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DOE OSTI2024

Genomic analysis and identification of a novel superantigen, SargEY, in Staphylococcus argenteus isolated from atopic dermatitis lesions

During surveillance of Staphylococcus aureus in lesions from patients with atopic dermatitis (AD), we isolated Staphylococcus argenteus, a species registered in 2011 as a new member of the genus Staphylococcus and previously considered a lineage of S. aureus. Genome sequence comparisons between S. argenteus isolates and representative S. aureus clinical isolates from various origins revealed that the S. argenteus genome from AD patients closely resembles that of S. aureus causing skin infections. We previously reported that 17%–22% of S. aureus isolated from skin infections produce staphylococcal enterotoxin Y (SEY), which predominantly induces T-cell proliferation via the T-cell receptor (TCR) Vα pathway. Complete genome sequencing of S. argenteus isolates revealed a gene encoding a protein similar to superantigen SEY, designated as SargEY, on its chromosome. Population structure analysis of S. argenteus revealed that these isolates are ST2250 lineage, which was the only lineage positive for the SEY-like gene among S. argenteus. Recombinant SargEY demonstrated immunological cross-reactivity with anti-SEY serum. SargEY could induce proliferation of human CD4 + and CD8 + T cells, as well as production of TNF-α and IFN-γ. SargEY showed emetic activity in a marmoset monkey model. S arg EY and SET (a phylogenetically close but uncharacterized SE) revealed their dependency on TCR Vα in inducing human T-cell proliferation. Additionally, TCR sequencing revealed other previously undescribed Vα repertoires induced by SEH. S arg EY and SEY may play roles in exacerbating the respective toxin-producing strains in AD.

59 BASIC BIOLOGICAL SCIENCES↗

NASA NTRS1986

Identification of major backscattering sources in trees and shrubs at 10 GHz

A short-range very-fine-resolution FM-CW radar scatterometer has been used to identify the primary contributors to 10-GHz radar backscatter from pine, pin oak, American sycamore and sugar maple trees, and from creeping juniper shrubs. This system provided a range resolution of 11 cm and gave a 16-cm diameter illumination area at the target range of about 4 m. For a pine tree, the needles caused the strongest backscatter as well as the strongest attenuation in the radar signal. Cones, although insignificant contributors to the total backscatter, were more important for backscattering than for attenuation. For the rest of the trees, leaves were the strongest cause of backscattering and attenuation. However, in the absence of leaves, the petioles, small twigs, and branches gave relatively strong backscatter. For American sycamore and sugar maple trees, the fruits did not affect the total backscatter unless they were packed in clusters. For creeping juniper the backscattered energy and attenuation in the radar signal were mainly due to the top two layers of the evergreen scales. The contribution of the tree trunks was not determined.

Zoughi, R.↗

DOE OSTI2022

On Projection of Safe Operation for Grid-Following Inverters - Grid Parameter Estimation

This work investigates the projection of safe operation for grid-following inverters using a reference model. This work applies recursive-least square and model reference adaptive estimation techniques to estimate the unknown grid parameters. The estimated grid parameters are used in a dynamic reference model to project the safe operation of the inverter. This work also demonstrates that the controller nonlinearity and parameter variations can cause unsafe operations, such as unexpected instability at low power levels, namely hidden mode of instability. This instability issue in the nominal operating range may occur for given control parameters in a weak-grid condition. The dynamic reference model for PQ-controlled inverters is applied to analyze this instability issue using the estimated grid parameters. Both adaptive identification techniques can estimate the unknown parameters accurately, and the dynamic reference model can safeguard inverters from an unsafe operation, i.e., hidden instability, by examining the incoming new power setpoints before engaging them to the local controller. The findings are experimentally verified using a small-scale two-level 208 V, 5 kVA inverter feeding a 12 kW NHR 9410 power grid emulator.

Hossen, Tareq↗

NASA NTRS1977

Surface tension induced convection in encapsulated liquid metals in a microgravity environment. Experiment MA-041

The experiment was designed to detect possible convection caused by a steplike compositional variation in a liquid metal in a microgravity environment. Wetting and nonwetting ampoules were used to try to determine the extent of the stirring effects if they were present. Since stirring effects can be caused by temperature gradients, the temperature gradients were minimized. Steplike compositional variation was created by pressure bonding a lead-0.05 atom percent gold alloy to pure lead. Two diffusion temperatures (923 K and 723 K) were used; if no stirring effects were present, it was hoped that the liquid diffusion parameters for gold in lead could be obtained. Two identifical experimental arrangements were used to compare the transport mechanisms of gold in liquid lead in unit gravity and microgravity environments.

