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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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DOE OSTI2021

Congenital toxoplasmosis in humans: an update of worldwide rate of congenital infections

Abstract The morbidity due to congenital toxoplasmosis in humans is very high. Most of these infected children are likely to develop symptoms of clinical toxoplasmosis. Sequelae in fetus resulting from Toxoplasma gondii infections in women who become infected with this parasite during pregnancy can be devastating and enormous efforts are directed in some countries to prevent these consequences. Here, an update on congenital toxoplasmosis in humans, especially the rate of congenital infections in humans worldwide, is provided. Although several countries have surveillance programmes, most information on the rate of congenital transmission is from France and Brazil. Because of compulsory national screening programme in France to detect and treat women with recently acquired T. gondii infection with anti-toxoplasma therapy, the rate of congenital transmission and the severity of disease in children are declining. Infections by this parasite are widely prevalent in Brazil. The severity of clinical toxoplasmosis in Brazilian children is very high and may be associated with the genetic characteristics of T. gondii isolates prevailing in animals and humans in Brazil. Virtually little or no information is available on this topic from China, India and other countries in Asia.

Parasitology↗
DOE OSTI2021

PreMevE Update: Forecasting Ultra-Relativistic Electrons Inside Earth's Outer Radiation Belt

Energetic electrons inside Earth's Van Allen belts pose a major radiation threat to spaceborne electronics that often play vital roles in modern society. Ultra-relativistic electrons with energies greater than or equal to two megaelectron-volt (MeV) are of particular interest, and thus forecasting these ≥2 MeV electrons has a significant meaning to all space sectors. Here, we update the latest development of the predictive model for MeV electrons in the outer radiation belt. The new version, called PREdictive MEV Electron (PreMevE)-2E, forecasts ultra-relativistic electron flux distributions across the outer belt, with no need for in situ measurements of the trapped MeV electron population except at the geosynchronous orbit (GEO). Model inputs include precipitating electrons observed in low-Earthorbits by NOAA satellites, upstream solar wind speeds and densities from solar wind monitors, as well as ultra-relativistic electrons measured by one Los Alamos GEO satellite. We evaluated 32 supervised machine learning models that fall into four different classes of linear and neural network architectures, and successfully tested ensemble forecasting by using groups of top-performing models. All models are individually trained, validated, and tested by in situ electron data from NASA's Van Allen Probes mission. It is shown that the final ensemble model outperforms individual models at most L-shells, and this PreMevE-2E model can provide 25-h (~1-day) and 50-h (~2-day) forecasts with high mean performance efficiency and correlation values. Our results also suggest that this new model is dominated by nonlinear components at L-shells <~4 for ultra-relativistic electrons, different from the dominance of linear components for 1 MeV electrons as previously discovered.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2024

AGU Publications Updates Authorship Policy to Foster Greater Equity and Transparency in Global Research Collaborations

AGU Publications encourages research collaborations between regions, countries, and communities. When well-resourced researchers complete research or field work in low-resourced settings while excluding local communities or researchers from the process, this can be referred to as parachute science or helicopter research. To help address concerns of parachute science and to promote greater equity and transparency in global research collaborations, AGU Publications has updated its authorship policy across its scholarly journals. The implementation of this policy follows a successful 18-month pilot at JGR: Biogeosciences. For research completed in low-resourced regions, authors are encouraged to include a disclosure statement pertaining to the ethical and scientific considerations of their research collaborations.

99 GENERAL AND MISCELLANEOUS↗
DOE OSTI2022

XXL-HSC: An updated catalogue of high-redshift ( z ≥ 3.5) X-ray AGN in the XMM-XXL northern field

