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At least 397 records · Page 22

Positive phase space distributions and uncertainty relations

In contrast to a widespread belief, Wigner's theorem allows the construction of true joint probabilities in phase space for distributions describing the object system as well as for distributions depending on the measurement apparatus. The fundamental role of Heisenberg's uncertainty relations in Schroedinger form (including correlations) is pointed out for these two possible interpretations of joint probability distributions. Hence, in order that a multivariate normal probability distribution in phase space may correspond to a Wigner distribution of a pure or a mixed state, it is necessary and sufficient that Heisenberg's uncertainty relation in Schroedinger form should be satisfied.

Kruger, Jan↗

Parallel beamlet dose calculation via beamlet contexts in a distributed multi‐GPU framework

Purpose Dose calculation is one of the most computationally intensive, yet essential tasks in the treatment planning process. With the recent interest in automatic beam orientation and arc trajectory optimization techniques, there is a great need for more efficient model‐based dose calculation algorithms that can accommodate hundreds to thousands of beam candidates at once. Foundational work has shown the translation of dose calculation algorithms to graphical processing units ( GPU s), lending to remarkable gains in processing efficiency. But these methods provide parallelization of dose for only a single beamlet, serializing the calculation of multiple beamlets and under‐utilizing the potential of modern GPU s. In this paper, the authors propose a framework enabling parallel computation of many beamlet doses using a novel beamlet context transformation and further embed this approach in a scalable network of multi‐ GPU computational nodes. Methods The proposed context‐based transformation separates beamlet‐local density and TERMA into distinct beamlet contexts that independently provide sufficient data for beamlet dose calculation. Beamlet contexts are arranged in a composite context array with dosimetric isolation, and the context array is subjected to a GPU collapsed‐cone convolution superposition procedure, producing the set of beamlet‐specific dose distributions in a single pass. Dose from each context is converted to a sparse representation for efficient storage and retrieval during treatment plan optimization. The context radius is a new parameter permitting flexibility between the speed and fidelity of the dose calculation process. A distributed manager‐worker architecture is constructed around the context‐based GPU dose calculation approach supporting an arbitrary number of worker nodes and resident GPU s. Phantom experiments were executed to verify the accuracy of the context‐based approach compared to Monte Carlo and a reference CPU ‐ CCCS implementation for single beamlets and broad beams composed by addition of beamlets. Dose for representative 4 π beam sets was calculated in lung and prostate cases to compare its efficiency with that of an existing beamlet‐sequential GPU ‐ CCCS implementation. Code profiling was also performed to evaluate the scalability of the framework across many networked GPU s. Results The dosimetric accuracy of the context‐based method displays <1.35% and 2.35% average error from the existing serialized CPU ‐ CCCS algorithm and Monte Carlo simulation for beamlet‐specific PDD s in water and slab phantoms, respectively. The context‐based method demonstrates substantial speedup of up to two orders of magnitude over the beamlet‐sequential GPU ‐ CCCS method in the tested configurations. The context‐based framework demonstrates near linear scaling in the number of distributed compute nodes and GPU s employed, indicating that it is flexible enough to meet the performance requirements of most users by simply increasing the hardware utilization. Conclusions The context‐based approach demonstrates a new expectation of performance for beamlet‐based dose calculation methods. This approach has been successful in accelerating the dose calculation process for very large‐scale treatment planning problems ‐ such as automatic 4 π IMRT beam orientation and VMAT arc trajectory selection, with hundreds of thousands of beamlets ‐ in clinically feasible timeframes. The flexibility of this framework makes it as a strong candidate for use in a variety of other very large‐scale treatment planning tasks and clinical workflows.