Reed, R. E.↗

NASA NTRS1991

Processes of deep terrestrial mantles and cores

Ultrahigh pressure experiments are currently focused on revealing processes occurring deep inside planets. This is in addition to the traditional emphasis on the constitution of planetary interiors, such as the identification of the high pressure perovskite phase of (Mg,Fe)SiO3 as the predominant mineral inside the Earth, and probably Venus. For example, experiments show that the mechanism of geochemical differentiation, separation of partial melts, differs fundamentally in the lower mantles of Earth and Venus than at near surface conditions. In addition to structural transformations, changes in chemical bonding caused by pressure can also be significant for planetary interiors. Measurements of AC and DC electrical conductivity can be obtained at ultrahigh pressures and temperatures, to greater than 80 GPa and 3000 K simultaneously, using the laser heated diamond cell. Anhydrous lower mantle assemblages (perovskite + or - oxide phases) exhibit an electrical conductivity that depends strongly on Fe content. Contrary to traditional assumptions, temperature affects the conductivity of lower mantle assemblages relatively little. The Earth's deep focus seismicity can be explained by the recycling of water into the mantle.

Jeanloz, Raymond↗

NASA NTRS1995

The latitudinal distribution of magnetic holes in the solar wind

A large number of magnetic holes have been found in the Ulysses data during its cruise in the ecliptic. They are interpreted as convecting structures, probably caused by the mirror instability which exists in high beta plasmas with anisotropic temperatures. The characteristics of the holes reflect the solar wind condition of the region in which the holes are formed, and the point of observation may be far removed from where the instability occurs. A preliminary survey appears to indicate that the number of holes has no significant radial dependence. However, the number of holes does appear to increase with increasing heliographic latitude. Yet the large scale solar wind structures with their compression regions disappeared at approximately 57 deg south latitude. Thus any causal relationship between the holes and large scale solar wind structures is questionable. The temperature anisotropy and high beta required by the mirror instability must be generated by other mechanisms. In order to tie the magnetic holes and the mirror instability to their cause, the evolution of their characteristics with heliocentric distance and latitude needs to be investigated. With the progression of Ulysses around the sun a survey will be conducted to ascertain the characteristics of the magnetic holes as a function of heliographic latitude and heliocentric distance. A comparison of the results with the solar wind conditions may lead to the identification of the magnetic hole generating mechanism(s).

Winterhalter, D.↗

NASA NTRS2004

Buffet Load Alleviation

High performance aircraft are, by their very nature, often required to undergo maneuvers involving high angles of attack. Under these conditions unsteady vortices emanating from the wing and the fuselage will impinge on the twin fins (required for directional stability) causing excessive buffet loads, in some circumstances, to be applied to the aircraft. These loads result in oscillatory stresses, which may cause significant amounts of fatigue damage. Active control is a possible solution to this important problem. A full-scale test was carried out on an F/A-18 fuselage and fins using piezoceramic actuators to control the vibrations. Buffet loads were simulated using very powerful electromagnetic shakers. The first phase of this test was concerned with the open loop system identification whereas the second stage involved implementing linear time invariant control laws. This paper looks at some of the problems encountered as well as the corresponding solutions and some results. It is expected that flight trials of a similar control system to alleviate buffet will occur as early as 2001.

Ryall, T. G.↗

DOE OSTI2022

A Reactive Inkjet Printing Process for Fabricating Biodegradable Conductive Zinc Structures

A novel reactive inkjet printing (RIJ) process for fabricating environmentally benign, conductive zinc structures on biodegradable substrates is reported. A precursor consisting of oxidized zinc microparticles is formulated into a viscous ink for high‐resolution, high‐repeatability screen printing. A single RIJ process is performed to selectively dispense an acid‐based oxide etching agent onto the screen‐printed zinc ink to significantly improve its electrical conductivity, up to 4 × 10 4 S m −1 . The RIJ process enables precise control of the amount of deposited etching agent, allowing control of conductivity and avoiding damage caused by excessive acid exposure. The RIJ process deposits the etching agent selectively on the screen‐printed, water‐soluble zinc patterns, thus preserving the print fidelity by avoiding ink smearing that can occur when using a blanket treatment such as submersion. A printed biodegradable antenna with a minimum feature size of 500 μm for use with a batteryless radio frequency identification (RFID) chip is fabricated as demonstration. Due to the higher ink conductivity and improved pattern fidelity, the antenna fabricated by the RIJ process shows a ≈2.2× increase in reading distance compared with a similar antenna that is screen printed and activated using a drop‐casting process.