X-rays offer a reliable method to identify active galactic nuclei (AGNs). However, in the high-redshift Universe, X-ray AGNs are poorly sampled due to their relatively low space density and the small areas covered by X-ray surveys. In addition to wide-area X-ray surveys, it is important to have deep optical data in order to locate the optical counterparts and determine their redshifts. Here, in this work, we built a high-redshift (z ≥ 3.5) X-ray-selected AGN sample in the XMM-XXL northern field using the most updated [0.5–2 keV] catalogue along with a plethora of new spectroscopic and multi-wavelength catalogues, including the deep optical Subaru Hyper Suprime-Cam (HSC) data, reaching magnitude limits i ~ 26 mag. We selected all the spectroscopically confirmed AGN and complement this sample with high-redshift candidates that are HSC g- and r-band dropouts. To confirm the dropouts, we derived their photometric redshifts using spectral energy distribution techniques. We obtained a sample of 54 high-z sources (28 with spec-z), the largest in this field so far (almost three times larger than in previous studies), and we estimated the possible contamination and completeness. We calculated the number counts (log N-log S) in different redshift bins and compared our results with previous studies and models. We provide the strongest high-redshift AGN constraints yet at bright fluxes (f 0.5 – 2 keV > 10 –15 erg s –1 cm –2 ). The samples of z ≥ 3.5, z ≥ 4, and z ≥ 5 are in agreement with an exponential decline model similar to that witnessed at optical wavelengths. Our work emphasises the importance of using wide-area X-ray surveys with deep optical data to uncover high-redshift AGNs.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2024

Updates to the ATLAS Data Carousel Project

The High Luminosity upgrade to the LHC (HL-LHC) is expected to deliver scientific data at the multi-exabyte scale. In order to address this unprecedented data storage challenge, the ATLAS experiment launched the Data Carousel project in 2018. Data Carousel is a tape-driven workflow whereby bulk production campaigns with input data resident on tape are executed by staging and promptly processing a sliding window to disk buffer such that only a small fraction of inputs are pinned on disk at any one time. Data Carousel is now in production for ATLAS in Run3. In this paper, we provide updates on recent Data Carousel R&D projects, including data-on-demand and tape smart writing. Data-on-demand removes from disk data that has not been accessed for a predefined period, when users request them, they will be either staged from tape or recreated by following the original production steps. Tape smart writing employs intelligent algorithms for file placement on tape in order to retrieve data back more efficiently, which is our long term strategy to achieve optimal tape usage in Data Carousel.

42 ENGINEERING↗
DOE OSTI2026

PIPS-2025: an updated practical pressure scale for the large-volume presses

In 1997, AIRAPT recommended a set of room-temperature pressure reference points (PRPs) for the large-volume press (LVP) community, known as the Practical International Pressure Scale (PIPS-97). With recent AIRAPT-recommended ruby scale Ruby2020 for diamond-anvil cell (DAC) experiments, it is now necessary to re-examine PIPS-97 for consistency with the DAC pressure scale. Here, we reconstruct equations of state (EOSs) for NaCl and Au that are explicitly tied to Ruby2020 and recalculate the PRPs using these EOSs. The revised PRP values are given. GaAs is removed from the PRP list because of the complexity of its phase transitions. The ZnS value, although retained, requires further investigation. Overall, the revised pressures are systematically higher than PIPS-97 by up to 4% at 35 GPa. We propose that this updated set of PRPs, referred to as PIPS-2025, be adopted for LVP experiments to improve pressure consistency between the LVP and DAC communities.

Large volume press↗
DOE OSTI2023

Updated constraints on primordial black hole evaporation

The Hawking evaporation process, leading to the production of detectable particle species, constrains the abundance of light black holes, presumably of primordial origin. Here, we reconsider and correct constraints from soft gamma-ray observations, including of the gamma-ray line, at 511 keV, produced by electron-positron pair-annihilation, where positrons originate from black hole evaporation. First, we point out that the INTEGRAL detection of the Large Magellanic Cloud provides one of the strongest bounds attainable with present observations; and that future MeV gamma-ray telescopes, such as GECCO, will greatly enhance such constraints. Second, we discuss issues with previous limits from the isotropic flux at 511 keV and we provide updated, robust constraints from recent measurements of the diffuse Galactic soft gamma-ray emission and from the isotropic soft gamma-ray background.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2021

Updated magnetized transport coefficients: impact on laser-plasmas with self-generated or applied magnetic fields

Errors in the Epperlein and Haines (1986 Phys. Fluids ) transport coefficients were recently found at low electron magnetizations, with new magnetic transport coefficients proposed simultaneously by two teams (Sadler et al 2021 Phys. Rev. Lett. and Davies et al 2021 Phys. Plasmas ); these two separate sets of updated coefficients are shown in this paper to be in agreement. Here, the importance of these new coefficients in laser-plasmas with either self-generated or applied magnetic fields is demonstrated. When an external magnetic field is applied, the cross-gradient-Nernst term twists the field structure; this twisting is reduced by the new coefficients in the low magnetization regime. For plasmas where only self-generated magnetic fields are present, the new coefficients are found to result in the magnetic field moving with the Righi–Leduc heat-flow, enhancing the impact of MHD. Simulations of Biermann battery magnetic fields around ICF hot-spot perturbations are presented, with cross-gradient-Nernst transport increasing spike penetration.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗
DOE OSTI2024

