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At least 397 records · Page 22

Disease phenotype of classical sheep scrapie is changed upon experimental passage through white-tailed deer

Prion agents occur in strains that are encoded by the structure of the misfolded prion protein (PrP Sc ). Prion strains can influence disease phenotype and the potential for interspecies transmission. Little is known about the potential transmission of prions between sheep and deer. Previously, the classical US scrapie isolate (No.13-7) had a 100% attack rate in white-tailed deer after oronasal challenge. The purpose of this study was to test the susceptibility of sheep to challenge with the scrapie agent after passage through white-tailed deer (WTD scrapie). Lambs of various prion protein genotypes were oronasally challenged with WTD scrapie. Sheep were euthanized and necropsied upon development of clinical signs or at the end of the experiment (72 months post-inoculation). Enzyme immunoassay, western blot, and immunohistochemistry demonstrated PrP Sc in 4 of 10 sheep with the fastest incubation occurring in VRQ/VRQ sheep, which contrasts the original No.13-7 inoculum with a faster incubation in ARQ/ARQ sheep. Shorter incubation periods in VRQ/VRQ sheep than ARQ/ARQ sheep after passage through deer was suggestive of a phenotype change, so comparisons were made in ovinized mice and with sheep with known strains of classical sheep scrapie: No. 13–7 and x-124 (that has a more rapid incubation in VRQ/VRQ sheep). After mouse bioassay, the WTD scrapie and x-124 isolates have similar incubation periods and PrP Sc conformational stability that are markedly different than the original No. 13–7 inoculum. Furthermore, brain tissues of sheep with WTD scrapie and x-124 scrapie have similar patterns of immunoreactivity that are distinct from sheep with No. 13–7 scrapie. Multiple lines of evidence suggest a phenotype switch when No. 13–7 scrapie prions are passaged through deer. This represents one example of interspecies transmission of prions resulting in the emergence or selection of new strain properties that could confound disease eradication and control efforts.

59 BASIC BIOLOGICAL SCIENCES↗

Diagnostic Comparison between Lithium-rich Layered Oxides and Classical Layered Oxides

Established combined characterization techniques to study oxygen activities. Confirmed oxygen anion redox reversibly contributing to the overall capacity of Li-rich layered oxides. Identified the structure irreversible transformation and large amount of strain formation induced by oxygen vacancies formation. Applied GSIR modification method to precisely control oxygen activity in Li-rich layered oxides. Identified several possible contributing factors to irreversible capacity loss routinely seen on the first cycle of classical layered oxides: phase transformation in bulk classical diffusion limitations irreversible surface side reactions generation of dislocations or other extended defects loss of electrical connectivity among cathode particles

Meng, Ying Shirley↗

Porting Classical Approaches for Quantum Simulations to Quantum Computers

Simulating quantum many-body systems is one of the most promising problems in which we might anticipate that quantum computers should show quantum advantage. Unfortunately, there is still a gap between this promise and actual practice. New quantum algorithms need to be developed and the current quantum algorithms have various difficulties - e.g efficient state preparation - which must be overcome and improved upon. In many cases, classical approaches need to be ported over to quantum devices. In this project we have developed a suite of new quantum algorithms which makes progress in this regard. We developed a new optimization scheme for variational quantum eigensolvers, UBOS, which mitigates problems with local minimas and barren plateaus while improving convergence to the ground state by an order of magnitude. We developed a new way to utilize qubitization to find ground states of nearly frustration-free Hamiltonians faster than all previous methods. We developed a series of state preparation techniques which helps initialize parameterized quantum circuits into reasonable starting points on which quantum algorithms are then applied. In addition to the development of novel algorithms, it is critical to have classical simulation techniques for approximately simulating quantum circuits which can be used to benchmark and understand quantum algorithms. Toward that end, we developed a novel POVM formalism to simulate quantum circuits as well as exemplify the massive parallelization of tensor network methodologies. Finally, we developed physical understanding of entanglement phase transitions such as many-body localization and random tensor networks.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

