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At least 379 records · Page 21

Chemical and Thermodynamic Constraints on the Thermal Evolution of Eucrites

Vesta is the only differentiated asteroid with a nearly intact crust, making it the candidate for studying early planetary differentiation. It is commonly thought that the howardite, eucrite, and diogenite (HED) clan of meteorites derive from Vesta, and thus the study of HEDs is important for understanding the evolution of primitive bodies in the early solar system [1]. Of particular interest are the unusual trace element abundances in Stannern group eucrites, which have been interpreted as partial melting and melt contamination events that occurred on the parent body during thermal metamorphism[2]. However, some samples that contain evidence of high temperature metamorphism, such as Elephant Moraine (EET) 90020, have anomalous REE patterns that have been interpret-ed multiple ways. For example [3] concluded that the loss of small degrees of partial melt depleted the sample in LREEs while [4] concluded that subsolidus diffusion better explained why depletion of only some highly incompatible elements is observed. The heterogeneous nature of this sample makes reconstructing its petrologic history challenging. Here, we conduct further petrographic and chemical studies on polished thin sections of EET 90020 and compare results to previous studies [3-5]. Additionally, we combine chemical analyses with thermodynamic models in order to refine the constraints on the post-crystallization thermal history of EET 90020. We additionally include studies of Graves Nunataks (GRA) 98098, which also contains evidence of high temperature metamorphism and anomalous geochemical signatures, as well as evidence of solid state diffusion at lower temperatures [6].

Gorce, Jennifer S.↗

How do North American weather regimes drive wind energy at the sub-seasonal to seasonal timescales?

Abstract There has been an increasing need for forecasting power generation at the subseasonal to seasonal (S2S) timescales to support the operation, management, and planning of the wind-energy system. At the S2S timescales, atmospheric variability is largely related to recurrent and persistent weather patterns, referred to as weather regimes (WRs). In this study, we identify four WRs that influence wind resources over North America using a universal two-stage procedure approach. These WRs are responsible for large-scale wind and power production anomalies over the CONUS at the S2S timescales. The WR-based reconstruction explains up to 40% of the monthly variance of power production over the western United States, and the explanatory power of WRs generally increases with the increase of timescales. The identified relationship between WRs and power production reveals the potential and limitations of the regional WR-based wind resource assessment over different regions of the CONUS across multiple timescales.

54 ENVIRONMENTAL SCIENCES↗

The PMIP4 Last Glacial Maximum experiments: preliminary results and comparison with the PMIP3 simulations

The Last Glacial Maximum (LGM, ∼ 21 000 years ago) has been a major focus for evaluating how well state-of-the-art climate models simulate climate changes as large as those expected in the future using paleoclimate reconstructions. A new generation of climate models has been used to generate LGM simulations as part of the Paleoclimate Modelling Intercomparison Project (PMIP) contribution to the Coupled Model Intercomparison Project (CMIP). Here, we provide a preliminary analysis and evaluation of the results of these LGM experiments (PMIP4, most of which are PMIP4-CMIP6) and compare them with the previous generation of simulations (PMIP3, most of which are PMIP3-CMIP5). We show that the global averages of the PMIP4 simulations span a larger range in terms of mean annual surface air temperature and mean annual precipitation compared to the PMIP3-CMIP5 simulations, with some PMIP4 simulations reaching a globally colder and drier state. However, the multi-model global cooling average is similar for the PMIP4 and PMIP3 ensembles, while the multi-model PMIP4 mean annual precipitation average is drier than the PMIP3 one. There are important differences in both atmospheric and oceanic circulations between the two sets of experiments, with the northern and southern jet streams being more poleward and the changes in the Atlantic Meridional Overturning Circulation being less pronounced in the PMIP4-CMIP6 simulations than in the PMIP3-CMIP5 simulations. Changes in simulated precipitation patterns are influenced by both temperature and circulation changes. Differences in simulated climate between individual models remain large. Therefore, although there are differences in the average behaviour across the two ensembles, the new simulation results are not fundamentally different from the PMIP3-CMIP5 results. Evaluation of large-scale climate features, such as land–sea contrast and polar amplification, confirms that the models capture these well and within the uncertainty of the paleoclimate reconstructions. Nevertheless, regional climate changes are less well simulated: the models underestimate extratropical cooling, particularly in winter, and precipitation changes. These results point to the utility of using paleoclimate simulations to understand the mechanisms of climate change and evaluate model performance.