Predictive modeling of NSTX discharges with the updated multi-mode anomalous transport module

Abstract The objective of this study is twofold: firstly, to demonstrate the consistency between the anomalous transport results produced by updated Multi-Mode Model (MMM) version 9.0.4 and those obtained through gyrokinetic simulations; and secondly, to showcase MMM’s ability to predict electron and ion temperature profiles in low aspect ratio, high beta NSTX discharges. MMM encompasses a range of transport mechanisms driven by electron and ion temperature gradients, trapped electrons, kinetic ballooning, peeling, microtearing, and drift resistive inertial ballooning modes. These modes within MMM are being verified through corresponding gyrokinetic results. The modes that potentially contribute to ion thermal transport are stable in MMM, aligning with both experimental data and findings from linear CGYRO simulations. The isotope effects on these modes are also studied and higher mass is found to be stabilizing, consistent with the experimental trend. The electron thermal power across the flux surface is computed within MMM and compared to experimental measurements and nonlinear CGYRO simulation results. Specifically, the electron temperature gradient modes (ETGM) within MMM account for 2.0 MW of thermal power, consistent with experimental findings. It is noteworthy that the ETGM model requires approximately 5.0 ms of computation time on a standard desktop, while nonlinear CGYRO simulations necessitate 8.0 h on 8 K cores. MMM proves to be highly computationally efficient, a crucial attribute for various applications, including real-time control, tokamak scenario optimization, and uncertainty quantification of experimental data.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗
DOE OSTI2020

An updated LLVM-based quantum research compiler with further OpenQASM support

Abstract Quantum computing is a rapidly growing field with the potential to change how we solve previously intractable problems. Emerging hardware is approaching a complexity that requires increasingly sophisticated programming and control. Scaffold is an older quantum programming language that was originally designed for resource estimation for far-future, large quantum machines, and ScaffCC is the corresponding LLVM-based compiler. For the first time, we provide a full and complete overview of the language itself, the compiler as well as its pass structure. While previous works Abhari et al (2015 Parallel Comput. 45 2–17), Abhari et al (2012 Scaffold: quantum programming language https://cs.princeton.edu/research/techreps/TR-934-12 ), have piecemeal descriptions of different portions of this toolchain, we provide a more full and complete description in this paper. We also introduce updates to ScaffCC including conditional measurement and multidimensional qubit arrays designed to keep in step with modern quantum assembly languages, as well as an alternate toolchain targeted at maintaining correctness and low resource count for noisy-intermediate scale quantum (NISQ) machines, and compatibility with current versions of LLVM and Clang. Our goal is to provide the research community with a functional LLVM framework for quantum program analysis, optimization, and generation of executable code.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗
DOE OSTI2020

Non-coding RNAs: update on mechanisms and therapeutic targets from the ESC Working Groups of Myocardial Function and Cellular Biology of the Heart

Abstract Vast parts of mammalian genomes are actively transcribed, predominantly giving rise to non-coding RNA (ncRNA) transcripts including microRNAs, long ncRNAs, and circular RNAs among others. Contrary to previous opinions that most of these RNAs are non-functional molecules, they are now recognized as critical regulators of many physiological and pathological processes including those of the cardiovascular system. The discovery of functional ncRNAs has opened up new research avenues aiming at understanding ncRNA-related disease mechanisms as well as exploiting them as novel therapeutics in cardiovascular therapy. In this review, we give an update on the current progress in ncRNA research, particularly focusing on cardiovascular physiological and disease processes, which are under current investigation at the ESC Working Groups of Myocardial Function and Cellular Biology of the Heart. This includes a range of topics such as extracellular vesicle-mediated communication, neurohormonal regulation, inflammation, cardiac remodelling, cardio-oncology as well as cardiac development and regeneration, collectively highlighting the wide-spread involvement and importance of ncRNAs in the cardiovascular system.