Neph, Ryan↗

A relational data-knowledge base system and its potential in developing a distributed data-knowledge system

A new approach used in constructing a rational data knowledge base system is described. The relational database is well suited for distribution due to its property of allowing data fragmentation and fragmentation transparency. An example is formulated of a simple relational data knowledge base which may be generalized for use in developing a relational distributed data knowledge base system. The efficiency and ease of application of such a data knowledge base management system is briefly discussed. Also discussed are the potentials of the developed model for sharing the data knowledge base as well as the possible areas of difficulty in implementing the relational data knowledge base management system.

Rahimian, Eric N.↗

Long-term Average Spectral and Spatial Distributions of Plasmaspheric Hiss Observed by the Akebono and IMAGE Satellites

The radiation belt slot region is known to result from losses of energetic electrons by enhanced pitch-angle scattering by whistler mode waves associated with plasmaspheric hiss emission. The distributions of whistler mode waves in the slot L range are therefore important for understanding the electron radiation belt. The sources and distributions of the waves are, however, still controversial. In the present study, using the Akebono/MCA data [1989-20051 and the IMAGE/RPI data [2000-20051, we have constructed the average plasmaspheric hiss spectral distributions over a broad frequency range. In addition, we have investigated the spatial distributions of plasmaspheric hiss with the wave map technique [Green et a1.(2005)]. Our study shows that the broadband plasmaspheric hiss are distributed in the frequency range of 100Hz to several kHz, and exhibit a broad intensive peak. The frequency of the intensity peak tends to increase with magnetic latitude. The frequencies of the most intense waves in the nominal slot L range (2<3) during quiet times (Dst>-50nT) are found to be between 300Hz and 600Hz on average. During high storm activity (Dst <-150nT), however, the peak frequencies become slightly lower. The intensity of plasmaspheric hiss clearly depends on substorm activity as measured by the AE index, consistent with Meredith et a1.(2004). The hiss wave intensity maps also show a strong local time asymmetry. The large amplitude waves are observed at 6:OO-19:OO MLT. From our extensive analysis, we have also found an L dependence of hiss activity, with the larger amplitude waves being observed at lower L during substorm active conditions. The same tendency can be found for solar activity. The average intensities of the waves during 1989-1991 and 2000-2001 are a few dB larger than those during 1992-1997 and 2005. The most intense waves are observed at lower L during high solar activity. The statistical study on spectrum features of the plasmaspheric hiss together with the spatial distribution show clear dependences of storm, substorm and solar activities.

Fung, Shing↗

Multiple dataset water-quality analyses in the vicinity of an ocean wastewater plume

The White's Point ocean outfall is the method of disposal for approximately 374 million gallons of treated wastewater per day from Los Angeles County. The photosynthetic characteristics and particle distributions have well-defined properties that can be exploited to yield information on transport of the plume, mixing dynamics, and resuspension of bottom sediments during periods of bottom current velocity in excess of ca. 0.1 m/s. This plume of particles serves as a conservative tracer, which was studied using a number of sampling platforms and strategies, including underway sawtooth, or 'tow-yo' sampling, moored arrays of instruments, stationary profiling, and now for the first time with remotely-sensed multispectral color imagery. Research in this area previously focused on examination of the plume as it relates to the local current field and transport of particles, and on the resuspension of bottom sediments during periods of increased currents. In addition, Wu et al elucidated techniques for separating the particle signal into photosynthetic and nonphotosynthetic components, based on the beam attenuation to chlorophyll fluorescence ratio. High-frequency time series measurements of the current field and bio-optical characteristics at a site close to the waste diffusers were also collected. These are being analyzed for the spectral characteristics of the longer-timescale variability, in order to predict particle transport through simple meteorological measurements. With the advent of high spectral and spatial resolution imaging spectrometers such as AVIRIS, it is now possible to construct causal relationships between particle distributions and signature of the upwelled radiance from the surface. The availability of a constant and well-characterized source of material lends itself well to models which predict upwelled radiance from the surface. The availability of a constant and well-characterized source of material lends itself well to models which predict upwelled light as a function of particle distributions, photosynthetic pigments, colored dissolved organic material, and detrital and degradation products of photosynthesis. In addition, the spatial coverage provided by the tow-yo sampling device, combined with the profile measurements of the light field, should facilitate the best inverse modeling attempts possible thus far.