Last Glacial Maximum↗

Role of fast-ion transport manipulating safety factor profile in KSTAR early diverting discharges

Magnetohydrodynamics (MHD) activity is analyzed for a particular KSTAR discharge category, the main features of which are a high-$q_\mathrm{min}$ and a broad q profile. An interesting finding in this scenario is that a steady-state high-$q_\mathrm{min}$ and broad q profile has been constructed even without a strong off-axis current drive scheme. Time traces of magnetics spectrograms and electron cyclotron emission imaging (ECEI) clearly show that Alfvénic type MHD activity appears as a high-$q_\mathrm{min}$ and broad q profile is formed. Conversely, this activity disappears as the current profiles evolve toward a low-$q_\mathrm{min}$ profile. In this study, the effect of MHD modes and accompanying fast-particle transport on the formation of various current profiles is explored. The frequency patterns of the magnetics spectrograms and ECEI coherence are compared using a NOVA analysis to determine which series of Alfvénic modes are active. Then, the kick-model is applied to potential modes, and used to estimate how much fast-ions are transported and beam driven current profiles are varied. Here, by comparing the reconstructed total current profile from the kinetic EFIT with the beam-driven current profile estimated from the kick model, it is determined how energetic particle transport is responsible for maintaining the safety factor profile and which q profile can provide high β N operation.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Genetic and behavioral adaptation of Candida parapsilosis to the microbiome of hospitalized infants revealed by in situ genomics, transcriptomics, and proteomics

Background Candida parapsilosis is a common cause of invasive candidiasis, especially in newborn infants, and infections have been increasing over the past two decades. C. parapsilosis has been primarily studied in pure culture, leaving gaps in understanding of its function in a microbiome context. Results. Here, we compare five unique C. parapsilosis genomes assembled from premature infant fecal samples, three of which are newly reconstructed, and analyze their genome structure, population diversity, and in situ activity relative to reference strains in pure culture. All five genomes contain hotspots of single nucleotide variants, some of which are shared by strains from multiple hospitals. A subset of environmental and hospital-derived genomes share variants within these hotspots suggesting derivation of that region from a common ancestor. Four of the newly reconstructed C. parapsilosis genomes have 4 to 16 copies of the gene RTA3, which encodes a lipid translocase and is implicated in antifungal resistance, potentially indicating adaptation to hospital antifungal use. Time course metatranscriptomics and metaproteomics on fecal samples from a premature infant with a C. parapsilosis blood infection revealed highly variable in situ expression patterns that are distinct from those of similar strains in pure cultures. For example, biofilm formation genes were relatively less expressed in situ, whereas genes linked to oxygen utilization were more highly expressed, indicative of growth in a relatively aerobic environment. In gut microbiome samples, C. parapsilosis co-existed with Enterococcus faecalis that shifted in relative abundance over time, accompanied by changes in bacterial and fungal gene expression and proteome composition. Conclusions The results reveal potentially medically relevant differences in Candida function in gut vs. laboratory environments, and constrain evolutionary processes that could contribute to hospital strain persistence and transfer into premature infant microbiomes.

