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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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All sourcesNASA NTRSDOE OSTI
DOE OSTI2023

TopPICR: A Companion R Package for Top-Down Proteomics Data Analysis

Top-down proteomics is the analysis of proteins in their intact form without proteolysis, thus preserving valuable information about post-translational modifications, isoforms, and proteolytic processing. However, it is still a developing field due to limitations in the instrumentation, difficulties with interpretation of complex mass spectra, and a lack of well-established quantification approaches. TopPIC is one of the popular tools for proteoform identification. Here we extended its capabilities into label-free proteoform quantification by developing a companion R package (TopPICR). Key steps in the TopPICR pipeline include filtering identifications, inferring a minimal set of protein accessions explaining the observed sequences, aligning retention times, recalibrating measured masses, clustering features across datasets, and finally compiling feature intensities using the match-between-runs approach. The output of the pipeline is an MSnSet object which makes downstream data analysis seamlessly compatible with packages from the Bioconductor project. It also provides the capability for visualizing proteoforms within the context of the parent protein sequence. The functionality of TopPICR is demonstrated on top-down LC-MS/MS datasets of 10 human-in-mouse xenografts of luminal and basal breast tumor samples.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2025

Universal Nuclear Accident Dosimeter

The Lawrence Livermore National Laboratory (LLNL) Universal Nuclear Accident Dosimetry (UNAD) project is a four-year initiative aimed at advancing nuclear accident dosimetry methods. This article presents an overview of the research, key findings, and the progress made throughout the project. The primary goals included a background into the history of nuclear accident dosimetry, consolidating current dosimetry techniques within the NNSA/DOE complex, fostering collaboration among subject matter experts, and exploring novel technologies for potential implementation. The technical focus centered on investigating new and novel technologies, instrumentation methods, and analysis methods to develop recommendations for a potential nuclear accident dosimeter (NAD) to be universally deployed through the DOE complex. A multilaboratory and multinational Usergroup was established, conducting periodic meetings to facilitate knowledge exchange. The UNAD team has participated in two international nuclear accident dosimetry intercomparison exercises and one characterization exercise, where the existing LLNL NAD and a prototype alanine electron paramagnetic dosimeter NAD were deployed. Ongoing improvements are being made to the prototype NAD based on results from the exercises, laboratory studies, and collaboration with other laboratories. A machine learning algorithm to optimize the geometry and conversion factors of the current LLNL NAD is being implemented, and the resulting design will be tested in the next exercise. In conclusion, key lessons learned and future directions for the project are discussed.

Electron paramagnetic resonance spectroscopy↗
DOE OSTI2025

A Morphological Model to Separate Resolved–Unresolved Sources in the DESI Legacy Surveys: Application in the LS4 Alert Stream

Separating resolved and unresolved sources in large imaging surveys is a fundamental step to enable downstream science, such as searching for extragalactic transients in wide-field time-domain surveys. Here we present our method to effectively separate point sources from the resolved, extended sources in the Dark Energy Spectroscopic Instrument (DESI) Legacy Surveys (LS). We develop a supervised machine learning model based on the Gradient Boosting algorithm XGBoost. The features input to the model are purely morphological and are derived from the tabulated LS data products. We train the model using ∼2 × 10 5 LS sources in the COSMOS field with HST morphological labels and evaluate the model performance on LS sources with spectroscopic classification from the DESI Data Release 1 (∼2 × 10 7 objects) and the Sloan Digital Sky Survey Data Release 17 (∼3 × 10 6 objects), as well as on ∼2 × 10 8 Gaia stars. A significant fraction of LS sources are not observed in every LS filter, and we therefore build a “Hybrid” model as a linear combination of two XGBoost models, each containing features combining aperture flux measurements from the “blue” (gr) and “red” (iz) filters. The Hybrid model shows a reasonable balance between sensitivity and robustness, and achieves higher accuracy and flexibility compared to the LS morphological typing. With the Hybrid model, we provide classification scores for ∼3 × 10 9 LS sources, making this the largest ever machine learning catalog separating resolved and unresolved sources. The catalog has been incorporated into the real-time pipeline of the La Silla Schmidt Southern Survey (LS4), enabling the identification of extragalactic transients within the LS4 alert stream.