Hamilton, Michael↗

Analysis of the multicomponent relativistic Boltzmann equation for electron scattering in big bang nucleosynthesis

Big-bang nucleosynthesis (BBN) is valuable as a means to constrain the physics of the early universe and it is the only probe of the radiation-dominated epoch. A fundamental assumption in BBN is that the nuclear velocity distributions obey Maxwell-Boltzmann (MB) statistics as they do in stars. Specifically, the BBN epoch is characterized by a dilute baryon plasma for which the velocity distribution of nuclei is mainly determined by the dominant Coulomb elastic scattering with mildly relativistic electrons. One must therefore deduce the momentum distribution for reacting nuclei from the multicomponent relativistic Boltzmann equation. However, the full multicomponent relativistic Boltzmann equation has only recently been analyzed and its solution has only been worked out in special cases. Moreover, a variety of schemes have been proposed that introduce nonthermal components into the BBN environment which can alter the thermal distribution of reacting nuclei. Here, we construct the relativistic Boltzmann equation in the context of BBN. We also derive a Langevin model and perform relativistic Monte-Carlo simulations which clarify the baryon distribution during BBN and can be used to analyze any relaxation from a nonthermal injection. Further, we show by these analyses that the thermalization process leads to a nuclear distribution function that remains very close to MB statistics even during the most relativistic environment relevant to BBN. Hence, the predictions of standard BBN remain unchanged.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

Models for the dynamics of dust-like matter in the self-gravity field: The method of hydrodynamic substitutions

Models for the dynamics of a dust-like medium in the self-gravity field are investigated. Solutions of the corresponding problems are constructed by the method of hydrodynamic substitutions generalizing the Cole–Hopf substitutions. The method is extended to multidimensional ideal and viscous fluid flows with cylindrical and spherical symmetries for which exact solutions are constructed. Solutions for the dynamics of self-gravitating dust with arbitrary initial distributions of both fluid density and velocity are constructed using special coordinate transformations. In particular, the problem of cosmological expansion is considered in terms of Newton’s gravity theory. Models of a one-dimensional viscous dust fluid flow and some problems of gas hydrodynamics are considered. Examples of exact solutions and their brief analysis are provided.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Effects of Ordering Strategies and Programming Paradigms on Sparse Matrix Computations

The Conjugate Gradient (CG) algorithm is perhaps the best-known iterative technique to solve sparse linear systems that are symmetric and positive definite. For systems that are ill-conditioned, it is often necessary to use a preconditioning technique. In this paper, we investigate the effects of various ordering and partitioning strategies on the performance of parallel CG and ILU(O) preconditioned CG (PCG) using different programming paradigms and architectures. Results show that for this class of applications: ordering significantly improves overall performance on both distributed and distributed shared-memory systems, that cache reuse may be more important than reducing communication, that it is possible to achieve message-passing performance using shared-memory constructs through careful data ordering and distribution, and that a hybrid MPI+OpenMP paradigm increases programming complexity with little performance gains. A implementation of CG on the Cray MTA does not require special ordering or partitioning to obtain high efficiency and scalability, giving it a distinct advantage for adaptive applications; however, it shows limited scalability for PCG due to a lack of thread level parallelism.