59 BASIC BIOLOGICAL SCIENCES↗

Sub-pixel high-resolution imaging of high-energy x-rays inspired by sub-wavelength optical imaging

We have developed and demonstrated an image super-resolution method—XR-UNLOC: X-Ray UNsupervised particle LOCalization—for hard x-rays measured with fast-frame-rate detectors that is an adaptation of the principle of photo-activated localization microscopy (PALM) and stochastic optical reconstruction microscopy (STORM), which enabled biological fluorescence imaging at sub-optical-wavelength scales. We demonstrate the approach on experimental coherent Bragg diffraction data measured with 52 keV x-rays from a nanocrystalline sample. From this sample, we resolve the fine fringe detail of a high-energy x-ray Bragg coherent diffraction pattern to an upsampling factor of 16 of the native pixel pitch of 30 μ m of a charge-integrating fastCCD detector. This was accomplished by analysis of individual photon locations in a series of “nearly-dark” instances of the diffraction pattern that each contain only a handful of photons. Central to our approach was the adaptation of the UNLOC photon fitting routine for PALM/STORM to the hard x-ray regime to handle much smaller point spread functions, which required a different statistical test for photon detection and for sub-pixel localization. A comparison to a photon-localization strategy used in the x-ray community (“droplet analysis”) showed that XR-UNLOC provides significant improvement in super-resolution. We also developed a metric by which to estimate the limit of reliable upsampling with XR-UNLOC under a given set of experimental conditions in terms of the signal-to-noise ratio of a photon detection event and the size of the point spread function for guiding future x-ray experiments in many disciplines where detector pixelation limits must be overcome.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Automatic evaluation of interferograms

A system for the evaluation of interference patterns was developed. For digitizing and processing of the interferograms from classical and holographic interferometers a picture analysis system based upon a computer with a television digitizer was installed. Depending on the quality of the interferograms, four different picture enhancement operations may be used: Signal averaging; spatial smoothing, subtraction of the overlayed intensity function and the removal of distortion-patterns using a spatial filtering technique in the frequency spectrum of the interferograms. The extraction of fringe loci from the digitized interferograms is performed by a foating-threshold method. The fringes are numbered using a special scheme after the removal of any fringe disconnections which appeared if there was insufficient contrast in the holograms. The reconstruction of the object function from the fringe field uses least squares approximation with spline fit. Applications are given.

Becker, F.↗

Ancient Martian aeolian sand dune deposits recorded in the stratigraphy of Valles Marineris and implications for past climates

Aeolian sediment transport, deposition, and erosion have been ongoing throughout Mars’ history. This record of widespread aeolian processes is preserved in landforms and geologic units that retain important clues about past environmental conditions including wind patterns. In this study we describe landforms within Melas Chasma, Valles Marineris, that occur in distinct groups with linear to crescentic shapes, arranged with a characteristic wavelength; some possess slope profiles analogous to modern sand dunes, yet show evidence for lithification. Based on the features’ dimensions, asymmetry, and spatial patterns relative to modern equivalents, we interpret these landforms to be two classes of aeolian bedforms: decameter-scale mega-ripples and sand dunes. The presence of superposed erosional features and depositional units indicates these landforms were cemented and likely ancient. Melas paleo-dunes are found atop Hesperian-aged layered deposits, but we estimate them to be younger, likely lithified in the Amazonian period. Although a range of degradation was observed, some paleo-dunes are >10 m tall and maintain steep lee sides (>25°), an uncommon scenario for terrestrial examples as other geologic processes lead to dune obliteration. The preserved paleo-bedform geometries are largely consistent with those of modern aeolian indicators, suggesting no major shifts in wind regime or contributing boundary conditions. Finally, we propose their appearance and context require sequential periods of dune migration, stabilization following catastrophic burial, cementation, differential erosion, exposure, and burial. The presence of wholly preserved duneforms appears to be more common on Mars compared to the Earth and may signal something important about Martian landscape evolution. Plain Language Summary Wind-driven sand dunes are common on modern Mars and the presence of certain sedimentary rock layers indicates these landforms occurred there in the past. Here, we explore features in the canyons of Valles Marineris which show characteristics frequently attributed to dunes, yet evidence for their lithification and burial is clear. Their horizontal extent, height, shape, slopes, and collective spatial patterns led to our interpretation of them as lithified dune fields. The heavily eroded appearance along with superposed elements such as craters and boulders led to the conclusion that these are relatively ancient landforms. Despite this erosion This level of preservation is rare for terrestrial sand dunes due to erosion and tectonics, thus providing an opportunity to reconstruct the various factors contributing to their history. Understanding the circumstances that led to the preservation of these ancient duneforms will yield crucial information regarding planetary sedimentary processes and the geologic history of the region.