Temporal Coarse Graining for Classical Stochastic Noise in Quantum Systems

Simulations of quantum systems with Hamiltonian classical stochastic noise can be challenging when the noise exhibits temporal correlations over a multitude of time scales, such as for 1/f noise in solid-state quantum information processors. Here we present an approach for simulating Hamiltonian classical stochastic noise that performs temporal coarse-graining by effectively integrating out the high-frequency components of the noise. We focus on the case where the stochastic noise can be expressed as a sum of Ornstein-Uhlenbeck processes. Temporal coarse-graining is then achieved by conditioning the stochastic process on a coarse realization of the noise, expressing the conditioned stochastic process in terms of a sum of smooth, deterministic functions and bridge processes with boundaries fixed at zero, and performing the ensemble average over the bridge processes. For Ornstein-Uhlenbeck processes, the deterministic components capture all dependence on the coarse realization, and the stochastic bridge processes are not only independent but taken from the same distribution with correlators that can be expressed analytically, allowing the associated noise propagators to be precomputed once for all simulations. This combination of noise trajectories on a coarse time grid and ensemble averaging over bridge processes has practical advantages, such as a simple concatenation rule, that we highlight with numerical examples.

Albash, Tameem [Sandia National Lab. (SNL-NM), Alb↗

A Comparison between Invariant and Equivariant Classical and Quantum Graph Neural Networks

Machine learning algorithms are heavily relied on to understand the vast amounts of data from high-energy particle collisions at the CERN Large Hadron Collider (LHC). The data from such collision events can naturally be represented with graph structures. Therefore, deep geometric methods, such as graph neural networks (GNNs), have been leveraged for various data analysis tasks in high-energy physics. One typical task is jet tagging, where jets are viewed as point clouds with distinct features and edge connections between their constituent particles. The increasing size and complexity of the LHC particle datasets, as well as the computational models used for their analysis, have greatly motivated the development of alternative fast and efficient computational paradigms such as quantum computation. In addition, to enhance the validity and robustness of deep networks, we can leverage the fundamental symmetries present in the data through the use of invariant inputs and equivariant layers. In this paper, we provide a fair and comprehensive comparison of classical graph neural networks (GNNs) and equivariant graph neural networks (EGNNs) and their quantum counterparts: quantum graph neural networks (QGNNs) and equivariant quantum graph neural networks (EQGNN). The four architectures were benchmarked on a binary classification task to classify the parton-level particle initiating the jet. Based on their area under the curve (AUC) scores, the quantum networks were found to outperform the classical networks. However, seeing the computational advantage of quantum networks in practice may have to wait for the further development of quantum technology and its associated application programming interfaces (APIs).

Forestano, Roy T. (ORCID:0000000203552076)↗

Hybrid Quantum-Classical Neural Network for Calculating Ground State Energies of Molecules

We present a hybrid quantum-classical neural network that can be trained to perform electronic structure calculation and generate potential energy curves of simple molecules. The method is based on the combination of parameterized quantum circuits and measurements. With unsupervised training, the neural network can generate electronic potential energy curves based on training at certain bond lengths. To demonstrate the power of the proposed new method, we present the results of using the quantum-classical hybrid neural network to calculate ground state potential energy curves of simple molecules such as H 2 , LiH, and BeH 2 . The results are very accurate and the approach could potentially be used to generate complex molecular potential energy surfaces.

74 ATOMIC AND MOLECULAR PHYSICS↗

Quantum Foundations of Classical Reversible Computing

The reversible computation paradigm aims to provide a new foundation for general classical digital computing that is capable of circumventing the thermodynamic limits to the energy efficiency of the conventional, non-reversible digital paradigm. However, to date, the essential rationale for, and analysis of, classical reversible computing (RC) has not yet been expressed in terms that leverage the modern formal methods of non-equilibrium quantum thermodynamics (NEQT). In this paper, we begin developing an NEQT-based foundation for the physics of reversible computing. We use the framework of Gorini-Kossakowski-Sudarshan-Lindblad dynamics (a.k.a. Lindbladians) with multiple asymptotic states, incorporating recent results from resource theory, full counting statistics and stochastic thermodynamics. Important conclusions include that, as expected: (1) Landauer’s Principle indeed sets a strict lower bound on entropy generation in traditional non-reversible architectures for deterministic computing machines when we account for the loss of correlations; and (2) implementations of the alternative reversible computation paradigm can potentially avoid such losses, and thereby circumvent the Landauer limit, potentially allowing the efficiency of future digital computing technologies to continue improving indefinitely. We also outline a research plan for identifying the fundamental minimum energy dissipation of reversible computing machines as a function of speed.