Oliker, Leonid↗

Probing spin and lifetime correlations in entangled hyperon-antihyperon pairs

Quantum entanglement has now been demonstrated in several hadronic systems, revealing that non-classical spin correlations survive even through the strong-interaction hadronization process. To date, however, all studies have focused exclusively on angular observables, leaving the possibility untouched that quantum coherence might also influence the decay times of entangled partners. In this work we propose data-driven tests of spin-lifetime and lifetime-lifetime correlations for $Λ-\bar{Λ}$ pairs produced in high-energy collisions. By examining the opening-angle distribution in slices of $Δt$, constructing a pair-wise spin-lifetime correlator, and testing a simple lifetime-lifetime covariance, we search for deviations from independent exponential decay that align with known spin correlations. Observation of nonzero lifetime correlations would compel a reassessment of how entanglement manifests in decaying systems, revealing hitherto unexplored temporal coherence.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

A Novel Modeling Framework for Computationally Efficient and Accurate Real-Time Ensemble Flood Forecasting With Uncertainty Quantification

A novel modeling framework that simultaneously improves accuracy, predictability, and computational efficiency is presented. It embraces the benefits of three modeling techniques integrated together for the first time: surrogate modeling, parameter inference, and data assimilation. The use of polynomial chaos expansion (PCE) surrogates significantly decreases computational time. Parameter inference allows for model faster convergence, reduced uncertainty, and superior accuracy of simulated results. Ensemble Kalman filters assimilate errors that occur during forecasting. To examine the applicability and effectiveness of the integrated framework, we developed 18 approaches according to how surrogate models are constructed, what type of parameter distributions are used as model inputs, and whether model parameters are updated during the data assimilation procedure. We conclude that (1) PCE must be built over various forcing and flow conditions, and in contrast to previous studies, it does not need to be rebuilt at each time step; (2) model parameter specification that relies on constrained, posterior information of parameters (so-called Selected specification) can significantly improve forecasting performance and reduce uncertainty bounds compared to Random specification using prior information of parameters; and (3) no substantial differences in results exist between single and dual ensemble Kalman filters, but the latter better simulates flood peaks. The use of PCE effectively compensates for the computational load added by the parameter inference and data assimilation (up to ~80 times faster). Therefore, the presented approach contributes to a shift in modeling paradigm arguing that complex, high-fidelity hydrologic and hydraulic models should be increasingly adopted for real-time and ensemble flood forecasting.

54 ENVIRONMENTAL SCIENCES↗

The Close AGN Reference Survey (CARS)

Active galactic nuclei (AGN) are thought to be responsible for the suppression of star formation in massive ~10 10 M ⊙ galaxies. While this process is a key feature in numerical simulations of galaxy formation, it has not been unambiguously confirmed in observational studies yet. The characterization of the star formation rate (SFR) in AGN host galaxies is challenging as AGN light contaminates most SFR tracers. Furthermore, the various SFR tracers are sensitive to different timescales of star formation from approximately a few to 100 Myr. We aim to obtain and compare SFR estimates from different tracers for AGN host galaxies in the Close AGN Reference Survey (CARS) to provide new observational insights into the recent SFR history of those systems. We constructed integrated panchromatic spectral energy distributions to measure the far infrared (FIR) luminosity as a tracer for the recent (< 100 Myr) SFR. In addition we used the integral-field unit observation of the CARS targets to employ the Hα luminosity decontaminated by AGN excitation as a proxy for the current (< 5 Myr) SFR. We find that significant differences in specific SFR of the AGN host galaxies as compared with the larger galaxy population disappear once cold gas mass, in addition to stellar mass, is used to predict the SFR for a specific AGN host. Only a tentative trend with the inclination of the host galaxy remains, such that SFR appears slightly lower than expected when the galaxies of unobscured AGN appear more edge-on along our line-of-sight, particular for dust-insensitive FIR-based SFRs. We identify individual galaxies with a significant difference in their SFR which can be related to a recent enhancement or decline in their SFR history that might be related to various processes including interactions, gas consumption, outflows, and AGN feedback. AGN can be present in various stages of galaxy evolution which makes it difficult to relate the SFR solely to the impact of the AGN. Our study shows that stellar mass alone is an insufficient parameter to estimate the expected SFR of an AGN host galaxy compared to the underlying non-AGN galaxy population. We do not find any strong evidence for a global positive or negative AGN feedback in the CARS sample. However, there is tentative evidence that (1) the relative orientation of the AGN engine with respect to the host galaxies might alter the efficiency of AGN feedback and that (2) the recent SFH is an additional tool to identify rapid changes in galaxy growth driven by the AGN or other processes.

