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NASA NTRSDate not supplied

Simulation of Radiation-Induced DNA Damage With the Code RITRACKS

INTRODUCTION DNA damage is one of the most physiologically important effects of ionizing radiation. Clustered DNA damage events, like double-strand breaks (DSBs), have the most notable biological consequences. DNA damage types depend on both the track structure of the radiation and the spatial organization of the DNA. High linear energy transfer (LET) charged nuclei, found in galactic cosmic rays (GCR), are known to produce large numbers of complex DNA damage events. The human genome is packaged into chromatin, which can take on locus-dependent and cell type-dependent spatial conformations that correspond to epigenetic states, such as more open, extended structures in transcriptionally active chromatin. These epigenetic differences can affect DNA break patterns in response to ionizing radiation, potentially creating distinct DNA repair and signaling outcomes across the genome in different cells. MATERIAL AND METHODS The code RITRACKS (Relativistic Ion Tracks), which simulates stochastic radiation track structures and radiation chemistry, was used to model damage on isolated and histone-bound DNA by various types of ions and photons. The changes made to the code to perform radiation-induced DNA damage, and simulation results on single nucleosomes are given in our recent paper. In this work, the DNA building capabilities of RITRACKS have been extended to simulate more complex DNA structures build on the coarse-grain simulation framework meso-WLCsim. This code can sample generic chromatin fiber conformation ensembles based on the geometry of nucleosomes and mechanical properties of DNA. Using RITRACKS, we simulated the fragment length distributions (FLD) of irradiated DNA structures built using the chromatin conformations of WLCsim and obtained results representative of those obtained with Radiation-Induced Correlated Cleavage with sequencing (RICC-Seq) experiments [6]. We have also performed Fe ion and photon irradiations of K562, IMR90, BJ and RPE-1 cells at NSRL to experimentally validate results. Sample processing and data analysis are in progress and any available preliminary results will be discussed. DISCUSSION The recent updates in the code RITRACKS allow the calculation of several quantities such as the DNA damage yield and the FLD. This approach can be used to model epigenetic state-specific chromatin structure parameters to leverage the epigenetic state data available for many human cell types to infer relative DNA damage sensitivity among genomic loci.

I Plante↗

NASA NTRSDate not supplied

Dynamical Sensitivity in Response to a Wide Range of Abrupt CO 2 Forcings

An improved understanding of dynamical variability is important for projecting future changes in extratropical weather and the interaction between the extratropical troposphere and the tropics, stratosphere, cryosphere and ocean. Despite their simplicity, the abrupt 2x- and 4xCO 2 forcing simulations from the Coupled Model Intercomparison Project (CMIP) Phase 6 DECK experiments enable a mechanistic look into the forcing and feedback response characteristics of models that can be unambiguously attributed to an increase in carbon dioxide concentrations. Thus, while typically used to evaluate the climate sensitivity in models, with a primary focus on global surface temperature change, here we focus on several measures of extratropical variability, including projected changes in the storm tracks and in stratospheric polar vortex variability. Results are primarily based on simulations produced using low- and high-top versions of the NASA Goddard Institute for Space Studies Model (ModelE) but results are also presented from the larger CMIP6 multi-model ensemble. In addition to the 2x- and 4xCO 2 simulations, we also explore the linearity of the response of extratropical dynamical variability in ModelE to varying levels of CO 2 spanning the range 1/8-8xCO 2 . In particular, we show that the expansion of the jet streams varies nonlinearly with increasing CO 2 , especially in the Northern Hemisphere, and that this can be interpreted in terms of variations in ocean heat transport. The impact of composition feedbacks on changes in variability is also discussed.

dynamical variability↗

NASA NTRSDate not supplied

Ice Sheet and Ice Shelf Freshwater Forcing of the NASA GISS ModelE GCM

Recent mass loss from ice sheets and ice shelves is now persistent and prolonged enough that it impacts downstream oceanographic conditions. To demonstrate this, we use an ensemble of coupled GISS-E2.1-G (a CMIP6 model) simulations forced with historical estimates of anomalous freshwater, in addition to other climate forcings, from 1990 through 2019. In this ensemble there are detectable differences in zonal-mean sea surface temperatures (SST) and sea ice in the Southern Ocean, and in regional sea level around Antarctica and in the western North Atlantic. These impacts mostly improve the model's representation of historical changes, including reversing the forced trends in Southern Ocean surface temperature and Antarctic sea ice. The changes in SST may have implications for estimates of the SST pattern effect on climate sensitivity and for cloud feedbacks. We conclude that the changes are sufficiently large that model groups should strive to include more accurate estimates of these drivers in all-forcing historical simulations in future coupled model intercomparisons.

