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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 379 records · Page 21

Building a Computational and Experimental Rapid Response Pipeline to Counter the Coronavirus Disease 2019 Outbreak and Emerging Biothreats

The COVID-19 pandemic underscored the promise of monoclonal antibody-based prophylactic and therapeutic drugs, especially where protective candidates can be rapidly identified or developed for emerging biothreats and escape variants. Current cutting-edge technologies for this purpose still rely on pathogen-exposed convalescent volunteers and a large screening effort to find a proverbial needle in a haystack. Computational design of protective antibodies based on pre-existing templates skips those requirements and allows for greater control over the breadth and target epitope, while also co-optimizing for potency and developability or other biophysical characteristics. We approached this problem by building and expanding an in vitro experimental rapid antibody production and characterization pipeline to support development of an autonomous, closed loop, active learning software system based on structural simulation and ground truth experimental data to design and evaluate antibody antigen interactions. Starting from early in the pandemic, we targeted SARS-CoV-2, the causative agent of COVID-19, by re-purposing neutralizing antibodies against SARS-CoV-1 that had been identified in the wake of that outbreak in the early 2000’s. We successfully re-targeted three different anti-SARS-CoV-1 antibodies to neutralize SARS-CoV-2 in vitro, where the antibodies were generated externally and tested through conventional binding and neutralization assays internally or with collaborators. As antibodies were identified from the blood of humans infected with SARS-CoV-2, we shifted to collaborate with academic partners to develop improved versions of their human-derived antibodies. This work reached its most important stage in rapid response to the emergence of the Omicron variant of concern (VOC) in late 2021. In a matter of weeks, enabled by on demand innovation to our screening pipeline, we computationally designed and experimentally characterized derivative antibodies of COV2-2130, one of two antibodies from Vanderbilt that form the basis of the AstraZeneca Evusheld prophylactic drug product. This drug product suffers a serious loss of efficacy against Omicron BA.1 and BA.1.1, the first Omicron strains. Due to tight integration of computational design and experimental evaluation, we were able to identify a pair of designs with potent neutralization of the main targets Omicron BA.1 and BA.1.1; but also the earlier Delta variant, and subsequent Omicron strains including BA.2, BA.4, BA.5, and BA.2.75, demonstrating that our multi-target design process can, by its nature, produce robust antibody designs that strictly improve over the parental antibody. These results, recognized by a 2022 Director’s Science and Technology award, have enabled the follow-on GUIDE program, to commence in FY23. While earlier design campaigns were substantially outsourced, we have engineered better and faster processes internally to better compliment, calibrate, and speed computational designs. As part of the follow-on GUIDE program, we will stand up a rapid and high-throughput antibody production and characterization facility staffed with the expertise and capabilities to foster our current collaboration across PLS and ENG as well as other partnerships toward computational design of biologics.

59 BASIC BIOLOGICAL SCIENCES↗

ML-Based Reconstruction in a Pixelated LArTPC

The Deep Underground Neutrino Experiment (DUNE) will address open issues in neutrino physics such as the measurement of the CP-violating phase in neutrino oscillations and the neutrino mass ordering. DUNE is expected to have the most energetic neutrino beam in the world. The 2x2 demonstrator is a single-phase liquid argon time projection chamber (LArTPC), with four modules, operated as a prototype for the DUNE Liquid Argon Near Detector (ND-LAr). Each module in the 2x2 demonstrator is 0.67m x 0.67m x 1.8m. Based on the ArgonCube design concept, the 2x2 features a novel pixelated charge readout and advanced high-coverage photon detection system. Machine learning can be used to form a complete reconstruction pipeline for physics interactions in the 2x2 detector. This poster will describe the workings of a package under development called SPINE and its current performance.

43 PARTICLE ACCELERATORS↗

Transformer Neural Networks with Spatiotemporal Attention for Predictive Control and Optimization of Industrial Processes

In the context of real-time optimization and model predictive control of industrial systems, machine learning, and neural networks represent cutting-edge tools that hold promise for enhancing dynamic modeling. This work presents a novel transformer neural network architecture for real-time optimization and model predictive control. This network design includes a modified attention mechanism inspired by positional embedding attention from vision transformers and task-specific modifications to the input-output structure of the transformer’s decoder stack. Experiments were conducted using data from a 450 MW coal-fired power plant to evaluate this approach's effectiveness. The transformer neural network was compared with conventional recurrent models, including GRU and LSTM. The transformer exhibited a 6% increase in the R-squared (R2) value of predictions and an 83% reduction in mean squared error (MSE). Computation time was also reduced by 84% compared to conventional recurrent models.

