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NASA NTRS2015

A High Performance Computing Approach to Tree Cover Delineation in 1-m NAIP Imagery Using a Probabilistic Learning Framework

Tree cover delineation is a useful instrument in deriving Above Ground Biomass (AGB) density estimates from Very High Resolution (VHR) airborne imagery data. Numerous algorithms have been designed to address this problem, but most of them do not scale to these datasets, which are of the order of terabytes. In this paper, we present a semi-automated probabilistic framework for the segmentation and classification of 1-m National Agriculture Imagery Program (NAIP) for tree-cover delineation for the whole of Continental United States, using a High Performance Computing Architecture. Classification is performed using a multi-layer Feedforward Backpropagation Neural Network and segmentation is performed using a Statistical Region Merging algorithm. The results from the classification and segmentation algorithms are then consolidated into a structured prediction framework using a discriminative undirected probabilistic graphical model based on Conditional Random Field, which helps in capturing the higher order contextual dependencies between neighboring pixels. Once the final probability maps are generated, the framework is updated and re-trained by relabeling misclassified image patches. This leads to a significant improvement in the true positive rates and reduction in false positive rates. The tree cover maps were generated for the whole state of California, spanning a total of 11,095 NAIP tiles covering a total geographical area of 163,696 sq. miles. The framework produced true positive rates of around 88% for fragmented forests and 74% for urban tree cover areas, with false positive rates lower than 2% for both landscapes. Comparative studies with the National Land Cover Data (NLCD) algorithm and the LiDAR canopy height model (CHM) showed the effectiveness of our framework for generating accurate high-resolution tree-cover maps.

Segments↗
NASA NTRS1994

Plant Responses to Increased UV-B Radiation: A Research Project

Ozone decrease implies more ultraviolet-B (UV-B) radiation reaching the surface of the Earth. Increased UV-B radiation triggers responses by living organisms. Despite the large potential impacts on vegetation, little is known about UV-B effects on terrestrial ecosystems. Long-term ecological studies are needed to quantify the effects of increased UV radiation on terrestrial ecosystems, asses the risks, and produce reliable data for prediction. Screening pigments are part of one of the protective mechanism in plants. Higher concentrations of screening pigments in leaves may be interpreted as a response to increased UV radiation. If the screening effect is not sufficient, important molecules will be disturbed by incoming radiation. Thus, genetics, photosynthesis, growth, plant and leaf shape and size, and pollen grains may be affected. This will have an impact on ecosystem dynamics, structure and productivity. It is necessary to monitor selected terrestrial ecosystems to permit detection and interpretation of changes attributable to global climate change and depleted ozone shield. The objectives of this project are: (1) To identify and measure indicators of the effects of increased solar UV-B radiation on terrestrial plants; (2) to select indicators with the greatest responses to UV-B exposure; (3) to test, adapt or create ecosystem models that use the information gathered by this project for prediction and to enhance our understanding of the effects of increased UV-B radiation on terrestrial ecosystems. As a first step to achieve these objectives we propose a three-year study of forest and steppe vegetation on the North slope of the Brooks Range (within the Arctic circle, in Alaska), in the Saguaro National Monument (near Tucson, Arizona) and in the forests and steppes of Patagonia (Argentina). We selected (1) vegetation north of the Polar Circle because at 70N there is 8% risk of plant damage due to increased UV-B radiation; (2) the foothills of Catalina Mountains because there is anecdotal evidence of plant damage on the saguaros that has been linked to increased UV radiation, and (3) the forests of Nothofagus spp. and the steppe of Patagonia where the risk of plant damage at 35S is 5% and increases to as much as 15% at 55S due to increased UV-B radiation. Measurements of UV-B radiation impinging on the surface at 55S largely exceed the predicted UV-B radiation values at 50 latitude and 0% ozone depletion. Preliminary HPLC analyses of UV-B absorbing compounds in Nothofagus antartica, N. pumilio, N. betuloides and Rumex sp. in natural conditions show species-specific patterns. The spectrum of N. antartica grown at 38S differs significantly from that of N. antartica in natural conditions in Ushuaia (55S). These results suggest that the selected main area (Patagonia) is appropriate for assessing the problem and its magnitude and that Nothofagus is appropriate for our study.