Ice sheet↗

DOE OSTI2025

Projected changes in cross-equatorial northerly surges and their hydrological impacts in the near future

Recent decades have witnessed unprecedented extreme precipitation and catastrophic flooding in some of the most populated regions in Southeast Asia during boreal winter. These extreme events are often influenced by the cross-equatorial northerly surge (CENS), characterized by a strengthening of northerly moist monsoon winds south of the equator in the western Maritime Continent. However, the potential future changes in CENS and its hydrological impacts remain underexplored. Here, using an ensemble of high-resolution climate model simulations (CMIP6 HighResMIP), we show that the regional impacts of CENS on the intensity and frequency of extreme precipitation events are projected to significantly increase in the near future (2030–2050), particularly over the adjacent coastal regions of southern Indonesia and northwestern Australia. More specifically, the risk of CENS-related extreme precipitation is projected to increase by up to 39 ± 1.2% relative to the seasonal probability, despite no apparent changes in the CENS characteristics in the near future. Such stronger impact is attributed to the enhanced moistening efficiency and moist static instability due to a more humid and warmer environment, which leads to more intense CENS convection. Our results suggest the need for effective monitoring and disaster managements to respond to the increasing severity of such events in the near future.

Climate sciences↗

DOE OSTI2026

Antarctic ice sheet model comparison with uncurated geological constraints shows that higher spatial resolution improves deglacial reconstructions

Accurately reconstructing past changes to the shape and volume of the Antarctic ice sheet relies on the use of physically based and thus internally consistent ice sheet modeling, benchmarked against spatially limited geologic data. The challenge in model benchmarking against geologic data is diagnosing whether model-data misfits are the result of an inadequate model, inherently noisy or biased geologic data, and/or incorrect association between modeled quantities and geologic observations. In this work we address this challenge by (i) the development and use of a new model-data evaluation framework applied to an uncurated data set of geologic constraints, and (ii) nested high-spatial-resolution modeling designed to test the hypothesis that model resolution is an important limitation in matching geologic data. While previous approaches to model benchmarking employed highly curated datasets, our approach applies an automated screening and quality control algorithm to an uncurated public dataset of geochronological observations (specifically, cosmogenic-nuclide exposure-age measurements from glacial deposits in ice-free areas). This optimizes data utilization by including more geological constraints, reduces potential interpretive bias, and allows unsupervised assimilation of new data as they are collected. We also incorporate a nested model framework in which high-resolution domains are downscaled from a continent-wide ice sheet model. We highlight the application of this framework by applying these methods to a small ensemble of deglacial ice-sheet model simulations, and demonstrate that the nested approach improves the ability of model simulations to match exposure age data collected from areas of complex topography and ice flow. We develop a range of diagnostic model-data comparison metrics to provide more insight into model performance than possible from a single-valued misfit statistic, showing that different metrics capture different aspects of ice sheet deflation.

Geosciences↗

NASA NTRS2011

Sulfate Aerosol Control of Tropical Atlantic Climate over the Twentieth Century

The tropical Atlantic interhemispheric gradient in sea surface temperature significantly influences the rainfall climate of the tropical Atlantic sector, including droughts over West Africa and Northeast Brazil. This gradient exhibits a secular trend from the beginning of the twentieth century until the 1980s, with stronger warming in the south relative to the north. This trend behavior is on top of a multi-decadal variation associated with the Atlantic multi-decadal oscillation. A similar long-term forced trend is found in a multimodel ensemble of forced twentieth-century climate simulations. Through examining the distribution of the trend slopes in the multimodel twentieth-century and preindustrial models, the authors conclude that the observed trend in the gradient is unlikely to arise purely from natural variations; this study suggests that at least half the observed trend is a forced response to twentieth-century climate forcings. Further analysis using twentieth-century single-forcing runs indicates that sulfate aerosol forcing is the predominant cause of the multimodel trend. The authors conclude that anthropogenic sulfate aerosol emissions, originating predominantly from the Northern Hemisphere, may have significantly altered the tropical Atlantic rainfall climate over the twentieth century

