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DOE OSTI2021

ECO: the Evidence and Conclusion Ontology, an update for 2022

The Evidence and Conclusion Ontology (ECO) is a community resource that provides an ontology of terms used to capture the type of evidence that supports biomedical annotations and assertions. Consistent capture of evidence information with ECO allows tracking of annotation provenance, establishment of quality control measures, and evidence-based data mining. ECO is in use by dozens of data repositories and resources with both specific and general areas of focus. ECO is continually being expanded and enhanced in response to user requests as well as our aim to adhere to community best-practices for ontology development. The ECO support team engages in multiple collaborations with other ontologies and annotating groups. Here we report on recent updates to the ECO ontology itself as well as associated resources that are available through this project. ECO project products are freely available for download from the project website (https://evidenceontology.org/) and GitHub (https://github.com/evidenceontology/evidenceontology). ECO is released into the public domain under a CC0 1.0 Universal license.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2021

Plant single-cell solutions for energy and the environment

Progress in sequencing, microfluidics, and analysis strategies has revolutionized the granularity at which multicellular organisms can be studied. In particular, single-cell transcriptomics has led to fundamental new insights into animal biology, such as the discovery of new cell types and cell type-specific disease processes. However, the application of single-cell approaches to plants, fungi, algae, or bacteria (environmental organisms) has been far more limited, largely due to the challenges posed by polysaccharide walls surrounding these species’ cells. In this perspective, we discuss opportunities afforded by single-cell technologies for energy and environmental science and grand challenges that must be tackled to apply these approaches to plants, fungi and algae. We highlight the need to develop better and more comprehensive single-cell technologies, analysis and visualization tools, and tissue preparation methods. We advocate for the creation of a centralized, open-access database to house plant single-cell data. Finally, we consider how such efforts should balance the need for deep characterization of select model species while still capturing the diversity in the plant kingdom. Investments into the development of methods, their application to relevant species, and the creation of resources to support data dissemination will enable groundbreaking insights to propel energy and environmental science forward.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2022

A primer on artificial intelligence in plant digital phenomics: embarking on the data to insights journey

Artificial intelligence (AI) has emerged as a fundamental component of global agricultural research that is poised to impact on many aspects of plant science. In digital phenomics, AI is capable of learning intricate structure and patterns in large datasets. We provide a perspective and primer on AI applications to phenome research. We propose a novel human-centric explainable AI (X-AI) system architecture consisting of data architecture, technology infrastructure, and AI architecture design. We clarify the difference between post hoc models and 'interpretable by design' models. We include guidance for effectively using an interpretable by design model in phenomic analysis. We also provide directions to sources of tools and resources for making data analytics increasingly accessible. In conclusion, this primer is accompanied by an interactive online tutorial.

60 APPLIED LIFE SCIENCES↗

DOE OSTI2021

Accomplishments and Year-End Performance Report; Wind Energy Program: Fiscal Year 2021

The National Wind Technology Center (NWTC), located at the U.S. Department of Energy's (DOE's) National Renewable Energy Laboratory (NREL) Flatirons Campus, has been a driving force in advancing wind energy technology research worldwide since its designation as a DOE national research center in 1992. Enabled by the Flatirons Campus's world-class facilities, scientists, engineers, analysts, and researchers are pushing the frontiers of science to pursue wind energy innovation. In Fiscal Year (FY) 2021, NREL continued to provide the technical expertise, research capabilities, and industry understanding to support DOE's ambitious climate action and research goals by advancing technology, addressing market and deployment barriers, and driving down costs with more efficient, reliable, and predictable wind energy systems. One of several highlights, NREL received an R&D 100 Special Recognition Award for its Thermoplastic Resin System for Wind Turbine Blades. This breakthrough in the wind turbine manufacturing process will enable the production of recyclable blades that are stronger, longer, and less expensive, while increasing energy capture, decreasing energy and transportation costs, and increasing blade reliability. In a year when the entire U.S. economy struggled to address workforce gaps, an NREL study compared wind industry needs, training programs, and hiring practices with perspectives from students and recent college graduates. Researchers hope that, by pinpointing areas of disconnect, the expectations of employers who have difficulty filling entry-level jobs can better align with the preparation of the potential applicants who find it hard to break into the field. The lab also made numerous new data and modeling resources available in FY 2021. Recent NREL releases include a modeling tool for predicting the power performance and structural loads of wind turbines within a wind farm (FAST.Farm), a computational framework for modeling golden eagle behavior near wind farms, and 20 years of offshore wind data. Updates were also made to the widely used Wind Plant Integrated Systems Design and Engineering Model (WISDEM), which couples engineering and cost models to examine system-level trade-offs. Now, bolstered by a renewed national commitment to tackle climate change and revitalize the U.S. economy through increased investment in clean energy - particularly in offshore wind energy - NREL stands poised to lead the way to a sustainable future that powers the United States with significant levels of reliable, low-cost, accessible wind energy. This report provides an overview of the achievements NREL made on behalf of DOE's Wind Energy Technologies Office (WETO) and other partners during FY 2021 (between Oct. 1, 2020, and Sept. 30, 2021).