Sui, Yongkun↗

DOE OSTI2020

The essential effector SCRE1 in Ustilaginoidea virens suppresses rice immunity via a small peptide region

Summary The biotrophic fungal pathogen Ustilaginoidea virens causes rice false smut, a newly emerging plant disease that has become epidemic worldwide in recent years. The U. virens genome encodes many putative effector proteins that, based on the study of other pathosystems, could play an essential role in fungal virulence. However, few studies have been reported on virulence functions of individual U. virens effectors. Here, we report our identification and characterization of the secreted cysteine‐rich protein SCRE1, which is an essential virulence effector in U. virens . When SCRE1 was heterologously expressed in Magnaporthe oryzae , the protein was secreted and translocated into plant cells during infection. SCRE1 suppresses the immunity‐associated hypersensitive response in the nonhost plant Nicotiana benthamiana . Induced expression of SCRE1 in rice also inhibits pattern‐triggered immunity and enhances disease susceptibility to rice bacterial and fungal pathogens. The immunosuppressive activity is localized to a small peptide region that contains an important ‘cysteine‐proline‐alanine‐arginine‐serine’ motif. Furthermore, the scre1 knockout mutant generated using the CRISPR/Cas9 system is attenuated in U. virens virulence to rice, which is greatly complemented by the full‐length SCRE1 gene. Collectively, this study indicates that the effector SCRE1 is able to inhibit host immunity and is required for full virulence of U. virens .

Zhang, Nan↗

NASA NTRS1974

Skylab program payload integration. TO27 sample array

The objective of the TO27 sample array was to determine the change in optical properties of various transmissive windows, mirrors, and diffraction gratings caused by the deposition of contaminants found about the orbital assembly. The expected information to be obtained from the total TO27 sample array program is as follows: (1) effect of space contaminants on transmittance, reflectance, grating efficiency, and polarization; (2) variations in deposition of contaminants due to substrate, solar radiation, period of exposure, direction of exposure, and geometry effects; (3) identification of contaminants and source of evolution; (4) time of contaminant evolution and lingering time; and (5) guidelines for a model of spacecraft contamination.

Muscari, J. A.↗

NASA NTRS1992

Toward the optimization of control of unsteady separation

Regardless of our understanding of the complicated physical process, means can always be found to alter the occurrence and development of unsteady separation. To be able to optimize the control of separation, however, requires the identification of the critical aspects to which the intervention may be focused and achieve the desired result with minimum waste of effort. The Lagrangian analysis of unsteady boundary-layer traces the trajectories of individual fluid particles and reveals the 'bad seeds' that, through extreme deformation in the direction normal to the wall, eventually develop into a virtual barrier and cause the ejection of boundary-layer material into the main stream. It follows logically that separation can be triggered or delayed most effectively by targeting these 'bad seeds.' Since they are normally interior points of the boundary layer, attempts to influence them through the boundary conditions are necessarily indirect. Furthermore, as the strategy has to be the modification of the growing process of the 'bad seeds,' whatever may be the intervention scheme, it needs to be strong enough and early enough. In Shen and Wu, examples of how acceleration/deceleration of the two dimensional body, as well as the moving wall of a rotating cylinder, may affect the development of the bad seed toward separation are shown. In fact it was mentioned therein that the results might be the first step for a feasibility study of the control of unsteady separation. Presented are additional results of applying suction to an impulsively started circular cylinder.

