxation. Two distinct phases are found in the process of resistive relaxation. During the quasi-static phase, rapid change of field line connectivity and strong induced flow are found in regions of high field line exponentiation. However, although the field line connectivity of individual field lines can change rapidly, the overall pattern of field line mapping appears to deform gradually. From this perspective, field line exponentiation appears to cause enhanced diffusion rather than reconnection. In some cases, resistive quasi-static evolution can cause the ideally stable initial equilibrium to cross a stability threshold, leading to formation of intense current filaments and rapid change of field line mapping into a qualitatively different pattern. It is in this onset phase that the change of field line connectivity is more appropriately designated as magnetic reconnection. Our results show that rapid change of field line connectivity appears to be a necessary, but not a sufficient condition for fast reconnection.

79 ASTRONOMY AND ASTROPHYSICS↗