Flatirons Campus↗

DOE OSTI2020

Offsite Data Processing for the GlueX Experiment

The Thomas Jefferson National Accelerator Facility (JLab) 12GeV accelerator upgrade completed in 2015 is now producing data at volumes unprecedented for the lab. The resources required to process this data now exceed the capacity of the onsite farm necessitating the use of offsite computing resources for the first time in the history of JLab. GlueX is now utilizing NERSC and PSC for raw data production. Details of the workflow are presented.

Lawrence, David↗

DOE OSTI2020

Policy Considerations When Federating Facilities for Experimental and Observational Data Analysis

Today’s computational, experimental, and observational facilities afford us tremendous opportunities to couple theory and experiment at increasingly large scales. Empirical sensing capabilities are growing dramatically with beam line and detector improvements, and with advances in our ability to deploy large-scale data gathering observations of the natural world. The coupling of computational simulations and analysis to process the data from experimental and observational facilities is giving rise to cross-facility workflows. Such federations of facilities are in fact becoming an explicit requirement for large-scale scientific discovery. As we scale up these pipelines of scientific discovery, each participating facility needs to establish and align policies so that the federation can work seamlessly in an end-to-end manner. This chapter outlines specific policy considerations in enabling the federation of facilities for data analysis. Design choices and vital policy decisions cover the areas of data acquisition and storage, data transfer, computational resource allocation and co-scheduling, seamless federated user access, and cross-cutting governance. By highlighting the explicit and implicit interdependencies between facilities, we aim to provide facility designers and policymakers the information on policy issues to address early in a facility’s operations, thus enabling successful cross-facility federation and improved experimental and observational data analysis outcomes.

Shankar, Mallikarjun (Arjun)↗

DOE OSTI2025

2025 Large Load Literature Review

This literature review catalogs more than 90 publications focused on large loads, and groups the documents and resources thematically into 12 categories, (listed below). The 2026 Large Load Literature Review and Data Sources summary reports are available here: https://emp.lbl.gov/publications/2026-large-load-literature-review -Load forecasting -Data sources -Reliability and resource adequacy -Large load interconnection -Demand flexibility -Generation -Co-location -Data center location/infrastructure -Large load tariffs -Policy options -Maps and tools -Design and operations

97 MATHEMATICS AND COMPUTING↗

DOE OSTI2021

Enabling discovery data science through cross-facility workflows

Experimental and observational instruments for scientific research (such as light sources, genome sequencers, accelerators, telescopes and electron microscopes) increasingly require High Performance Computing (HPC) scale capabilities for data analysis and workflow processing. Next-generation instruments are being deployed with higher resolutions and faster data capture rates, creating a big data crunch that cannot be handled by modest institutional computing resources. Often these big data analysis pipelines also require near real-time computing and have higher resilience requirements than the simulation and modeling workloads more traditionally seen at HPC centers. While some facilities have enabled workflows to run at a single HPC facility, there is a growing need to integrate capabilities across HPC facilities to enable cross-facility workflows, either to provide resilience to an experiment, increase analysis throughput capabilities, or to better match a workflow to a particular architecture. In this paper we describe the barriers to executing complex data analysis workflows across HPC facilities and propose an architectural design pattern for enabling scientific discovery using cross-facility workflows that includes orchestration services, application programming interfaces (APIs), data access and co-scheduling.