Shen, S. F.↗

NASA NTRS2018

Investigations of Hail Damage Swaths Using Various Satellite Remote Sensing Platforms

Severe thunderstorms that bring damaging winds and large hail can cause significant damage to agricultural crops. Severe thunderstorms can cause upwards of several hundreds of millions of dollars in damage to agricultural areas. Formal ground surveys are not conducted on these areas of damage, like they are for suspected tornado damaged areas. IF ground surveys were conducted, they would likely be time and resources consuming due to their large spatial extent. Satellite remote sensing has been frequently used in identification and analysis of these hail damage swaths. Previous analysis have looked at the simple change in damaged vegetation to looking at the damage areas in satellite imagery with varying spatial resolutions. One study has even looked at the impacts that these damage swaths can have on the land surface, associated fluxes and how they affect numerical weather prediction. Previous studies have focused on using optical remote (VIS, NIR, SWIR) sensing instruments and derived indices, such as Normalized Difference Vegetation Index (NDVI) for analysis. NDVI is used to monitor the health (greenness) of the vegetation. Optical sensors however are limited by sky conditions over the areas they are imaging and certain bands are further limited by the diurnal cycle. These limitations can lead to sometimes upwards of 7 to 10 day gaps of the surface not being imaged, especially during the height of summer convection. One way to obtain more views of the surface, regardless of the sky conditions or time of day is through the use of synthetic aperture radar (SAR). SAR sensors are active instruments that transmit in the microwave portion of the EM spectrum. The surface and its characteristics will determine the amount of energy scattered back to the sensor. The SAR sensors then measure amplitude and phase of wavelength coming back from surface.

Bell, Jordan R.↗

DOE OSTI2021

Line confusion in spectroscopic surveys and its possible effects: shifts in Baryon Acoustic Oscillations position

ABSTRACT Roman Space Telescope will survey about 17 million emission-line galaxies over a range of redshifts. Its main targets are Hα emission-line galaxies at low redshifts (z < 2) and [O iii] emission-line galaxies at high redshifts (z > 2). The Roman Space Telescope will estimate the redshift of these galaxies with single-line identification. This suggests that other emission-line galaxies may be misidentified as the main targets. In particular, it is hard to distinguish between the H β and [O iii] lines as the two lines are close in wavelength and hence the photometric information may not be sufficient to separate them reliably. Misidentifying H β emitter as [O iii] emitter will cause a shift in the inferred radial position of the galaxy by approximately 90 Mpc h−1. This length-scale is similar to the Baryon Acoustic Oscillation (BAO) scale and could shift and broaden the BAO peak, possibly introduce errors in determining the BAO peak position. We qualitatively describe the effect of this new systematic and further quantify it with a light-cone simulation with emission-line galaxies. Our results show a systematic shift in the recovered isotropic BAO positions that depends on the percentage of interlopers (percentage of ${\rm H}\,\beta$) in the sample. The systematic shift can be as large as $0.1{-}0.3\,\mathrm{ per}\,\mathrm{ cent} \, {\rm x}\, {{\%}}{\rm H}\,\beta$ for analysis performed at redshifts z = 1.3−1.9.

79 ASTRONOMY AND ASTROPHYSICS↗

DOE OSTI2026

Global Explainability of A Deep Abstaining Classifier for Cancer Pathology Reports

We present a global explainability method to characterize sources of errors in a real-world multitask deep abstaining classifier (DAC), in the context of cancer histology prediction. Our multitask classifier, currently deployed for automated annotation of cancer pathology reports from NCI-SEER registries, was trained and evaluated on 1.04 million hand-annotated samples and makes simultaneous predictions of cancer site, subsite, histology, laterality, and behavior for each report. The DAC framework enables the model to abstain on ambiguous reports and confusing classes to achieve the target accuracy on the retained (non-abstained) samples, but at the cost of decreased coverage. Requiring 97% accuracy on the histology task caused our model to retain only 22% of all samples, mostly the less ambiguous and common classes. Local explainability with the GradInp technique provided a computationally efficient way of obtaining contextual reasoning for hundreds of thousands of individual predictions. Our method, involving dimensionality reduction of approximately 13000 aggregated local explanations (ALE), offers a tractable path to true global explainability. It enabled identification of sources of errors in histology classification, globally, as hierarchical complexity among classes, label noise, insufficient information, and conflicting evidence. This suggests several strategies for iterative improvement of our DAC, including well-designed exclusion criteria, focused annotation, and reduced penalties for errors involving hierarchically related classes.