Chang, C.-Y.↗

NASA NTRS2018

Local Versus Remote Contributions of Soil Moisture to Near-Surface Temperature Variability

Soil moisture variations have a straightforward impact on overlying air temperatures, wetter soils can induce higher evaporative cooling of the soil and thus, locally, cooler temperatures overall. Not known, however, is the degree to which soil moisture variations can affect remote air temperatures through their impact on the atmospheric circulation. In this talk we describe a two-pronged analysis that addresses this question. In the first segment, an extensive ensemble of NASA/GSFC GEOS-5 atmospheric model simulations is analyzed statistically to isolate and quantify the contributions of various soil moisture states, both local and remote, to the variability of air temperature at a given local site. In the second segment, the relevance of the derived statistical relationships is evaluated by applying them to observations-based data. Results from the second segment suggest that the GEOS-5-based relationships do, at least to first order, hold in nature and thus may provide some skill to forecasts of air temperature at subseasonal time scales, at least in certain regions.

Koster, R.↗

NASA NTRS2017

Evolving Understanding of Antarctic Ice-Sheet Physics and Ambiguity in Probabilistic Sea-Level Projections

Mechanisms such as ice-shelf hydrofracturing and ice-cliff collapse may rapidly increase discharge from marine-based ice sheets. Here, we link a probabilistic framework for sea-level projections to a small ensemble of Antarctic ice-sheet (AIS) simulations incorporating these physical processes to explore their influence on global-mean sea-level (GMSL) and relative sea-level (RSL). We compare the new projections to past results using expert assessment and structured expert elicitation about AIS changes. Under high greenhouse gas emissions (Representative Concentration Pathway [RCP] 8.5), median projected 21st century GMSL rise increases from 79 to 146 cm. Without protective measures, revised median RSL projections would by 2100 submerge land currently home to 153 million people, an increase of 44 million. The use of a physical model, rather than simple parameterizations assuming constant acceleration of ice loss, increases forcing sensitivity: overlap between the central 90% of simulations for 2100 for RCP 8.5 (93-243 cm) and RCP 2.6 (26-98 cm) is minimal. By 2300, the gap between median GMSL estimates for RCP 8.5 and RCP 2.6 reaches >10 m, with median RSL projections for RCP 8.5 jeopardizing land now occupied by 950 million people (versus 167 million for RCP 2.6). The minimal correlation between the contribution of AIS to GMSL by 2050 and that in 2100 and beyond implies current sea-level observations cannot exclude future extreme outcomes. The sensitivity of post-2050 projections to deeply uncertain physics highlights the need for robust decision and adaptive management frameworks.

Kopp, Robert E.↗

NASA NTRS2018

Past and Future Drought in Mongolia

The severity of recent droughts in semiarid regions is increasingly attributed to anthropogenic climate change, but it is unclear whether these moisture anomalies exceed those of the past and how past variability compares to future projections. On the Mongolian Plateau, a recent decade-long drought that exceeded the variability in the instrumental record was associated with economic, social, and environmental change. We evaluate this drought using an annual reconstruction of the Palmer Drought Severity Index (PDSI) spanning the last 2060 years in concert with simulations of past and future drought through the year 2100 CE. We show that although the most recent drought and pluvial were highly unusual in the last 2000 years, exceeding the 900-year return interval in both cases, these events were not unprecedented in the 2060-year reconstruction, and events of similar duration and severity occur in paleoclimate, historical, and future climate simulations. The Community Earth System Model (CESM) ensemble suggests a drying trend until at least the middle of the 21st century, when this trend reverses as a consequence of elevated precipitation. Although the potential direct effects of elevated CO2 on plant water use efficiency exacerbate uncertainties about future hydroclimate trends, these results suggest that future drought projections for Mongolia are unlikely to exceed those of the last two millennia, despite projected warming.