DAntoni, H. L.↗
NASA NTRS2004

Clouds Versus Carbon: Predicting Vegetation Roughness by Maximizing Productivity

Surface roughness is one of the dominant vegetation properties that affects land surface exchange of energy, water, carbon, and momentum with the overlying atmosphere. We hypothesize that the canopy structure of terrestrial vegetation adapts optimally to climate by maximizing productivity, leading to an optimum surface roughness. An optimum should exist because increasing values of surface roughness cause increased surface exchange, leading to increased supply of carbon dioxide for photosynthesis. At the same time, increased roughness enhances evapotranspiration and cloud cover, thereby reducing the supply of photosynthetically active radiation. We demonstrate the optimum through sensitivity simulations using a coupled dynamic vegetation-climate model for present day conditions, in which we vary the value of surface roughness for vegetated surfaces. We find that the maximum in productivity occurs at a roughness length of 2 meters, a value commonly used to describe the roughness of today's forested surfaces. The sensitivity simulations also illustrate the strong climatic impacts of vegetation roughness on the energy and water balances over land: with increasing vegetation roughness, solar radiation is reduced by up to 20 W/sq m in the global land mean, causing shifts in the energy partitioning and leading to general cooling of the surface by 1.5 K. We conclude that the roughness of vegetated surfaces can be understood as a reflection of optimum adaptation, and it is associated with substantial changes in the surface energy and water balances over land. The role of the cloud feedback in shaping the optimum underlines the importance of an integrated perspective that views vegetation and its adaptive nature as an integrated component of the Earth system.

Olsen, Lola M.↗
NASA NTRS1999

Thermal Remote Sensing: A Powerful Tool in the Characterization of Landscapes on a Functional Basis

Thermal remote sensing instruments can function as environmental measuring tools, with capabilities leading toward new directions in functional landscape ecology. Theoretical deduction and phenomenological observation leads us to believe that the second law of thermodynamics requires that all dynamically systems develop in a manner which dissipates gradients as rapidly as possible within the constraints of the system at hand. The ramification of this requirement is that dynamical systems will evolve dissipative structures which grow and complexify over time. This perspective has allowed us to develop a framework for discussing ecosystem development and integrity. In the context of this framework we have developed measures of development and integrity for ecosystems. One set of these measures is based on destruction of the exergy content of incoming solar energy. More developed ecosystems will be more effective at dissipating the solar gradient (destroying its exergy content). This can be measured by the effective surface temperature of the ecosystem on a landscape scale. These surface temperatures are measured using airborne thermal scanners such as the Thermal Infrared Multispectral Scanner (TIMS) and the Airborne Thermal/Visible Land Application Sensor(ATLAS) sensors. An analysis of agriculture and forest ecosystems will be used to illustrate the concept of ecological thermodynamics and the development of ecosystems.

Jeffrey, Luvall C.↗
NASA NTRSDate not supplied

An Observation-Driven Framework for Modeling Post-Fire Hydrologic Response: Evaluation for Two Central California Case Studies

In a warming climate, wildfires are becoming increasingly common, especially in semi-arid environments. Wildfires can disrupt forest ecosystems and induce changes to the land surface. Collectively, these impacts can alter the hydrologic response of a catchment following a fire, resulting in increased potential for surface runoff, reduced evapotranspiration, and, ultimately, a higher risk for flash flooding and mass wasting. The timescale for post-fire recovery of hydrological processes to return to pre-fire conditions is not well established due to the lack of ground measurements. Accurate characterization of fire impacts on hydrologic response is also challenging to simulate, given the complex interplay of various processes. Here, we present a generalized framework to quantify wildfire impacts on runoff generation. We consider the vegetation and soil disturbances as the primary contributors to post-fire floods. Using an ensemble modeling structure to account for parameter uncertainty and consider model sensitivity, remotely sensed leaf area index (LAI) is assimilated into a land surface model (LSM) to simulate vegetation disturbance, and the maximum land surface saturation LSM parameter is decreased to parameterize the soil disturbance following observed fires. We evaluated the impacts of fire-induced changes to LAI and soil saturation on hydrologic states like runoff and evapotranspiration. Analysis of two events in central California shows that 1) the LAI assimilation has a greater impact on water balance; and 2) the soil scheme captures a range of outcomes, with substantial impacts on surface runoff for some ensemble members, which could affect flood potential.