Gallup, Ethan R.↗

Systematic Evaluation of Backdoor Data Poisoning Attacks on Image Classifiers

Backdoor data poisoning attacks have recently been demonstrated in computer vision research as a potential safety risk for machine learning (ML) systems. Traditional data poisoning attacks manipulate training data to induce unreliability of an ML model, whereas backdoor data poisoning attacks maintain system performance unless the MLmodel is presented with an input containing an embedded“trigger” that provides a predetermined response advantageous to the adversary. Our work builds upon prior back-door data-poisoning research for ML image classifiers and systematically assesses different experimental conditions including types of trigger patterns, persistence of trigger patterns during retraining, poisoning strategies, architectures (ResNet-50, NasNet, NasNet-Mobile), datasets (Flowers, CIFAR-10), and potential defensive regularization techniques (Contrastive Loss, Logit Squeezing, Manifold Mixup,Soft-Nearest-Neighbors Loss). Experiments yield four key findings. First, the success rate of backdoor poisoning at-tacks varies widely, depending on several factors, including model architecture, trigger pattern and regularization technique. Second, we find that poisoned models are hard to detect through performance inspection alone. Third, regularization typically reduces backdoor success rate, although it can have no effect or even slightly increase it, depending on the form of regularization. Finally, backdoors inserted through data poisoning can be rendered ineffective after just a few epochs of additional training on a small set of clean data without affecting the model’s performance.

Truong, Loc T.↗

Computationally Efficient Learning of Large Scale Dynamical Systems: A Koopman Theoretic Approach

In recent years there has been a considerable drive towards data-driven analysis, discovery and control of dynamical systems. To this end, operator theoretic methods, namely, Koopman operator methods have gained a lot of interest. In general, the Koopman operator is obtained as a solution to a least-squares problem, and as such, the Koopman operator can be expressed as a closed-form solution that involves the computation of Moore-Penrose inverse of a matrix. For high dimensional systems and also if the size of the obtained data-set is large, the computation of the Moore-Penrose inverse becomes computationally challenging. In this paper, we provide an algorithm for computing the Koopman operator for high dimensional systems in a time-efficient manner. We further demonstrate the efficacy of the proposed approach on two different systems, namely a network of coupled oscillators (with state-space dimension up to 2500) and IEEE 68 bus system (with state-space dimension 204 and up to 24,000 time-points).

Sinha, Subhrajit↗

Insights from PPL's DERMS Implementation

PPL Electric Utilities’ Keystone Solar Future Project (KSFP) is part of the U.S. Department of Energy’s Office of Energy Efficiency and Renewables, Energy Enabling Extreme Real-time Grid Integration of Solar Energy (ENERGISE) grant. The three-year project, beginning in October, 2017, funded an innovative pilot program to develop and evaluate a technology platform and framework for managing high levels of distributed energy resources (DER), and improving future DER interconnection. The KSFP aimed to bridge gaps between existing and future technology, including Distributed Energy Resource Management Systems (DERMS), by monitoring, managing, and optimizing a system with high penetration of solar and other DER. Specifically, the project worked to make Demand Management Systems (DMS) applications, devices, and real-time communications technology DER-aware to allow for advanced applications for utility operations. Here, by installing and implementing a DERMS, project designers transformed how DERs interact with PPL’s distribution system, offering learnings and results worth sharing industry-wide.

Leader, Jared↗

An Intelligent System for Automatic Selection of DC-DC Converter Topology with Optimal Design

In this paper, we present an intelligent system that has the capabilities of automatically selecting topology classes and optimizing circuit parameters of DC-DC power converters for a given design specification. The system, Machine-Learning-enhanced Automated Circuit Configuration and Evaluation of Power Converters (ML-ACCEPT), uses a hybrid of machine learning technologies, decision tree inference, reinforcement learning and deep neural networks. The system gives high accurate recommendations of design topology classes and computationally efficient results in optimizing power efficiencies in power converter design.

Xue, Lincoln↗

Liquid Cooling for HPC - National Renewable Energy Lab

NREL has nearly a decade of experience in liquid cooling or HPC. The technical approach will be presented along with success stories on energy, cost and emission savings over two generations of HPC systems. Lessons learned will also be shared.

energy efficient computing↗

Systems and methods for active learning from sparse training data

A method for active learning using sparse training data can include training a machine learning model using less than ten first training data points to generate a candidate machine learning model. The method can include performing a Monte Carlo process to sample one or more first outputs of the candidate machine learning model. The method can include testing the one or more first outputs to determine if each of the one or more first outputs satisfy a respective convergence condition. The method can include, responsive to at least one first output not satisfying the respective convergence condition, training the candidate machine learning model using at least one second training data point corresponding to the at least one first output. The method can include, responsive to the one or more first outputs each satisfying the respective convergence condition, outputting the candidate machine learning model.

Sankaranarayanan, Subramanian↗

Evaluation of Machine Learning Models for Automated Data Analysis in In-Service Nuclear Power Plant Inspections

The commercial nuclear power industry is facing a potential shortage of certified nondestructive evaluation (NDE) analysts to meet future in-service inspection demands. Automated data analysis (ADA) currently supports human inspectors in tasks such as eddy current evaluations for steam generator examinations. Machine learning (ML) systems are nearing the capability to pass performance demonstration tests for ultrasonic testing (UT) inspections of reactor pressure vessel upper head penetrations in nuclear power plants (NPPs). Current research and development is focused on assisted analysis (AA) of ADA versus fully automated examinations. This presentation will cover assessment of ML flaw detection on dissimilar metal weld (DMW) piping joints.

36 MATERIALS SCIENCE↗