astrostatistics↗
DOE OSTI2020

Resolving the fast ion distribution from imaging neutral particle analyzer measurements

A recently developed imaging neutral particle analyzer (INPA) on the DIII-D tokamak (Du 2018 Nucl. Fusion 58 082006) enables fast ion velocity-space tomography of high fidelity at the interrogated phase space. To accomplish this, the spatial and energy depending fast ( E < 80 keV) neutral flux towards the INPA stripping foils is calculated with FIDASIM and a newly developed code INPASIM simulates the INPA instrumental response to this neutral flux. Included in INPASIM is the neutral-foil interaction, the Larmor orbit tracing between the foil and the phosphor, the phosphor response to the incident ion flux as well as camera focusing. Benefiting from heavy, localized velocity-space weights and excellent signal to noise, computed tomography using the Ridge regression method is able to successfully reconstruct fine-scale velocity-space structures produced by multiple neutral beams separated by as small as ~3 keV in tests. Applying the inversion method to a sawtooth crash event reveals a significant profile flattening of confined passing particles across q = 1 flux surface, as well as a redistribution of fast ions into the trapped orbits at the plasma edge close to the last closed flux surface.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗
DOE OSTI2020

Ptychographic atomic electron tomography: Towards three-dimensional imaging of individual light atoms in materials

Through numerical simulations, we demonstrate the combination of ptychography and atomic electron tomography as an effective method for low dose imaging of individual low-Z atoms in three dimensions. After generating noisy diffraction patterns with multislice simulations of an aberration-corrected scanning transmission electron microscope through a 5-nm zinc-oxide nanoparticle, we have achieved three-dimensional (3D) imaging of individual zinc and oxygen atoms and their defects by performing tomography on ptychographic projections. The methodology has also been simulated in 2D materials, resolving individual sulfur atoms in vertical WS 2 /WSe 2 van der Waals heterostructure with a low total electron dose where annular-dark-field images fail to resolve. Overall, we envision that the development of this method could be instrumental in studying the precise 3D atomic structures of radiation sensitive systems and low-Z atomic structures such as 2D heterostructures, catalysts, functional oxides, and glasses.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗
DOE OSTI2020

NuSTAR tests of sterile-neutrino dark matter: New Galactic bulge observations and combined impact

In this work, we analyze two dedicated NuSTAR observations with exposure ~190 ks located ~10° from the Galactic plane, one above and the other below, to search for x-ray lines from the radiative decay of sterile-neutrino dark matter. These fields were chosen to minimize astrophysical x-ray backgrounds while remaining near the densest region of the dark matter halo. We find no evidence of anomalous x-ray lines in the energy range 5–20 keV, corresponding to sterile neutrino masses 10–40 keV. Interpreted in the context of sterile neutrinos produced via neutrino mixing, these observations provide the leading constraints in the mass range 10–12 keV, improving upon previous constraints in this range by a factor ~2. We also compare our results to Monte Carlo simulations, showing that the fluctuations in our derived limit are not dominated by systematic effects. An updated model of the instrumental background, which is currently under development, will improve NuSTAR’s sensitivity to anomalous x-ray lines, particularly for energies 3–5 keV.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2020

Redshift-space streaming velocity effects on the Lyman- α forest baryon acoustic oscillation scale

The baryon acoustic oscillation (BAO) scale acts as a standard ruler for measuring cosmological distances and has therefore emerged as a leading probe of cosmic expansion history. However, any physical effect that alters the length of the ruler can lead to a bias in our determination of distance and expansion rate. One of these physical effects is the streaming velocity, the relative velocity between baryons and dark matter in the early Universe, which couples to the BAO scale due to their common origin in acoustic waves at recombination. In this work, we investigate the impact of streaming velocity on the BAO feature of the Lyman- α forest auto-power spectrum, one of the main tracers being used by the recently commissioned Dark Energy Spectroscopic Instrument (DESI). To do this, we develop a perturbative model for Lyman- α flux fluctuations which is complete to second order for a certain set of fields, and applicable to any redshift-space tracer of structure since it is based only on symmetry considerations. We find that there are 8 biasing coefficients through second order. We find streaming velocity-induced shifts in the BAO scale of 0.081%–0.149% (transverse direction) and 0.053%–0.058% (radial direction), depending on the model for the biasing coefficients used. These are smaller than, but not negligible compared to, the DESI Lyman- α BAO error budget, which is 0.46% on the overall scale. Overall, the sensitivity of these results to our choice of bias parameters underscores the need for future work to measure the higher-order biasing coefficients from simulations, especially for future experiments beyond DESI.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2023