Timothy M Lahmers↗
NASA NTRS2009

Cambium

The Cambium investigation is one in a pair of investigations which utilizes the Advanced Biological Research System (ABRS). Cambium seeks definitive evidence that gravity has a direct effect on cambial cells (cells located under the inner bark where secondary growth occurs) in willow, Salix babylonica. The Cambium investigation uses willow plants flown on the International Space Station to better understand the fundamental processes by which plants produce cellulose and lignin, the two main structural materials found in plant matter. On Earth, the nature of wood within tree stems varies depending on position, and that within-tree variation includes differences in cell types and chemistry including lignin and cellulose, two major components of wood influencing wood strength, usefulness and carbon content. Reaction wood is an extreme example of such variation, and it is believed that reaction wood develops as a reaction to the influence of gravity. For the Cambium experiment, young willow plants will be launched to the ISS where their stems will be looped in an attempt to induce reaction wood formation. After on-orbit growth, the plants will be preserved and returned to Earth for analysis. Understanding the role of gravity in wood formation is expected to enable wiser management of forests for carbon sequestration as well as better utilization of trees for wood products. Detailed Research Description: The Cambium experiment will provide an understanding of physiological processes such as gene expression, metabolism and general plant development that are affected in plant systems exposed to space flight. Cambium seeks definitive evidence that gravity has a direct effect on the cambial cells (cells located under the inner bark where secondary growth occurs) that contribute to xylogenesis (reaction wood formation) in willow plants, Salix babylonica. Tension wood fibers differentiate on the upper sides of stems when the stem is altered from its normal (vertical) growth position by looping. This reaction wood response does not occur if the orientation of the plant stem with respect to gravity is not altered. If a localized zone of tension wood should be formed in looped stems under microgravity conditions, this would be the first conclusive evidence that gravity is not required. On the other hand, if a zone of tension wood is not produced in looped stems (subjected to tension on one side, compression on the other) in microgravity, this would be the first definitive evidence that gravity has a direct effect on the cambial cells which contribute to reaction wood formation. Following return to Earth the plants will be analyzed by microscopy and chemical methods.

Savidge, Rodney↗
NASA NTRS2025

An Observation-Driven Framework for Modeling Post-Fire Hydrologic Response: Evaluation for Two Central California Case Studies

In a warming climate, wildfires are becoming increasingly common, especially in semi-arid environments. Wildfires can disrupt forest ecosystems and induce changes to the land surface. Collectively, these impacts can alter the hydrologic response of a catchment following a fire, resulting in increased potential for surface runoff, reduced evapotranspiration, and, ultimately, a higher risk for flash flooding and mass wasting. The timescale of post-fire recovery of hydrological processes to return to pre-fire conditions is not well established due to the lack of ground measurements. Accurate characterization of the impacts of fire on hydrologic response is also challenging to simulate, given the complex interplay of various processes. Here, we present a generalized framework to quantify the impacts of wildfire on runoff generation. We consider the disturbances in the vegetation and soil as the two main factors contributing to post-fire floods. Using an ensemble modeling structure to account for parameter uncertainty, remotely sensed leaf area index (LAI) is assimilated into a land surface model (LSM) to simulate vegetation disturbance, and the maximum land surface saturation LSM parameter is decreased to parameterize the soil disturbance following observed fires. We consider the impacts of fire-induced changes to LAI and soil saturation on hydrologic states like runoff and evapotranspiration for two case studies. These case studies demonstrate the general applicability of hydrophobicity formulation to serve as a guideline for exploring the range of hydrologic responses post-fire.