drought projection↗

NASA NTRS2020

Impact of a Regional US Drought on Land and Atmospheric Carbon

The impacts of drought on regional land and atmospheric carbon are still poorly understood. Here we quantify the impact of a regional US drought on land carbon fluxes (Gross Primary Production, or GPP, and Net Biosphere Production, or NBP) and atmospheric carbon (CO2) by imposing an idealized 3-month meteorological drought in an ensemble of coupled land-atmosphere climate simulations. The imposed drought, applied to the lower Mississippi River Valley (~500,000 km (exp 2)), leads to a 23% GPP reduction in the drought area in the month immediately following the drought’s termination. The drought also caused GPP reductions in some remote areas through drought-induced impacts on remote meteorology, particularly the areas adjacent to the imposed drought. In the remote areas, the induced precipitation changes are responsible for most of the anomalous land productivity. The impact of the drought-induced meteorological anomalies on GPP is greater than that of the CO2 anomalies by at least an order of magnitude. While their impact on GPP is secondary, the drought-induced atmospheric CO2 anomalies near the land surface can be as large as 3.57ppm. The significant CO2 anomalies cover an area up to three times of that of the imposed drought, suggesting that atmospheric transport needs to be considered in the interpretation of drought-induced CO2 anomalies in the atmosphere. The imposed drought also leads to column-averaged CO2 increases of up to 0.78ppm, which is at the edge of the uncertainty from single soundings of current greenhouse gas (GHG) observing satellites.

Eunjee Lee↗

NASA NTRS2019

Inter-annual variation of tropical cyclones simulated by GEOS-5 AGCM with modified convection scheme

The Goddard Earth Observing System version 5 (GEOS-5) global climate model with a 50-km horizontal resolution is forced by observed sea surface temperature (SST) to examine the fidelity of the seasonal-mean and inter-annual variation of tropical cyclones (TCs) in the western North Pacific (WNP) and the North Atlantic (NATL). The standard Relaxed Arakawa Schubert (RAS) deep convection scheme is modified to improve the representation of TCs, where the scheme implements a stochastic limit of the cumulus entrainment rate. The modification drives mid- and upper-tropospheric cooling and low- to mid-tropospheric drying in the background state, which tends to increase atmospheric instability. This enables the model to increase convective variability on an intra-seasonal timescale and improve the simulation of intense storms. Five-member ensemble runs with the modified RAS scheme for 12 years (1998–2009) exhibit realistic spatial distributions in the climatological-mean TC development area and their pathways over WNP and NATL. The GCM is able to reproduce the inter-annual variation of accumulated cyclone energy (ACE) by prescribing yearly varying observed SST even though the individual TC intensity is still underpredicted. A sensitivity of TC activity to El Niño–Southern Oscillation (ENSO) phase is also reproduced realistically over WNP in terms of the spatial pattern changes in the main development region and TC pathways. However, the model exhibits a notable deficiency in NATL in reproducing the observed inter-annual variation of TC activity and the sensitivity to the ENSO.

accumulated cyclone energy↗

NASA NTRSDate not supplied

Model Calibration for Cancer Risk Projections According to Uncertain Data

This paper presents forward and inverse formulations for the calibration of computational models according to uncertain data. Uncertainty in the data might be caused by a poor metrology system, measurement noise, missing or uncontrollable input variables, or by the inability to directly measure the inputs and/or outputs of interest. The forward approach performs the calibration in the space of the model’s output thereby requiring repeated model simulations. Conversely, the inverse approach leverages an ensemble of solutions to an inverse problem in order to perform the calibration in the space of the model’s parameters. As such, the computational demands of the inverse approach are considerably lower. These strategies are applied to the calibration of a radiation model that in-forms cancer risk projections for future deep space missions.

uncertainty quantification↗

NASA NTRS2022

Processing Tomato Production Is Expected to Decrease By 2050 Due to the Projected Increase in Temperature

The global processing tomato production is concentrated in a small number of regions where climate change will have a significant impact on the future supply. Process-based tomato models project that the production in the three main producing countries (the United States, Italy, and China, representing 65% of global production) will decrease 6% by 2050, compared to the baseline period of 1980-2009. The predicted reduction in processing tomato production is due to a simulated increase in air temperature. Under an ensemble of projected climate scenarios, California and Italy might not be able to sustain the current levels of processing tomato production due to water resources constraints. Cooler producing regions, such as China and the northern parts of California, stand to improve their competitive advantage. The projected environmental changes indicate that the main growing regions of processing tomatoes might change in the coming decades.