Bär, Christian↗
DOE OSTI2020

CCCP and MENeaCS: (updated) weak-lensing masses for 100 galaxy clusters

ABSTRACT Large area surveys continue to increase the samples of galaxy clusters that can be used to constrain cosmological parameters, provided that the masses of the clusters are measured robustly. To improve the calibration of cluster masses using weak gravitational lensing we present new results for 48 clusters at 0.05 < z < 0.15, observed as part of the Multi Epoch Nearby Cluster Survey, and re-evaluate the mass estimates for 52 clusters from the Canadian Cluster Comparison Project. Updated high-fidelity photometric redshift catalogues of reference deep fields are used in combination with advances in shape measurements and state-of-the-art cluster simulations, yielding an average systematic uncertainty in the lensing signal below 5 per cent, similar to the statistical uncertainty for our cluster sample. We derive a scaling relation with Planck measurements for the full sample and find a bias in the Planck masses of 1 − b = 0.84 ± 0.04 (stat) ±0.05 (syst). We find no statistically significant trend of the mass bias with redshift or cluster mass, but find that different selections could change the bias by up to 0.07. We find a gas fraction of 0.139 ± 0.014 (stat) for eight relaxed clusters in our sample, which can also be used to infer cosmological parameters.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2023

SALT2 versus SALT3: updated model surfaces and their impacts on type Ia supernova cosmology

ABSTRACT For the past decade, SALT2 has been the most common model used to fit Type Ia supernova (SN Ia) light curves for dark energy analyses. Recently, the SALT3 model was released, which upgraded a number of model features but has not yet been used for measurements of dark energy. Here, we evaluate the impact of switching from SALT2 to SALT3 for a SN cosmology analysis. We train SALT2 and SALT3 on an identical training sample of 1083 well-calibrated Type Ia supernovae, ensuring that any differences found come from the underlying model framework. We publicly release the results of this training (the SALT ‘surfaces’). We then run a cosmology analysis on the public Dark Energy Survey 3-Yr Supernova data sample (DES-SN3YR), and on realistic simulations of those data. We provide the first estimate of the SN + CMB systematic uncertainty arising from the choice of SALT model framework (i.e. SALT2 versus SALT3), Δw = + 0.001 ± 0.005 – a negligible effect at the current level of dark energy analyses. We also find that the updated surfaces are less sensitive to photometric calibration uncertainties than previous SALT2 surfaces, with the average spectral energy density dispersion reduced by a factor of two over optical wavelengths. This offers an opportunity to reduce the contribution of calibration errors to SN cosmology uncertainty budgets.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2026

The Dark Energy Survey supernova program: a reanalysis of cosmology results and evidence for evolving dark energy with an updated Type Ia supernova calibration

We present improved cosmological constraints from a re-analysis of the Dark Energy Survey (DES) 5-year sample of Type Ia supernovae (DES-SN5YR). This re-analysis includes an improved photometric cross-calibration, recent white dwarf observations to cross-calibrate between DES and low-redshift surveys, retraining the salt3 light-curve model and fixing a numerical approximation in the host-galaxy colour law. Our fully recalibrated sample, which we call DES-Dovekie, comprises ~1600 likely Type Ia SNe from DES and ~200 low-redshift SNe from other surveys. With DES-Dovekie, we obtain Ω m = 0.330 ± 0.015 in flat Lambda-cold dark matter (⁠ΛCDM) which changes Ω m by –0.022 compared to DES-SN5YR. Combining DES-Dovekie with cosmic microwave background data from Planck, Atacama Cosmology Telescope, and South Pole Telescope and the DESI DR2 measurements in a flat CDM cosmology, we find ω 0 = –0.803 ± 0.054 and ω a = –0.72 ± 0.21⁠. Our results hold a significance of 3.2σ, reduced from 4.2σ for DES-SN5YR, to reject the null hypothesis that the data are compatible with the cosmological constant. This significance is equivalent to a Bayesian model preference odds of approximately 5:1 in favour of the flat ω 0 ω a CDM model. Using generally accepted thresholds for model preference, our updated data exhibits only a weak preference for evolving dark energy.