Fire Hydrology↗
NASA NTRS1973

Satellite geological and geophysical remote sensing of Iceland: Preliminary results of geologic, hydrologic, oceanographic, and agricultural studies with ERTS-1 imagery

The author has identified the following significant results. The wide variety of geological and geophysical phenomena which can be observed in Iceland, and particularly their very direct relation to the management of the country's natural resources, has provided great impetus to the use of ERTS-1 imagery to measure and map the dynamic natural phenomena in Iceland. MSS imagery is being used to study a large variety of geological and geophysical eruptive products, geologic structure, volcanic geomorphology, hydrologic, oceanographic, and agricultural phenomena of Iceland. Some of the preliminary results from this research projects are: (1) a large number of geological and volcanic features can be studied from ERTS-1 imagery, particularly imagery acquired at low sun angle, which had not previously been recognized; (2) under optimum conditions the ERTS-1 satellite can discern geothermal areas by their snow melt pattern or warm spring discharge into frozen lakes; (3) various maps at scales of 1:1 million and 1:500,000 can be updated and made more accurate with ERTS-1 imagery; (4) the correlation of water reserves with snowcover can improve the basis for planning electrical production in the management of water resources; (5) false-color composites (MSS) permitted the mapping of four types of vegetation: forested; grasslands, reclaimed, and cultivated areas, and the seasonal change of the vegetation, all of high value to rangeland management.

Williams, R. S., Jr.↗
NASA NTRS1995

Impact of the ongoing Amazonian deforestation on local precipitation: A GCM simulation study

Numerical simulation experiments were conducted to delineate the influence of in situ deforestation data on episodic rainfall by comparing two ensembles of five 5-day integrations performed with a recent version of the Goddard Laboratory for Atmospheres General Circulation Model (GCM) that has a simple biosphere model (SiB). The first set, called control cases, used the standard SiB vegetation cover (comprising 12 biomes) and assumed a fully forested Amazonia, while the second set, called deforestation cases, distinguished the partially deforested regions of Amazonia as savanna. Except for this difference, all other initial and prescribed boundary conditions were kept identical in both sets of integrations. The differential analyses of these five cases show the following local effects of deforestation. (1) A discernible decrease in evapotranspiration of about 0.80 mm/d (roughly 18%) that is quite robust in the averages for 1-, 2-, and 5-day forecasts. (2) A decrease in precipitation of about 1.18 mm/d (roughly 8%) that begins to emerge even in 1-2 day averages and exhibits complex evolution that extends downstream with the winds. (3) A significant decrease in the surface drag force (as a consequence of reduced surface roughness of deforested regions) that, in turn, affects the dynamical structure of moisture convergence and circulation. The surface winds increase significantly during the first day, and thereafter the increase is well maintained even in the 2- and 5-day averages.

Walker, G. K.↗
NASA NTRS2003

First Year Wilkinson Microwave Anisotropy Probe (WMAP)Observations: Preliminary Maps and Basic Results

We present full sky microwave maps in five frequency bands (23 to 94 GHz) from the WMAP first year sky survey. Calibration errors are less than 0.5% and the low systematic error level is well specified. The cosmic microwave background (CMB) is separated from the foregrounds using multifrequency data. The sky maps are consistent with the 7 in. full-width at half-maximum (FWHM) Cosmic Background Explorer (COBE) maps. We report more precise, but consistent, dipole and quadrupole values. The CMB anisotropy obeys Gaussian statistics with -58 less than f(sub NL) less than 134 (95% CL). The 2 less than or = l less than or = 900 anisotropy power spectrum is cosmic variance limited for l less than 354 with a signal-to-noise ratio greater than 1 per mode to l = 658. The temperature-polarization cross-power spectrum reveals both acoustic features and a large angle correlation from reionization. The optical depth of reionization is tau = 0.17 +/- 0.04, which implies a reionization epoch of t(sub r) = 180(sup +220, sub -80) Myr (95% CL) after the Big Bang at a redshift of z(sub r) = 20(sup +10, sub -9) (95% CL) for a range of ionization scenarios. This early reionization is incompatible with the presence of a significant warm dark matter density. A best-fit cosmological model to the CMB and other measures of large scale structure works remarkably well with only a few parameters. The age of the best-fit universe is t(sub 0) = 13.7 +/- 0.2 Gyr old. Decoupling was t(sub dec) = 379(sup +8, sub -7)kyr after the Big Bang at a redshift of z(sub dec) = 1089 +/- 1. The thickness of the decoupling surface was Delta(sub z(sub dec)) = 195 +/- 2. The matter density of the universe is Omega(sub m)h(sup 2) = 0.135(sup +0.008, sub -0.009) the baryon density is Omega(sub b)h(sup 2) = 0.0224 +/- 0.0009, and the total mass-energy of the universe is Omega(sub tot) = 1.02 +/- 0.02. There is progressively less fluctuation power on smaller scales, from WMAP to fine scale CMB measurements to galaxies and finally to the Ly-alpha forest. This is accounted for with a running spectral index, significant at the approx. 2(sigma) level. The spectral index of scalar fluctuations is fit as n(sub s) = 0.93 +/-0.03 at wavenumber k(sub o) = 0.05/Mpc ((sub eff) approx. = 700), with a slope of dn(sub s)/d I(sub nk) = -0.031(sup + 0.016, sub -0.018) in the best-fit model.