Tomato production↗

NASA NTRSDate not supplied

DeepONet-Assisted Optimization of Surface Topography for Transition Delay in a Mach 4.5 Boundary Layer

We use deep learning, an ensemble variational technique (EnVar), and direct numerical simulations(DNS) to design an optimal topography for a two-dimensional roughness element that delays the on-set of laminar-turbulent transition in a Mach 4.5 flat-plate boundary layer. Deep operator networks (DeepONets), which have the known ability to learn complex nonlinear operators within dynamical systems, are used for machine learning. For the baseline configuration of a smooth flat plate, the second-mode waves at the DNS inflow cause a quick nonlinear breakdown of the high-speed boundary layer within the computational domain. Results reported in the present study validate the ability of DeepONets to model the transition delay via a given topography of the roughness element. The computing cost to optimize the rough-ness element for minimal skin-friction drag is substantially lowered by the DeepONets-based reduced-order model. In comparison to the baseline method of EnVar optimization based on DNS alone, the DeepONets-based EnVar optimizer is able to delay transition past the outflow boundary of the computational domain while utilizing almost 5–6 times fewer DNS.

Machine Learning↗

DOE OSTI2024

Evidential Deep Learning for Probabilistic Modelling of Extreme Storm Events

Uncertainty quantification (UQ) methods play an important role in reducing errors in weather forecasting. Conventional approaches in UQ for weather forecasting rely on generating an ensemble of forecasts from physics-based simulations to estimate the uncertainty. However, it is computationally expensive to generate many forecasts to predict real-time extreme weather events. Evidential Deep Learning (EDL) is an uncertainty-aware deep learning approach designed to provide confidence about its predictions using only one forecast. It treats learning as an evidence acquisition process where more evidence is interpreted as increased predictive confidence. We apply EDL to storm forecasting using real-world weather datasets and compare its performance with traditional methods. Our findings indicate that EDL not only reduces computational overhead but also enhances predictive uncertainty. This method opens up novel opportunities in research areas such as climate risk assessment, where quantifying the uncertainty about future climate is crucial.

97 MATHEMATICS AND COMPUTING↗

NASA NTRS2022

Assimilation of SMAP Products for Improving Streamflow Simulations over Tropical Climate Region—Is Spatial Information More Important Than Temporal Information?

Streamflow is one of the key variables in the hydrological cycle. Simulation and forecasting of streamflow are challenging tasks for hydrologists, especially in sparsely gauged areas. Coarse spatial resolution remote sensing soil moisture products (equal to or larger than 9 km) are often assimilated into hydrological models to improve streamflow simulation in large catchments. This study uses the Ensemble Kalman Filter (EnKF) technique to assimilate SMAP soil moisture products at the coarse spatial resolution of 9 km (SMAP 9 km), and downscaled SMAP soil moisture product at the higher spatial resolution of 1 km (SMAP 1 km), into the Soil and Water Assessment Tool (SWAT) to investigate the usefulness of different spatial and temporal resolutions of remotely sensed soil moisture products in streamflow simulation and forecasting. The experiment was set up for eight catchments across the tropical climate of Vietnam, with varying catchment areas from 267 to 6430 km^2 during the period 2017–2019. We comprehensively evaluated the EnKF-based SWAT model in simulating streamflow at low, average, and high flow. Our results indicated that high-spatial resolution of downscaled SMAP 1 km is more beneficial in the data assimilation framework in aiding the accuracy of streamflow simulation, as compared to that of SMAP 9 km, especially for the small catchments. Our analysis on the impact of observation resolution also indicates that the improvement in the streamflow simulation with data assimilation is more significant at catchments where downscaled SMAP 1 km has fewer missing observations. This study is helpful for adding more understanding of performances of soil moisture data assimilation based hydrological modelling over the tropical climate region, and exhibits the potential use of remote sensing data assimilation in hydrology.