59 BASIC BIOLOGICAL SCIENCES↗

NASA NTRS1982

Discovery of a 50 minute binary period and a likely 22 magnitude optical counterpart for the X-ray burster 4U 1915-05

Absorption dips which recur with a period of 2985 s have been observed from the X-ray burst source 4U 1915-05. It is suggested that the dips are caused by obscuration of the X-ray source by material at the point where the gas stream from the companion meets the accretion disk, and that the 2985 s periodicity is the orbital period of the binary system. These observations represent the first direct evidence of the binary nature of X-ray burst sources. In addition, a new optical identification of 4U 1915-05 is suggested: a 22 magnitude candidate observed in a CCD image of the optical field at the arcsec-accurate HRI X-ray position.

Walter, F. M.↗

NASA NTRS1975

A Monte Carlo analysis of the effects of instrumentation errors on aircraft parameter identification

An output error estimation algorithm was used to evaluate the effects of both static and dynamic instrumentation errors on the estimation of aircraft stability and control parameters. A Monte Carlo analysis, using simulated cruise flight data, was performed for a high performance military aircraft, a large commercial transport, and a small general-aviation aircraft. The effects of variations in the information content of the flight data, resulting from two different choices of control input maneuvers, were also determined. The results indicate that unmodeled instrumentation errors can cause inaccuracies in the estimated parameters which are comparable to their nominal values. Control input errors and angular accelerometer lags were found to be most significant of the instrumentation errors evaluated, and the perturbations they produce are much larger than those arising from the combined effects of static errors and white noise in the output response measurements.

Bryant, W. H.↗

DOE OSTI2020

Identification of a Covalent Molecular Inhibitor of Anti-apoptotic BFL-1 by Disulfide Tethering

The BCL-2 family is composed of anti- and pro-apoptotic members that respectively protect or disrupt mitochondrial integrity. Anti-apoptotic overexpression can promote oncogenesis by trapping the BCL-2 homology 3 (BH3) “killer domains” of pro-apoptotic proteins in a surface groove, blocking apoptosis. Groove inhibitors, such as the relatively large BCL-2 drug venetoclax (868 Da), have emerged as cancer therapies. BFL-1 remains an undrugged oncogenic protein and can cause venetoclax resistance. Having identified a unique C55 residue in the BFL-1 groove, we performed a disulfide tethering screen to determine if C55 reactivity could enable smaller molecules to block BFL-1's BH3-binding functionality. We found that a disulfide-bearing N-acetyltryptophan analog (304 Da adduct) effectively targeted BFL-1 C55 and reversed BFL-1-mediated suppression of mitochondrial apoptosis. Structural analyses implicated the conserved leucine-binding pocket of BFL-1 as the interaction site, resulting in conformational remodeling. Thus, therapeutic targeting of BFL-1 may be achievable through the design of small, cysteine-reactive drugs.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2023

New methods for trace analysis of gamma-irradiated pentaerythritol tetranitrate

High explosives (HEs) are used in a diverse range of applications in which they could be exposed to various radiation levels that may cause potential chemical changes. This study further evaluated pentaerythritol tetranitrate (PETN) that was previously aged with a low-level 2 kGy dose of gamma irradiation in order to understand chemical changes caused by irradiation. Both unirradiated PETN and gamma-irradiated PETN were analyzed using ultra high-pressure liquid chromatography coupled to quadrupole time of flight mass spectrometry (UHPLC-QTOF). The resulting data were processed in a non-targeted manner using Fisher's ratio analysis and multivariate curve resolution-alternating least squares (MCR-ALS) to aid in discovery and identification of the chemical changes brought about by irradiation without a priori knowledge. The application of using UHPLC-QTOF in combination with chemometric techniques for the analysis of irradiated samples has not previously been performed. Here, in this work, we show how to use this method to provide chemical information that would otherwise not be discernible, such as the discovery of degradation of the various homologues of PETN. Major differences identified with radiolytic aging of the PETN sample included decomposition products that resulted from the degradation of the trigger linkage – the O–NO 2 bonds – resulting in the formation of alcohol and aldehyde groups. Similar degradation was also observed in the PETN homologues as well as interconversion from one homologue to another.

38 RADIATION CHEMISTRY, RADIOCHEMISTRY, AND NUCLEA↗