Bennett, C. L.↗
NASA NTRS2008

Deformation and Failure of a Multi-Wall Carbon Nanotube Yarn Composite

Forests of multi-walled carbon nanotubes can be twisted and manipulated into continuous fibers or yarns that exhibit many of the characteristics of traditional textiles. Macro-scale analysis and test may provide strength and stiffness predictions for a composite composed of a polymer matrix and low-volume fraction yarns. However, due to the nano-scale of the carbon nanotubes, it is desirable to use atomistic calculations to consider tube-tube interactions and the influence of simulated twist on the effective friction coefficient. This paper reports laboratory test data on the mechanical response of a multi-walled, carbon nanotube yarn/polymer composite from both dynamic and quasi-static tensile tests. Macroscale and nano-scale analysis methods are explored and used to define some of the key structure-property relationships. The measured influence of hot-wet aging on the tensile properties is also reported.

Gates, Thomas S.↗
NASA NTRS2003

Wildfires Dynamics in Mid-Siberian Larch Dominated Communities

The longterm wildfire dynamics, including fire return interval (FRI), in Siberian larch communities were examined. A wildfire chronology encompassing the 15th through the 20th centuries was developed from analyzing tree stem fire scars. Two methods were used to calculate the time interval between fires: 1) direct counting of annual tree growth rings between stem fire scars and 2) the next earlier fire date was estimated from growth ring analysis and added to the first estimate. Average FRI determined from stem fire scar dating was 82 plus or minus 7 using Method I or 95 plus or minus 7 when age of the next earlier fire was inferred from observed larch regeneration structure (Method II). FRI was also found to be dependent on site topography. FRI on north-east facing slopes was 86 plus or minus 11 years (105 plus or minus 12). FRI on south-west facing slopes was significantly less at 61 plus or minus 8 (73 plus ot minus 8) years. Flat terrain showed little difference between methods 68 plus or minus 14 (70 plus or minus 13). This was also the case for bogs, but FRI was much longer; 139 plus or minus 17 (138 plus ot minus 18). The maximum number of annual fires occurred with periods of 36 and 82 years on average. The temporal trend in the FRI decreased from 101 years in the 19 th century to 65 years in the 20th century. The effect of post-fire forest recovery on depth to permafrost was also estimated. After initial melting from increased local temperatures permafrost depth decreased at a rate of 0.3 cm/yr on average as forest canopies developed.

Kharuk, V. I.↗
NASA NTRS1987

Pumping potential wells

Nonmonotonic plasma potential structures are a common feature of many double layers and sheaths. Steady state plasma potential wells separating regions having different plasma potentials are often found in laboratory experiments. In order to exist, such structures all must find a solution to a common problem. Ions created by charge exchange or ionization in the region of the potential well are electrostatically confined and tend to accumulate and fill up the potential well. The increase in positive charge should eliminate the well. Nevertheless, steady state structures are found in which the wells do not fill up. This means that it is important to take into account processes which 'pump' ions from the well. As examples of ion pumping of plasma wells, potential dips in front of a positively biased electro collecting anode in a relatively cold, low density multidipole plasma is considered. Pumping is provided by ion leaks from the edges of the potential dip or by oscillating the applied potential. In the former case the two dimensional character of the problem is shown to be important.