soil moisture↗

NASA NTRS2023

The optimization of model ensemble composition and size can enhance the robustness of crop yield projections

Linked climate and crop simulation models are widely used to assess the impact of climate change on agriculture. However, it is unclear how ensemble configurations (model composition and size) influence crop yield projections and uncertainty. Here, we investigate the influences of ensemble configurations on crop yield projections and modeling uncertainty from Global Gridded Crop Models and Global Climate Models under future climate change. We performed a cluster analysis to identify distinct groups of ensemble members based on their projected outcomes, revealing unique patterns in crop yield projections and corresponding uncertainty levels, particularly for wheat and soybean. Furthermore, our findings suggest that approximately six Global Gridded Crop Models and 10 Global Climate Models are sufficient to capture modeling uncertainty, while a cluster-based selection of 3-4 Global Gridded Crop Models effectively represents the full ensemble. The contribution of individual Global Gridded Crop Models to overall uncertainty varies depending on region and crop type, emphasizing the importance of considering the impact of specific models when selecting models for local-scale applications. Our results emphasize the importance of model composition and ensemble size in identifying the primary sources of uncertainty in crop yield projections, offering valuable guidance for optimizing ensemble configurations in climate-crop modeling studies tailored to specific applications.

Agriculture↗

DOE OSTI2025

High-Resolution Model Intercomparison Project phase 2 (HighResMIP2) towards CMIP7

Abstract. Robust projections and predictions of climate variability and change, particularly at regional scales, rely on the driving processes being represented with fidelity in model simulations. Consequently, the role of enhanced horizontal resolution in improved process representation in all components of the climate system continues to be of great interest. Recent simulations suggest the possibility of significant changes in both large-scale aspects of the ocean and atmospheric circulations and in the regional responses to climate change, as well as improvements in representations of small-scale processes and extremes, when resolution is enhanced. The first phase of the High-Resolution Model Intercomparison Project (HighResMIP1) was successful at producing a baseline multi-model assessment of global simulations with model grid spacings of 25–50 km in the atmosphere and 10–25 km in the ocean, a significant increase when compared to models with standard resolutions on the order of 1° that are typically used as part of the Coupled Model Intercomparison Project (CMIP) experiments. In addition to over 250 peer-reviewed manuscripts using the published HighResMIP1 datasets, the results were widely cited in the Intergovernmental Panel on Climate Change report and were the basis of a variety of derived datasets, including tracked cyclones (both tropical and extratropical), river discharge, storm surge, and impact studies. There were also suggestions from the few ocean eddy-rich coupled simulations that aspects of climate variability and change might be significantly influenced by improved process representation in such models. The compromises that HighResMIP1 made should now be revisited, given the recent major advances in modelling and computing resources. Aspects that will be reconsidered include experimental design and simulation length, complexity, and resolution. In addition, larger ensemble sizes and a wider range of future scenarios would enhance the applicability of HighResMIP. Therefore, we propose the High-Resolution Model Intercomparison Project phase 2 (HighResMIP2) to improve and extend the previous work, to address new science questions, and to further advance our understanding of the role of horizontal resolution (and hence process representation) in state-of-the-art climate simulations. With further increases in high-performance computing resources and modelling advances, along with the ability to take full advantage of these computational resources, an enhanced investigation of the drivers and consequences of variability and change in both large- and synoptic-scale weather and climate is now possible. With the arrival of global cloud-resolving models (currently run for relatively short timescales), there is also an opportunity to improve links between such models and more traditional CMIP models, with HighResMIP providing a bridge to link understanding between these domains. HighResMIP also aims to link to other CMIP projects and international efforts such as the World Climate Research Program lighthouse activities and various digital twin initiatives. It also has the potential to be used as training and validation data for the fast-evolving machine learning climate models.

54 ENVIRONMENTAL SCIENCES↗