Development of Transmission Measurements Capability at VISION Spectrometer [Slides]

This presentation covers the development of transmission measurements capability at VISION Spectrometer. Main takeaways include that INS and transmission measurements are and should be the most significant part of TSL validation, as they are the fundamental quantities used by Monte Carlo neutronics codes. Additionally, the development of transmission capability at VISION instrument has commenced. Promising first results have been obtained with a big impact by the use of the collimators. Finally, Areas of improvement have been identified and new measurements are planned for June.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗
DOE OSTI2024

Cold Plasma Measurements

We have continued the simulation campaign in support of our ongoing magnetospheric cold plasma research project. This project aims to develop the next-generation particle instruments to measure the properties of the cold particle populations in the Earth’s magnetosphere. For this purpose, simulations have been performed with a Particle-In-Cell (PIC) code called the Curvilinear PIC (CPIC). The code is formulated in curvilinear geometry and couples the standard PIC algorithm with algorithms for the generation and adaptation of the underlaying computational mesh. It conforms to complex objects like spacecraft and it can place more grid points in regions where higher resolution is needed. The code also features a scalable solver based on the multigrid algorithm and it is fully parallelized via domain decomposition and MPI.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗
DOE OSTI2024

Equitable Strategies for Residential Building Energy Efficiency and Electrification in San José, California

Hotter summers, heat waves, wildfires, and droughts are already affecting San Jose residents, with historically marginalized communities impacted first and worst. The City of San Jose has ambitious goals to make the city climate-neutral by 2030 and serve as an example for cities to accelerate climate action around the world. Electrifying and decarbonizing residential buildings are important priorities to achieve San Jose's plans to reach carbon neutrality while enabling residents to live the "Good Life 2.0" - a vision that aligns with community-identified priorities of safety, health, freedom, community, and positive experiences. This technical assistance built upon the Electrify San Jose: Framework for Existing Building Electrification to identify actionable strategies to make single- and multi-family buildings both energy-efficient and all-electric. This report is intended to provide the San Jose Climate Smart team and their partners with relevant data, insights, and actionable analysis to aid in-depth and nuanced engagements with key stakeholders. In particular, the findings in this report highlight opportunities and challenges for San Jose City Council, residents, building owners, developers, financial institutions, and utility partners instrumental in building support and earning buy-in for energy efficiency and electrification upgrades in existing buildings.

29 ENERGY PLANNING, POLICY, AND ECONOMY↗
DOE OSTI2024

Equitable Strategies for Residential Building Energy Efficiency and Electrification in San José, California [Slides]

Hotter summers, heat waves, wildfires, and droughts are already affecting San Jose residents, with historically marginalized communities impacted first and worst. The City of San Jose has ambitious goals to make the city climate-neutral by 2030 and serve as an example for cities to accelerate climate action around the world. Electrifying and decarbonizing residential buildings are important priorities to achieve San Jose's plans to reach carbon neutrality while enabling residents to live the "Good Life 2.0" - a vision that aligns with community-identified priorities of safety, health, freedom, community, and positive experiences. This technical assistance built upon the Electrify San Jose: Framework for Existing Building Electrification to identify actionable strategies to make single- and multi-family buildings both energy-efficient and all-electric. This report is intended to provide the San Jose Climate Smart team and their partners with relevant data, insights, and actionable analysis to aid in-depth and nuanced engagements with key stakeholders. In particular, the findings in this report highlight opportunities and challenges for San Jose City Council, residents, building owners, developers, financial institutions, and utility partners instrumental in building support and earning buy-in for energy efficiency and electrification upgrades in existing buildings.