Antypas, Katerina B.↗

DOE OSTI2021

Lidar Buoy Data Dictionary: For the 2020 – 2021 California Deployments

Pacific Northwest National Laboratory (PNNL) manages two AXYS WindSentinel™ buoys (Buoys #120 and #130) on behalf of the U.S. Department of Energy (DOE) that collect a comprehensive set of meteorological and oceanographic (metocean) data to support resource characterization for wind energy offshore. The buoys have been deployed off the California coast in partnership with the Bureau of Ocean Energy Management (BOEM) from September 2020 through October 2021. One buoy was deployed within the Morro Bay Call Area offshore central California; the other buoy was deployed within the Humboldt Call Area off the coast of northern California. The measurements from the buoys are used to characterize the metocean conditions near potential locations for offshore wind lease areas and are uploaded to DOE’s Data Archive and Portal (DAP). Plots are updated on the DAP webpage to visualize the recent metocean measurements. This document serves as a data dictionary – or reference guide – for understanding and interpreting the data available from the buoys. This document includes: (1) specifications for the buoy instrumentation (Section 2.0) (2) description of each plot and definition of measured parameters (Section 3.0) (3) description of data files and naming convention (Appendix A) (4) reference guide of measurements and variables (Appendix B).

17 WIND ENERGY↗

DOE OSTI2025

LandScan HD: a high-resolution gridded ambient population methodology for the world

Unwarned population distributions accounting for routine human activities are needed to address many global human security challenges, including disasters, conflict, and infrastructure demand. LandScan High Definition (LSHD) supports this need through gridded ambient population estimates that measure average human presence between daytime and nighttime at a high spatial resolution of 3 arcseconds (approximately 90 m). Although LSHD has traditionally been produced on a country-specific basis, advances in global foundational data and computational resources now enable scaling its methodology to the world. Combining aspects of top-down and bottom-up gridded population methods, LSHD allocates subnational population totals from authoritative statistics to built-up areas based on occupancy estimates for multiple facility types (e.g., residential, commercial) and then reaggregates these estimates to a global population grid. We scale this approach by organizing the LSHD data stack into a 1° resolution tileset of vector analytic features, enabling an efficient and repeatable workflow for all countries worldwide. Examining the Philippines as an output of the global LSHD baseline dataset, we contrast unwarned and residential (WorldPop) population distributions by (1) exploring a practical application of flood risk assessment and (2) evaluating their congruence with outcomes of collective human activities (subnational CO 2 emissions). Finally, we discuss plans to address current LSHD limitations through data/modeling and uncertainty quantification improvements and provide outlook for workflow automation and extending the model to social, demographic and economic population characteristics.

Building morphology↗

DOE OSTI2022

Mining G.O.L.D. (Geothermal Opportunities Leveraged Through Data): Exploring Synergies Between the Geothermal and Mining Industries

This report analyzes potential collaborations between the geothermal and locatable mineral industries (focused on the portion of the Basin and Range Province within Nevada, United States of America). The objectives of this study included analyzing: 1. The type and quality of data collected by the locatable mineral industry to determine feasibility for geothermal resource exploration; 2. The regulatory pathways and potential barriers that could prevent development of geothermal resources discovered via a mining claim (and vice versa) in the United States; 3. The historical development of geothermal resources discovered via mineral exploration data in the United States and illustrations of co-located mining and geothermal power projects; 4. The value propositions for both the locatable mineral and the geothermal industries to collaborate. This article concludes that many of the data collected by the mining industry as part of locatable mineral exploration (e.g., copper, gold, lithium) would also be useful for identifying and developing previously unknown geothermal resources (and in some notable cases, already have led to geothermal resource development). In addition, for minimal costs, the mining industry could catalogue these data and potentially monetize the data itself or use the data in the future to develop a geothermal project. Leveraging these locatable mineral data to develop geothermal resources and/or co-located minerals and geothermal resources would represent significant cost savings when compared to developing geothermal resources under a business-as-usual scenario as well as compared to current generating technologies (e.g., diesel-powered generators) employed at remote mining operations. Ultimately, leveraging mining industry data, knowledge, and expertise serves to effectively expand the geothermal exploration workforce, increase the rate of geothermal resource discovery, and potentially reduce geothermal electricity's levelized cost of energy (LCOE) by 23%-29%.