Matthew Chojnacki↗

Empirical Modeling of the Storm Time Innermost Magnetosphere Using Van Allen Probes and THEMIS Data: Eastward and Banana Currents

The structure of storm time currents in the inner magnetosphere, including its innermost region inside 4R(sub E), is studied for the first time using a modification of the empirical geomagnetic field model TS07D and new data from Van Allen Probes and Time History of Events and Macroscale Interactions during Substorms missions. It is shown that the model, which uses basis-function expansions instead of ad hoc current modules to approximate the magnetic field, consistently improves its resolution and magnetic field reconstruction with the increase of the number of basis functions and resolves the spatial structure and evolution of the innermost eastward current. This includes a connection between the westward ring current flowing largely at R > or approx. 3R(sub E) and the eastward ring current concentrated at R < or approx. 3R(sub E) resulting in a vortex current pattern. A similar pattern coined 'banana current' was previously inferred from the pressure distributions based on the energetic neutral atom imaging and first-principles ring current simulations. The morphology of the equatorial currents is dependent on storm phase. During the main phase, it is complex, with several asymmetries forming banana currents. Near SYM-H minimum, the banana current is strongest, is localized in the evening-midnight sector, and is more structured compared to the main phase. It then weakens during the recovery phase resulting in the equatorial currents to become mostly azimuthally symmetric.

Stephens, G. K.↗

Coronal Reconstruction using LASCO and UVCS Observations

The main goal of the research described in the original proposal was to develop methods to quantify coronal and inner-heliospheric velocity fields of the 'quiet' solar wind. For this we planned to use several sources of observations:(1) SOHO/UVCS velocity information in the range 1.5-3 Solar Radii obtained from Doppler dimming observations; (2) projected solar wind velocities (into the plane of the sky) obtained from SOHO/ LASCO images (1.1-30 Solar Radii), primarily derived from two-dimensional correlation tracking techniques; (3) Interplanetary scintillation observations of the heliospheric (> 26 Solar Radii) solar wind velocity from the Solar-Terrestrial Environment Laboratory (STELab) in Nagoya, Japan; (4) Ecliptic in situ observations: data for the ecliptic solar wind are available from the MIT and Los Alamos plasma experiments on the Earth-orbiting IMP-8 spacecraft, from the Cellas instrument on SOHO near the LI Lagrange point, and from the WIND spacecraft; (5) Out-of-ecliptic in situ observations: these data are available primarily from the Los Alamos SWOOPS instrument on Ulysses, which passed over the solar north pole in August 1995, about one year prior to the Whole Sun Month period. Where ever possible we planned to use the first Whole Sun Month as the main time period for the analysis, since we expected that for this period it would be easiest to obtain adequate coverage over the extended period of time required to analyze 'quiet' solar wind patterns. Beyond the observations mentioned above (primarily SOHO data) we extended our selection of data to several events identified in the Yohkoh/SXT data base which directly promised to provide us with clues about the connection between the slow solar wind observed by IPS in the inner heliosphere and their sources in the low corona, in particular active regions. We also obtained valuable results using SWOOPS ill situ observations from the pole-to-pole passage of Ulysses in a comparison with solar wind velocities derived from a tomographic reconstruction of Nagoya IPS observations.