29 ENERGY PLANNING, POLICY, AND ECONOMY↗
DOE OSTI2025

Cold Plasma IC Report

This past year we completed the simulation campaign in support of our magnetospheric cold plasma research project. This project aimed to develop the next-generation particle instruments to measure the properties of the cold particle populations in the Earth’s magnetosphere.

58 GEOSCIENCES↗
DOE OSTI2026

Early_Commisioning_Data

This is very early commissioning data (2019) from the newly established APPL facility at ORNL. Instruments, and technologies are in active development at this stage.

APPL↗
DOE OSTI2024

X-ray Fluorescence Microscopy to Develop Elemental Classifiers and Investigate Elemental Signatures in BALB/c Mouse Intestine a Week after Exposure to 8 Gy of Gamma Rays

Iron redistribution in the intestine after total body irradiation is an established phenomenon. However, in the literature, there are no reports about the use of X-ray fluorescence microscopy or equivalent techniques to generate semi-quantitative 2D maps of iron in sectioned intestine samples from irradiated mice. In this work, we used X-ray fluorescence microscopy (XFM) to map the elemental content of iron as well as phosphorus, sulfur, calcium, copper and zinc in tissue sections of the small intestine from eight-week-old BALB/c male mice that developed gastrointestinal acute radiation syndrome (GI-ARS) in response to exposure to 8 Gray of gamma rays. Seven days after irradiation, we found that the majority of the iron is localized as hot spots in the intercellular regions of the area surrounding crypts and stretching between the outer perimeter of the intestine and the surface cell layer of villi. In addition, this study represents our current efforts to develop elemental cell classifiers that could be used for the automated generation of regions of interest for analyses of X-ray fluorescence maps. Once developed, such a tool will be instrumental for studies of effects of radiation and other toxicants on the elemental content in cells and tissues. While XFM studies cannot be conducted on living organisms, it is possible to envision future scenarios where XFM imaging of single cells sloughed from the human (or rodent) intestine could be used to follow up on the progression of GI-ARS.

X-ray fluorescence microscopy↗
DOE OSTI2020

PSF–NET: A Nonparametric Point-spread Function Model for Ground-based Optical Telescopes

Ground-based optical telescopes are seriously affected by atmospheric turbulence induced aberrations. Understanding properties of these aberrations is important both for instrument design and image restoration method development. Because the point-spread function can reflect performance of the whole optic system, it is appropriate to use the point-spread function to describe atmospheric turbulence induced aberrations. Assuming point-spread functions induced by the atmospheric turbulence with the same profile belong to the same manifold space, we propose a nonparametric point-spread function—PSF–NET. The PSF–NET has a cycle convolutional neural network structure and is a statistical representation of the manifold space of PSFs induced by the atmospheric turbulence with the same profile. Testing the PSF–NET with simulated and real observation data, we find that a well trained PSF–NET can restore any short exposure images blurred by atmospheric turbulence with the same profile. Besides, we further use the impulse response of the PSF–NET, which can be viewed as the statistical mean PSF, to analyze interpretation properties of the PSF–NET. We find that variations of statistical mean PSFs are caused by variations of the atmospheric turbulence profile: as the difference of the atmospheric turbulence profile increases, the difference between statistical mean PSFs also increases. The PSF–NET proposed in this paper provides a new way to analyze atmospheric turbulence induced aberrations, which would benefit the development of new observation methods for ground-based optical telescopes.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2021

Completion of Milestone M3CT-21IN0702028 - Receive Welding Module from IFE (Halden, Norway)

Prior to 2018, the U.S. DOE and the commercial nuclear industry relied upon the Halden Reactor Project’s capability to refabricate and reinstrument previously irradiated fuel rods. This capability has now been lost. This activity is key to recovering that capability and enabling the continuation of critical research on commercial and advanced LWR fuels. This welding module completes the three-module suite the Institute For Energy (IFE) was contracted to deliver to INL. This equipment will be used in FY22 to practice techniques developed at IFE for refabricating and instrumenting prototypical fuel rods.

42 ENGINEERING↗