15 GEOTHERMAL ENERGY↗

DOE OSTI2023

Specifications and a Prototype Software to Demonstrate a Data Catalog for Hanford Datasets

Environmental management activities at the Hanford Site produce extensive data about site conditions, contaminants, and cleanup activities. Managing, archiving, and accessing that data requires a high degree of collaboration among site contractors and a high level of awareness by project managers and staff. The Hanford Site has a range of databases (e.g., Hanford Environmental Information System [HEIS]) and their associated user interfaces (e.g., Environmental Dashboard Application [EDA], Virtual Library [VL]), as well as other document management systems (e.g., Integrated Document Management System [IDMS]). However, Hanford lacks a single unified resource to find data (which itself comes in multiple formats) amongst the multiple disparate systems, not to mention ad hoc data not contained in an official repository/database.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2025

Bayesian inference analysis of jet quenching using inclusive jet and hadron suppression measurements

The JETSCAPE Collaboration reports a new determination of the jet transport parameter $\hat{q}$ in the quark-gluon plasma (QGP) using Bayesian inference, incorporating all available inclusive hadron and jet yield suppression data measured in heavy-ion collisions at the BNL Relativistic Heavy Ion Collider (RHIC) and the CERN Large Hadron Collider (LHC). This multi-observable analysis extends the previously published JETSCAPE Bayesian inference determination of $\hat{q}$, which was based solely on a selection of inclusive hadron suppression data. jetscape is a modular framework incorporating detailed dynamical models of QGP formation and evolution, and jet propagation and interaction in the QGP. Virtuality-dependent partonic energy loss in the QGP is modeled as a thermalized weakly coupled plasma, with parameters determined from Bayesian calibration using soft-sector observables. This Bayesian calibration of $\hat{q}$ utilizes active learning, a machine-learning approach, for efficient exploitation of computing resources. The experimental data included in this analysis span a broad range in collision energy and centrality, and in transverse momentum. In order to explore the systematic dependence of the extracted parameter posterior distributions, several different calibrations are reported, based on combined jet and hadron data; on jet or hadron data separately; and on restricted kinematic or centrality ranges of the jet and hadron data. Tension is observed in comparison of these variations, providing new insights into the physics of jet transport in the QGP and its theoretical formulation.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

DOE OSTI2022

Data used in manuscript "Quantifying Subsurface Flow and Solute Transport in a Snowmelt-recharged Hillslope with Multiyear Water Balance", submitted to Water Resources Research on 5-26-2022

Data in this package were used to calculate subsurface flow and solute (specifically dissolved nitrogen) transport in the Pumphouse Lower Montane (PLM) hillslope. These data are included in separate CSV files associated with each figure presented in the manuscript. The files describe site locations and elevations, weather data (air temperatures and precipitation), modeled evapotranspiration, time dependent groundwater elevations, calculated annual subsurface flow, hydraulic conductivity values, time trends in subsurface flow within different zones, pore water concentrations of total dissolve nitrogen (TDN), rates of TDN transport, soil water matric potentials following snowmelt, soil water contents during drainage, and evapotranspiration calculated by soil water mass balance versus by CLM4 model.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2024

CG-Kit: Code Generation Toolkit for performant and maintainable variants of source code applied to Flash-X hydrodynamics simulations

CG-Kit is a new Code Generation tool-Kit that we have developed as a part of the solution for portability and maintainability for multiphysics computing applications. The development of CG-Kit is rooted in the urgent need created by the shifting landscape of high-performance computing platforms and the algorithmic complexities of a particular large-scale multiphysics application: Flash-X. To efficiently use computing resources on a heterogeneous node, an application must have a map of computation to resources and a mechanism to move the data and computation to the resources according to the map. Most existing performance portability solutions are focussed on abstracting the expression of computations so that a unified source code can be specialized to run on different resources. However, such an approach is insufficient for a code like Flash-X, which has a multitude of code components that can be assembled in various permutations and combinations to form different instances of applications. Similar challenges apply to any code that has composability, where a single specified way of apportioning work among devices may not be optimal. Additionally, use cases arise where the optimal control flow of computation may differ for different devices while the underlying numerics remain identical. This combination leads to unique challenges including handling an existing large code base in Fortran and/or C/C++, subdivision of code into a great variety of units supporting a wide range of physics and numerical methods, different parallelization techniques for distributed and shared memory systems and accelerator devices, and heterogeneity of computing platforms requiring coexisting variants of parallel algorithms. All of these challenges demand that scientific software developers apply existing knowledge about domain applications, algorithms, and computing platforms to determine custom abstractions and granularity for code generation. There is a critical lack of tools to tackle those problems. CG-Kit is designed to fill this gap by providing a user with the ability to express their desired control flow and computation-to-resource map in the form a pseudocode-like recipe. It consists of standalone tools that can be combined into highly specific and, we argue, highly effective portability and maintainability toolchains. Here we present the design of our new tools: parametrized source trees, control flow graphs, and recipes. The tools are implemented in Python. They are agnostic to the programming language of the source code targeted for code generation. In conclusion, we demonstrate the capabilities of the toolkit with two examples, first, multithreaded variants of the basic AXPY operation, and second, variants of parallel algorithms within a hydrodynamics solver, called Spark, from Flash-X that operates on block-structured adaptive meshes.