79 ASTRONOMY AND ASTROPHYSICS↗

TAMM: Tensor algebra for many-body methods

Tensor algebra operations such as contractions in computational chemistry consume a significant fraction of the computing time on large-scale computing platforms. The widespread use of tensor contractions between large multi-dimensional tensors in describing electronic structure theory has motivated the development of multiple tensor algebra frameworks targeting heterogeneous computing platforms. In this paper, we present Tensor Algebra for Many-body Methods (TAMM), a framework for productive and performance-portable development of scalable computational chemistry methods. TAMM decouples the specification of the computation from the execution of these operations on available high-performance computing systems. With this design choice, the scientific application developers (domain scientists) can focus on the algorithmic requirements using the tensor algebra interface provided by TAMM, whereas high-performance computing developers can direct their attention to various optimizations on the underlying constructs, such as efficient data distribution, optimized scheduling algorithms, and efficient use of intra-node resources (e.g., graphics processing units). The modular structure of TAMM allows it to support different hardware architectures and incorporate new algorithmic advances. We describe the TAMM framework and our approach to the sustainable development of scalable ground- and excited-state electronic structure methods. We present case studies highlighting the ease of use, including the performance and productivity gains compared to other frameworks.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Bayesian characterization of uncertainties surrounding fluvial flood hazard estimates

Fluvial floods drive severe risk to riverine communities. There is strong evidence of increasing flood hazards in many regions around the world. The choice of methods and assumptions used in flood hazard estimates can impact the design of risk management strategies. In this study, we characterize the expected flood hazards conditioned on the uncertain model structures, model parameters, and prior distributions of the parameters. We construct a Bayesian framework for river stage return level estimation using a nonstationary statistical model that relies exclusively on the Indian Ocean Dipole Index. We show that ignoring uncertainties can lead to biased estimation of expected flood hazards. We find that the considered model parametric uncertainty is more influential than model structures and model priors. Our results highlight the importance of incorporating uncertainty in extreme flood stage estimates, and are of practical use for informing water infrastructure designs in a changing climate.

54 ENVIRONMENTAL SCIENCES↗

Numerical simulations of impulsively generated Alfvén waves in solar magnetic arcades

We perform numerical simulations of impulsively generated Alfvén waves in an isolated solar arcade, which is gravitationally stratified and magnetically confined. We study numerically the propagation of Alfvén waves along the magnetic structure that extends from the lower chromosphere, where the waves are generated, to the solar corona, and analyze the influence of the arcade size and the width of the initial pulses on the wave propagation and reflection. Our model of the solar atmosphere is constructed by adopting the temperature distribution based on the semi-empirical VAL-C model and specifying the curved magnetic field lines that constitute the asymmetric magnetic arcade. The propagation and reflection of Alfvén waves in this arcade is described by 2.5-dimensional magnetohydrodynamic equations that are numerically solved by the FLASH code. Our numerical simulations reveal that the Alfvén wave amplitude decreases as a result of a partial reflection of Alfvén waves in the solar transition region, and that the waves that are not reflected leak through the transition region and reach the solar corona. We also find the decrement of the attenuation time of Alfvén waves for wider initial pulses. Moreover, our results show that the propagation of Alfvén waves in the arcade is affected by the spatial dependence of the Alfvén speed, which leads to phase mixing that is stronger for more curved and larger magnetic arcades. We discuss the processes that affect the Alfvén wave propagation in an asymmetric solar arcade and conclude that besides phase mixing in the magnetic field configuration, the plasma properties of the arcade, the size of the initial pulse, and the structure of the solar transition region all play a vital role in the Alfvén wave propagation.