Hick, P. P.↗

Electric organ discharges and electric images during electrolocation

Weakly electric fish use active electrolocation - the generation and detection of electric currents - to explore their surroundings. Although electrosensory systems include some of the most extensively understood circuits in the vertebrate central nervous system, relatively little is known quantitatively about how fish electrolocate objects. We believe a prerequisite to understanding electrolocation and its underlying neural substrates is to quantify and visualize the peripheral electrosensory information measured by the electroreceptors. We have therefore focused on reconstructing both the electric organ discharges (EODs) and the electric images resulting from nearby objects and the fish's exploratory behaviors. Here, we review results from a combination of techniques, including field measurements, numerical and semi-analytical simulations, and video imaging of behaviors. EOD maps are presented and interpreted for six gymnotiform species. They reveal diverse electric field patterns that have significant implications for both the electrosensory and electromotor systems. Our simulations generated predictions of the electric images from nearby objects as well as sequences of electric images during exploratory behaviors. These methods are leading to the identification of image features and computational algorithms that could reliably encode electrosensory information and may help guide electrophysiological experiments exploring the neural basis of electrolocation.

Review, Tutorial↗

A Novel Hit-Based Method to Distinguish Tracks and Showers in ProtoDUNE Single Phase

Pandora is a pattern recognition software used in liquid argon time projection chamber (LArTPC) experiments such as MicroBooNE, DUNE, SBND, ICARUS, and ProtoDUNE Single Phase (SP). The output of a LArTPC can be considered a high-resolution 2D image and energy depositions, called hits, from particles in a LArTPC create complicated topologies that are broadly classified into tracks and showers. The event reconstruction is particularly challenging when there are multiple overlapping particles and in order to fully harness the imaging capabilities of thoseexperiments, Pandora needs to separate them. A hit-based approach to this problem is presented, which analyses small regions around each hit in events from DUNE Far Detector (FD) and from those regions it calculates local variables that are used subsequently in a machine learning approach. After this stage, it is given to each hit a probability to belong to a track or shower-like particle. Results will show the performance of separation between tracks and showers. This method is planned to be used for ProtoDUNE SP.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

Observational Requirements for High-Fidelity Reverberation Mapping

We present a series of simulations to demonstrate that high-fidelity velocity-delay maps of the emission-line regions in active galactic nuclei can be obtained from time-resolved spectrophotometric data sets like those that will arise from the proposed Kronos satellite. While previous reverberation-mapping experiments have established the size scale R of the broad emission-line regions from the mean time delay tau = R/c between the line and continuum variations and have provided strong evidence for supermassive black holes, the detailed structure and kinematics of the broad-line region remain ambiguous and poorly constrained. Here we outline the technical improvements that will be required to successfully map broad-line regions by reverberation techniques. For typical AGN continuum light curves, characterized by power-law power spectra P (f) is proportional to f(exp -alpha) with a = -1.5 +/- 0.5, our simulations show that a small UV/optical spectrometer like Kronos will clearly distinguish between currently viable alternative kinematic models. From spectra sampled at time intervals Delta t and sustained for a total duration T(sub dur), we can reconstruct high-fidelity velocity-delay maps with velocity resolution comparable to that of the spectra, and delay resolution Delta tau approx. 2 Delta t, provided T(sub dur) exceeds the broad-line region light crossing time by at least a factor of three. Even very complicated kinematical models, such as a Keplerian flow with superimposed spiral wave pattern, are resolved in maps from our simulated Kronos datasets. Reverberation mapping with Kronos data is therefore likely deliver the first clear maps of the geometry and kinematics in the broad emission-line regions 1-100 microarcseconds from supermassive black holes.