Algorithmic portability↗

DOE OSTI2024

Towards a RAG-based summarization for the Electron Ion Collider

Abstract The complexity and sheer volume of information — encompassing documents, papers, data, and other resources — from large-scale experiments demand significant time and effort to navigate, making the task of accessing and utilizing these varied forms of information daunting, particularly for new collaborators and early-career scientists.To tackle this issue, a Retrieval Augmented Generation (RAG)-based Summarization AI for EIC (RAGS4EIC) is under development. This AI-Agent not only condenses information but also effectively references relevant responses, offering substantial advantages for collaborators. Our project involves a two-step approach: first, querying a comprehensive vector database containing all pertinent experiment information; second, utilizing a Large Language Model (LLM) to generate concise summaries enriched with citations based on user queries and retrieved data. We describe the evaluation methods that use RAG assessments (RAGAs) scoring mechanisms to assess the effectiveness of responses. Furthermore, we describe the concept of prompt template based instruction-tuning which provides flexibility and accuracy in summarization. Importantly, the implementation relies on LangChain [1], which serves as the foundation of our entire workflow. This integration ensures efficiency and scalability, facilitating smooth deployment and accessibility for various user groups within the Electron Ion Collider (EIC) community. This innovative AI-driven framework not only simplifies the understanding of vast datasets but also encourages collaborative participation, thereby empowering researchers. As a demonstration, a web application has been developed to explain each stage of the RAG Agent development in detail. The application can be accessed athttps://rags4eic-ai4eic.streamlit.app.[A tagged version of the source code can be found inhttps://github.com/ai4eic/EIC-RAG-Project/releases/tag/AI4EIC2023_PROCEEDING.]

Instruments & Instrumentation↗

DOE OSTI2025

Enabling pan-repository reanalysis for big data science of public metabolomics data

Public untargeted metabolomics data is a growing resource for metabolite and phenotype discovery; however, accessing and utilizing these data across repositories pose significant challenges. Therefore, here we develop pan-repository universal identifiers and harmonized cross-repository metadata. This ecosystem facilitates discovery by integrating diverse data sources from public repositories including MetaboLights, Metabolomics Workbench, and GNPS/MassIVE. Our approach simplified data handling and unlocks previously inaccessible reanalysis workflows, fostering unmatched research opportunities.

El Abiead, Yasin↗

DOE OSTI2022

Closed Loop Pumped Storage Hydropower Resource Assessment of the United States

The data includes a geospatial and spreadsheet representation of a resource analysis for closed loop pumped storage systems across the Continental United States, Alaska, Hawaii, and Puerto Rico. The data includes energy storage potential, water volume, distance from source to storage, hydraulic head, dollars per kilowatt of storage, and transmission spurline cost for each pumped storage hydropower (PHS) reservoir. Each reservoir represented in this dataset is represented on potential 10 hour storage duration PSH system comprised of two reservoirs. Units of measure are laid out in the dataset. Pumped storage hydropower (PSH) represents the bulk of the United States' current energy storage capacity: 23 gigawatts (GW) of the 24 GW national total (Denholm et al. 2021). This capacity was largely built between 1960 and 1990. PSH is a mature and proven method of energy storage with competitive round-trip efficiency and long life spans. These qualities make PSH a very attractive potential solution to energy storage needs, particularly for longer-duration storage (8 hours or more); such storage will be crucial to bridge gaps in electricity production as variable wind and solar production continue to comprise an ever-larger portion of the United States' energy portfolio. This study seeks to better understand the technical potential for PSH development in the United States by developing a national-scale resource assessment for closed-loop PSH. For more information, please refer to the Closed Loop Pumped Storage Hydropower Resource Assessment for the United States linked in the resources.

Array↗