79 ASTRONOMY AND ASTROPHYSICS↗

MULTI-SHELL MAGNETIC TWISTERS AS A NEW MECHANISM FOR CORONAL HEATING AND SOLAR WIND ACCELERATION

We perform numerical simulations of impulsively generated Alfvén waves in an isolated photospheric flux tube and explore the propagation of these waves along such magnetic structure that extends from the photosphere, where these waves are triggered, to the solar corona, and we analyze resulting magnetic shells. Our model of the solar atmosphere is constructed by adopting the temperature distribution based on the semi-empirical model and specifying the curved magnetic field lines that constitute the magnetic flux tube that is rooted in the solar photosphere. The evolution of the solar atmosphere is described by 3D, ideal MHD equations that are numerically solved by the FLASH code. Our numerical simulations reveal, based on the physical properties of the multi-shell magnetic twisters and the amount of energy and momentum associated with them, that these multi-shell magnetic twisters may be responsible for the observed heating of the lower solar corona and for the formation of solar wind. Moreover, it is likely that the existence of these twisters can be verified by high-resolution observations.

79 ASTRONOMY AND ASTROPHYSICS↗

Submillimeter observations of CLASH 2882 and the evolution of dust in this galaxy

Two millimeter observations of the MACS J1149.6+2223 cluster have detected a source that was consistent with the location of the lensed MACS 1149-JD galaxy at z = 9.6. A positive identification would have rendered this galaxy as the youngest dust forming galaxy in the universe. Follow up observation with the AzTEC 1.1 mm camera and the IRAM NOrthern Extended Millimeter Array (NOEMA) at 1.3 mm have not confirmed this association. In this paper we show that the NOEMA observations associate the 2 mm source with [PCB2012] 2882,{sup 12} source number 2882 in the Cluster Lensing And Supernova survey with Hubble (CLASH) catalog of MACS J1149.6+2223. This source, hereafter referred to as CLASH 2882, is a gravitationally lensed spiral galaxy at z = 0.99. We combine the Goddard IRAM Superconducting 2-Millimeter Observer (GISMO) 2 mm and NOEMA 1.3 mm fluxes with other (rest frame) UV to far-IR observations to construct the full spectral energy distribution of this galaxy, and derive its star formation history, and stellar and interstellar dust content. The current star formation rate of the galaxy is 54μ{sup −1} M{sub ⊙} yr{sup −1}, and its dust mass is about 5 × 10{sup 7}μ{sup −1} M{sub ⊙}, where μ is the lensing magnification factor for this source, which has a mean value of 2.7. The inferred dust mass is higher than the maximum dust mass that can be produced by core collapse supernovae and evolved AGB stars. As with many other star forming galaxies, most of the dust mass in CLASH 2882 must have been accreted in the dense phases of the interstellar medium.

79 ASTRONOMY AND ASTROPHYSICS↗

Plug & play directed evolution of proteins with gradient-based discrete MCMC

Abstract A long-standing goal of machine-learning-based protein engineering is to accelerate the discovery of novel mutations that improve the function of a known protein. We introduce a sampling framework for evolving proteins in silico that supports mixing and matching a variety of unsupervised models, such as protein language models, and supervised models that predict protein function from sequence. By composing these models, we aim to improve our ability to evaluate unseen mutations and constrain search to regions of sequence space likely to contain functional proteins. Our framework achieves this without any model fine-tuning or re-training by constructing a product of experts distribution directly in discrete protein space. Instead of resorting to brute force search or random sampling, which is typical of classic directed evolution, we introduce a fast Markov chain Monte Carlo sampler that uses gradients to propose promising mutations. We conduct in silico directed evolution experiments on wide fitness landscapes and across a range of different pre-trained unsupervised models, including a 650 M parameter protein language model. Our results demonstrate an ability to efficiently discover variants with high evolutionary likelihood as well as estimated activity multiple mutations away from a wild type protein, suggesting our sampler provides a practical and effective new paradigm for machine-learning-based protein engineering.

59 BASIC BIOLOGICAL SCIENCES↗