Hershkowitz, N.↗
NASA NTRS1987

Pumping potential wells

Nonmonotonic plasma potential structures are a common feature of many double layers and sheaths. Steady state plasma potential wells separating regions having different plasma potentials are often found in laboratory experiments. In order to exist, all such structures must find a solution to a common problem. Ions created by charge exchange or ionization in the region of the potential well are electrostatically confined and tend to accumulate and fill up the potential well. The increase in positive charge should eliminate the well. Nevertheless, steady state structures are found in which the wells do not fill up. This means that it is important to take into account processes which pump ions from the well. As examples of ion pumping of plasma wells, potential dips in front of a positively biased electron collecting anode in a relatively cold, low density, multidipole plasma are considered. Pumping is provided by ion leaks from the edges of the potential dip or by oscillating the applied potential. In the former case the two-dimensional character of the problem is shown to be important.

Hershkowitz, N.↗
NASA NTRS2019

Alternative Vegetation States in Tropical Forests and Savannas: The Search for Consistent Signals in Diverse Remote Sensing Data

Globally, the spatial distribution of vegetation is governed primarily by climatological factors (rainfall and temperature, seasonality, and inter-annual variability). The local distribution of vegetation, however, depends on local edaphic conditions (soils and topography) and disturbances (fire, herbivory, and anthropogenic activities). Abrupt spatial or temporal changes in vegetation distribution can occur if there are positive (i.e., amplifying) feedbacks favoring certain vegetation states under otherwise similar climatic and edaphic conditions. Previous studies in the tropical savannas of Africa and other continents using the MODerate Resolution Imaging Spectroradiometer (MODIS) vegetation continuous fields (VCF) satellite data product have focused on discontinuities in the distribution of tree cover at different rainfall levels, with bimodal distributions (e.g., concentrations of high and low tree cover) interpreted as alternative vegetation states. Such observed bimodalities over large spatial extents may not be evidence for alternate states, as they may include regions that have different edaphic conditions and disturbance histories. In this study, we conduct a systematic multi-scale analysis of diverse MODIS data streams to quantify the presence and spatial consistency of alternative vegetation states in Sub-Saharan Africa. The analysis is based on the premise that major discontinuities in vegetation structure should also manifest as consistent spatial patterns in a range of remote sensing data streams, including, for example, albedo and land surface temperature (LST). Our results confirm previous observations of bimodal and multimodal distributions of estimated tree cover in the MODIS VCF. However, strong disagreements in the location of multimodality between VCF and other data streams were observed at 1 km scale. Results suggest that the observed distribution of VCF over vast spatial extents are multimodal, not because of local-scale feedbacks and emergent bifurcations (the definition of alternative states), but likely because of other factors including regional scale differences in woody dynamics associated with edaphic, disturbance, and/or anthropogenic processes. These results suggest the need for more in-depth consideration of bifurcation mechanisms and thus the likely spatial and temporal scales at which alternative states driven by different positive feedback processes should manifest.

Savanna↗
NASA NTRS2004

Recent History of Large-Scale Ecosystem Disturbances in North America Derived from the AVHRR Satellite Record