97 MATHEMATICS AND COMPUTING↗

Hybrid Quantum-Classical Eigensolver without Variation or Parametric Gates

The use of near-term quantum devices that lack quantum error correction, for addressing quantum chemistry and physics problems, requires hybrid quantum-classical algorithms and techniques. Here, we present a process for obtaining the eigenenergy spectrum of electronic quantum systems. This is achieved by projecting the Hamiltonian of a quantum system onto a limited effective Hilbert space specified by a set of computational bases. From this projection, an effective Hamiltonian is obtained. Furthermore, a process for preparing short depth quantum circuits to measure the corresponding diagonal and off-diagonal terms of the effective Hamiltonian is given, whereby quantum entanglement and ancilla qubits are used. The effective Hamiltonian is then diagonalized on a classical computer using numerical algorithms to obtain the eigenvalues. The use case of this approach is demonstrated for ground state and excited states of BeH2 and LiH molecules, and the density of states, which agrees well with exact solutions. Additionally, hardware demonstration is presented using IBM quantum devices for H2 molecule.

Jouzdani, Pejman (ORCID:0000000256470381)↗

The Curious Case of PDS 11: A Nearby, >10 Myr Old, Classical T Tauri Binary System

We present results of our study of the PDS 11 binary system, which belongs to a rare class of isolated, high Galactic latitude T Tauri stars. Our spectroscopic analysis reveals that PDS 11 is an M2–M2 binary system with both components showing similar H α emission strengths. Both the components appear to be accreting and are classical T Tauri stars. The lithium doublet Li i λ 6708, a signature of youth, is present in the spectrum of PDS 11A, but not in PDS 11B. From the application of lithium depletion boundary age-dating method and a comparison with the Li i λ 6708 equivalent width distribution of moving groups, we estimated an age of 10–15 Myr for PDS 11A. Comparison with pre-main sequence evolutionary models indicates that PDS 11A is a 0.4 M {sub ⊙} T Tauri star at a distance of 114–131 pc. PDS 11 system does not appear to be associated with any known star-forming regions or moving groups. PDS 11 is a new addition, after TWA 30 and LDS 5606, to the interesting class of old, dusty, wide binary classical T Tauri systems in which both components are actively accreting.

79 ASTRONOMY AND ASTROPHYSICS↗

On Presolar Stardust Grains from CO Classical Novae

About 30%–40% of classical novae produce dust 20–100 days after the outburst, but no presolar stardust grains from classical novae have been unambiguously identified yet. Although several studies claimed a nova paternity for certain grains, the measured and simulated isotopic ratios could only be reconciled, assuming that the grains condensed after the nova ejecta mixed with a much larger amount of close-to-solar matter. However, the source and mechanism of this potential post-explosion dilution of the ejecta remains a mystery. A major problem with previous studies is the small number of simulations performed and the implied poor exploration of the large nova parameter space. In this paper, we report the results of a different strategy, based on a Monte Carlo technique, that involves the random sampling over the most important nova model parameters: the white dwarf composition; the mixing of the outer white dwarf layers with the accreted material before the explosion; the peak temperature and density; the explosion timescales; and the possible dilution of the ejecta after the outburst. We discuss and take into account the systematic uncertainties for both the presolar grain measurements and the simulation results. Only those simulations that are consistent with all measured isotopic ratios of a given grain are accepted for further analysis. We also present the numerical results of the model parameters. Lastly, we identify 18 presolar grains with measured isotopic signatures consistent with a CO nova origin, without assuming any dilution of the ejecta. Among these, the grains G270_2, M11-334-2, G278, M11-347-4, M11-151-4, and Ag2_6 have the highest probability of a CO nova paternity.

nuclear reactions↗

Kinetic theory of turbulent compressible flows and comparison with classical theory

A complete set of turbulent correlations is given in terms of expansion coefficients in a double series of Hermite polynomials of a two-particle correlation in phase space. Only two of these coefficients, corresponding to Reynolds stress and turbulent heat flux, are shown to appear in gasdynamic equations of turbulence. This is accomplished by incorporating the phase-space correlation in the collision integral of Boltzmann's equation and by deriving generalized Navier-Stokes and Fourier transport relations. In contrast to the classical formalism, the simple expression remains invariant in form whether the flow is compressible or not. Nevertheless, a bilinear transformation of fluctuating quantities shows that the two formalisms are identical with regard to terms of double correlations. The kinetic theory justifies nonexistence of the higher-order correlations characteristic of compressible-turbulence equations in the classical regime.