Horne, Keith↗

Kingdom-Wide Analysis of Fungal Protein-Coding and tRNA Genes Reveals Conserved Patterns of Adaptive Evolution

Protein-coding genes evolved codon usage bias due to the combined but uneven effects of adaptive and nonadaptive influences. Studies in model fungi agree on codon usage bias as an adaptation for fine-tuning gene expression levels; however, such knowledge is lacking for most other fungi. Our comparative genomics analysis of over 450 species supports codon usage and transfer RNAs (tRNAs) as coadapted for translation speed and this is most likely a realization of convergent evolution. Rather than drift, phylogenetic reconstruction inferred adaptive radiation as the best explanation for the variation of interspecific codon usage bias. Although the phylogenetic signals for individual codon and tRNAs frequencies are lower than expected by genetic drift, we found remarkable conservation of highly expressed genes being codon optimized for translation by the most abundant tRNAs, especially by inosine-modified tRNAs. As an application, we present a sequence-to-expression neural network that uses codons to reliably predict highly expressed transcripts. The kingdom Fungi, with over a million species, includes many key players in various ecosystems and good targets for biotechnology. Collectively, our results have implications for better understanding the evolutionary success of fungi, as well as informing the biosynthetic manipulation of fungal genes.

59 BASIC BIOLOGICAL SCIENCES↗

Overview of high-density QCD studies with the CMS experiment at the LHC

We review key measurements performed by CMS in the context of its heavy ion physics program, using event samples collected in 2010-2018 with several collision systems and energies. These studies provide detailed macroscopic and microscopic probes of the quark-gluon plasma (QGP) created at the LHC energies, a medium characterized by the highest temperature and smallest baryon-chemical potential ever reached in the laboratory. Numerous observables related to high-density quantum chromodynamics (QCD) were studied, leading to some of the most impactful and qualitatively novel results in the 40-year history of the field. Using a dedicated high-multiplicity trigger in the first pp run, CMS discovered that small collision systems can exhibit signs of collectivity, a generic phenomenon with significant implications and presently understood to affect essentially all soft physics processes. This observation opened new paths to understand how fluidity and plasma properties emerge in QCD matter as a function of system size. Measurements of jet quenching have reached a completely new level of detail by directly assessing, for the first time, the medium modification of parton showers, as opposed to simply observing leading hadrons or di-hadrons. The first fully reconstructed beauty hadron and heavy-flavor jet nuclear modifications were also measured. The large size of the event samples, the precision of the measurements, and the extension of the probed kinematical phase space, allowed many other hard probes of the QGP medium to be explored in detail, leading to multiple groundbreaking findings. In particular, the seminal measurements of bottomonium suppression patterns answer fundamental questions that have been actively pursued, both theoretically and experimentally, by the community since the mid-1980s. We conclude by outlining the opportunities offered by the continuation of this physics program at the LHC.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Giant virus diversity and host interactions through global metagenomics

Our current knowledge about nucleocytoplasmic large DNA viruses (NCLDVs) is largely derived from viral isolates that are co-cultivated with protists and algae. Here we reconstructed 2,074 NCLDV genomes from sampling sites across the globe by building on the rapidly increasing amount of publicly available metagenome data. This led to an 11-fold increase in phylogenetic diversity and a parallel 10-fold expansion in functional diversity. Analysis of 58,023 major capsid proteins from large and giant viruses using metagenomic data revealed the global distribution patterns and cosmopolitan nature of these viruses. The discovered viral genomes encoded a wide range of proteins with putative roles in photosynthesis and diverse substrate transport processes, indicating that host reprogramming is probably a common strategy in the NCLDVs. Furthermore, inferences of horizontal gene transfer connected viral lineages to diverse eukaryotic hosts. We anticipate that the global diversity of NCLDVs that we describe here will establish giant viruses-which are associated with most major eukaryotic lineages-as important players in ecosystems across Earth's biomes.

59 BASIC BIOLOGICAL SCIENCES↗

Simulating Diverse HEP Workflows on Heterogeneous Architectures

We evaluate key patterns and estimate throughput bounds of simulated transformation of conventional high energy physics (HEP) data processing workflows to heterogeneous equivalents. The simulation parameter space includes the number of offloaded tasks, CPU/accelerator ratios of intra-task computations, offload latencies, and run time efficiency of offloaded computations. The simulation is performed for a diverse set of state-of-the-art event reconstruction scenarios from ATLAS, LHCb and CMS - the frontier HEP experiments of the Large Hadron Collider project.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