dark energy↗
DOE OSTI2021

ECO: the Evidence and Conclusion Ontology, an update for 2022

The Evidence and Conclusion Ontology (ECO) is a community resource that provides an ontology of terms used to capture the type of evidence that supports biomedical annotations and assertions. Consistent capture of evidence information with ECO allows tracking of annotation provenance, establishment of quality control measures, and evidence-based data mining. ECO is in use by dozens of data repositories and resources with both specific and general areas of focus. ECO is continually being expanded and enhanced in response to user requests as well as our aim to adhere to community best-practices for ontology development. The ECO support team engages in multiple collaborations with other ontologies and annotating groups. Here we report on recent updates to the ECO ontology itself as well as associated resources that are available through this project. ECO project products are freely available for download from the project website (https://evidenceontology.org/) and GitHub (https://github.com/evidenceontology/evidenceontology). ECO is released into the public domain under a CC0 1.0 Universal license.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2023

JGI Plant Gene Atlas: an updateable transcriptome resource to improve functional gene descriptions across the plant kingdom

Abstract Gene functional descriptions offer a crucial line of evidence for candidate genes underlying trait variation. Conversely, plant responses to environmental cues represent important resources to decipher gene function and subsequently provide molecular targets for plant improvement through gene editing. However, biological roles of large proportions of genes across the plant phylogeny are poorly annotated. Here we describe the Joint Genome Institute (JGI) Plant Gene Atlas, an updateable data resource consisting of transcript abundance assays spanning 18 diverse species. To integrate across these diverse genotypes, we analyzed expression profiles, built gene clusters that exhibited tissue/condition specific expression, and tested for transcriptional response to environmental queues. We discovered extensive phylogenetically constrained and condition-specific expression profiles for genes without any previously documented functional annotation. Such conserved expression patterns and tightly co-expressed gene clusters let us assign expression derived additional biological information to 64 495 genes with otherwise unknown functions. The ever-expanding Gene Atlas resource is available at JGI Plant Gene Atlas (https://plantgeneatlas.jgi.doe.gov) and Phytozome (https://phytozome.jgi.doe.gov/), providing bulk access to data and user-specified queries of gene sets. Combined, these web interfaces let users access differentially expressed genes, track orthologs across the Gene Atlas plants, graphically represent co-expressed genes, and visualize gene ontology and pathway enrichments.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2024

Genomes OnLine Database (GOLD) v.10: new features and updates

The Genomes OnLine Database (GOLD; https://gold.jgi.doe.gov/) at the Department of Energy Joint Genome Institute is a comprehensive online metadata repository designed to catalog and manage information related to (meta)genomic sequence projects. GOLD provides a centralized platform where researchers can access a wide array of metadata from its four organization levels namely Study, Organism/Biosample, Sequencing Project and Analysis Project. GOLD continues to serve as a valuable resource and has seen significant growth and expansion since its inception in 1997. With its expanded role as a collaborative platform, it not only actively imports data from other primary repositories like National Center for Biotechnology Information but also supports contributions from researchers worldwide. This collaborative approach has enriched the database with diverse datasets, creating a more integrated resource to enhance scientific insights. As genomic research becomes increasingly integral to various scientific disciplines, more researchers and institutions are turning to GOLD for their metadata needs. To meet this growing demand, GOLD has expanded by adding diverse metadata fields, intuitive features, advanced search capabilities and enhanced data visualization tools, making it easier for users to find and interpret relevant information. This manuscript provides an update and highlights the new features introduced over the last 2 years.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2025

Updated cosmological constraints on axion dark energy with DESI

Here, we present updated constraints on the parameters of an axion dark energy model, for which we took into account the properties of its characteristic potential and its full cosmological evolution. We show that the values of the axion parameters appear sufficiently constrained by the data, including the latest DESI DR1, and are consistent with the theoretical expectations of a field mass 𝑚 𝑎 in the ultralight regime log⁡(𝑚 𝑎 ⁢𝑐 2 /eV) ≃ −32.60 ±0.12, and an effective energy scale 𝑓 𝑎 close to the reduced Planck energy log⁡(𝑓 𝑎 ⁡/𝑀 Pl ) ≃ −0.28 ± 0.19. Our results also support the idea of dynamical dark energy, although Bayesian evidence still favors the phenomenological dark energy model 𝑤 0 ⁢𝑤 𝑎 over the axion dark energy, with the Bayes factor indicating moderate and weak strength of the evidence, respectively, when the models are compared to the cosmological constant Λ. However, the results suggest that axion dark energy remains a well-motivated model and its parameters may be better constrained if the upcoming DESI data show further evidence for dynamical dark energy.

79 ASTRONOMY AND ASTROPHYSICS↗