Tsuge, S.↗

Extensions to the classical calculation of the effect of mutual shadowing in diffuse reflection

The classical method for accounting for the mutual shadowing among closely packed particles in multiple scattering calculations is extended in the following ways. (1) By modeling the particle distribution by a Poisson process with a varying density parameter, a 'Van der Waals' type approximation allows extension to a greater fractional volume density, D. In this case it is only required that D squared be much less than 1 instead of D being much less than 1. (2) In the case that the particle distribution is not uniform the classical calculation may be weighted by the pair correlation function of the distribution. (3) The use of the Markov chain formalism for radiative transfer allows inclusion of the effect of shadowing for two orders of scattering. For conditions such as might apply in Saturn's rings, the inclusion of this effect makes less than a 0.1% difference in the calculated phase curves, compared to previous calculations which have included shadowing only in the first scattering. The latter are thus shown to be quite accurate.

Esposito, L. W.↗

Classical and modern control design of a speed-hold system for a STOL airplane

A speed-hold system for an experimental short takeoff and landing jet airplane has been designed using both classical root-locus and modern optimal control synthesis techniques. The purpose of the speed-hold system is to maintain airspeed during final approach in the presence of wind shears, gusts, engine failures, and pilot control inputs. Designs were based on using airspeed as a single measurement and two symmetrically deployed upper surface blown flaps as a single control. An optimal control law feeding back all the states and the integral of airspeed through constant gains provided superior performance in terms of speed tracking and control surface activity. However, when a constant-gain Kalman filter was inserted to estimate the states using only the measurement of airspeed, the performance of the optimal control law was reduced to the same as that of a much simpler classical proportional-path plus integral-path control law. To improve the performance of the optimal control law, additional measurements would be required.

Blight, J. D.↗

Modeling the formation of ion clusters by applying classical nucleation theory

Experiments have been conducted to study the clustering of atmospheric trace gases around ion cores (Castleman and Tang, 1972; Searcy and Fenn, 1974; Castleman, 1978). The classical liquid-drop model is used to investigate this ion-induced formation mechanism. Results obtained from models of the distribution of Pb(+)-(H2O)n and H(+)-(H2O)n type clusters under various conditions are compared with experimental results. The distribution of water-ion clusters in the atmosphere as a function of altitude is calculated. In situ measurements of the water-ion cluster distributions in the upper atmosphere are then compared with present predictions. It is concluded that the classical nucleation theory can be used to predict rough estimates for ion cluster sizes under many conditions.

Yue, G. K.↗

Long-period classical Cepheids - Theory versus observation

New full amplitude models of classical Cepheids having periods longer than 13 days have been calculated, allowing the complete systematics of the observed light and velocity curves of classical Cepheids to be discussed in detail. Assuming that a normal evolutionary mass-luminosity relation is obeyed, the models reproduce such empirical phenomena as the full Hertzsprung progression of light and velocity curves and the gradual shift in phase of the Hertzsprung bump, together with the persistence in phase of the postmaximum shoulder on the light curve. Also reproduced are the retardation of maximum expansion velocity after maximum light, the correlation of light and velocity amplitudes, and the period-amplitude scatter diagram for both the light and the velocity amplitude. The average period predicted for a Cepheid light curve type is noted to be about 40 percent longer than that actually observed.

Carson, T. R.↗

Applications of classical and zero-total-pressure-loss sets of Euler equations to delta wings

Classical and zero-total pressure-loss sets of Euler equations were applied to sharp- and round-edge delta wings. The origin of the total pressure was explained in the classical set. For sharp-edged delta wings, all sets of Euler equations produce the same separated flow solutions. For round-edged delta wings and for coarse grids, the solution depends on the level of dissipation, the accuracy of the surface boundary condition, and the type of Euler equations set. For round-edged delta wings and for fine grids, attached flow solutions are obtained. Also presented were three dimensional flow solutions and asymmetric flow solutions including unsteady flow for sharp-edged delta wings. Euler equations should be restricted to sharp-edged wings for real flow solutions. For roung-edged wings, Navier-Stokes equations must be used.

Kandil, Osama A.↗

Classical novae detected in the IRAS survey

Of the four classical novae presently identified as having accurately known optical positions with counterparts in the IRAS Point Source Catalog, two correspond to events observed by IRAS within one year of their respective optical maxima; these are noted to be the first classical novae detected at IR wavelengths longer than 20 microns. The novae are Sgr 1982, Mus 1983, FH Ser (1970) and HR Del (1967), of which the latter two were also detected by IRAS. Mus 1983 is noted to have IR emission characteristics that are consistent with a free-free spectrum, as opposed to dust emission. The behavior of this and the Sgr 1982 nova is consistent with a previously suggested correlation between the inferred mass of heated dust and luminosity/speed class.

Dinerstein, Harriet L.↗