Ecosystem structure and function are strongly impacted by disturbance events, many of which in North America are associated with seasonal temperature extremes, wildfires, and tropical storms. This study was conducted to evaluate patterns in a 19-year record of global satellite observations of vegetation phenology from the Advanced Very High Resolution Radiometer (AVHRR) as a means to characterize major ecosystem disturbance events and regimes. The fraction absorbed of photosynthetically active radiation (FPAR) by vegetation canopies worldwide has been computed at a monthly time interval from 1982 to 2000 and gridded at a spatial resolution of 8-km globally. Potential disturbance events were identified in the FPAR time series by locating anomalously low values (FPAR-LO) that lasted longer than 12 consecutive months at any 8-km pixel. We can find verifiable evidence of numerous disturbance types across North America, including major regional patterns of cold and heat waves, forest fires, tropical storms, and large-scale forest logging. Summed over 19 years, areas potentially influenced by major ecosystem disturbances (one FPAR-LO event over the period 1982-2000) total to more than 766,000 km2. The periods of highest detection frequency were 1987-1989, 1995-1997, and 1999. Sub- continental regions of Alaska and Central Canada had the highest proportion (greater than 90%) of FPAR-LO pixels detected in forests, tundra shrublands, and wetland areas. The Great Lakes region showed the highest proportion (39%) of FPAR-LO pixels detected in cropland areas, whereas the western United States showed the highest proportion (16%) of FPAR-LO pixels detected in grassland areas. Based on this analysis, an historical picture is emerging of periodic droughts and heat waves, possibly coupled with herbivorous insect outbreaks, as among the most important causes of ecosystem disturbance in North America.

Potter, Christopher↗
NASA NTRSDate not supplied

Remote Sensing of Lineage Functional Types for Modeling and Monitoring Biodiversity

Hyperspectral remote sensing has the potential to continuously scale plant function and plant diversity information from landscape to global extents. Numerous studies have indicated that VSWIR (400-2500 nm) reflectance properties of vegetation capture evolutionarily conserved biochemical, structural, and other functional attributes of plant species. Spectral properties conserved in plants provide the opportunity to both 1) aggregate species into lineages with improved classification accuracy and 2) link those lineages directly to plant traits. Full realization of this goal will enable parameterization of Land Surface Models (LSMs) with remotely sensed information, e.g., canopy nitrogen, and better representations of biodiversity and functional diversity in biogeographic studies. In this study, we use hyperspectral AVIRIS data from the 2013 HyspIRI campaign over the Southern Sierra Nevada, California flight box to investigate the potential for incorporating evolutionary thinking into landcover classification. We link the airborne hyperspectral data with vegetation plot data from roughly 1372 surveys and a phylogeny representing 1361 species. We aggregate species into lineages ranging from species level groups down to similar number of Plant Functional Types as often used in LSMs. We assessed the ability of Random Forest and Partial Least Squares Discriminant Analysis to discriminate across these different phylogenetic scales and determine the optimal number of lineages to classify. Although there are some temporal and spatial differences in our training data, our best approaches achieved moderate classification accuracy (Kappa > 0.65). Given an optimal number of lineages, we explored approaches to improve classifications including machine learning and unmixing approaches. This work suggests that lineage-based methods may be a promising way to leverage the huge amounts of data that will come from high resolution and high return interval hyperspectral data planned for the Surface Biology and Geology mission with sparsely sampled existing ground-based ecological data.

Hyperspectral↗
NASA NTRS1994

SIGMA: A Knowledge-Based Simulation Tool Applied to Ecosystem Modeling

The need for better technology to facilitate building, sharing and reusing models is generally recognized within the ecosystem modeling community. The Scientists' Intelligent Graphical Modelling Assistant (SIGMA) creates an environment for model building, sharing and reuse which provides an alternative to more conventional approaches which too often yield poorly documented, awkwardly structured model code. The SIGMA interface presents the user a list of model quantities which can be selected for computation. Equations to calculate the model quantities may be chosen from an existing library of ecosystem modeling equations, or built using a specialized equation editor. Inputs for dim equations may be supplied by data or by calculation from other equations. Each variable and equation is expressed using ecological terminology and scientific units, and is documented with explanatory descriptions and optional literature citations. Automatic scientific unit conversion is supported and only physically-consistent equations are accepted by the system. The system uses knowledge-based semantic conditions to decide which equations in its library make sense to apply in a given situation, and supplies these to the user for selection. "Me equations and variables are graphically represented as a flow diagram which provides a complete summary of the model. Forest-BGC, a stand-level model that simulates photosynthesis and evapo-transpiration for conifer canopies, was originally implemented in Fortran and subsequenty re-implemented using SIGMA. The SIGMA version reproduces daily results and also provides a knowledge base which greatly facilitates inspection, modification and extension of Forest-BGC.

Dungan, Jennifer L.↗