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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 397 records · Page 22
All sourcesNASA NTRSDOE OSTI
DOE OSTI2020

Short-Term Stable Isotope Probing of Proteins Reveals Taxa Incorporating Inorganic Carbon in a Hot Spring Microbial Mat

The upper green layer of the chlorophototrophic microbial mats associated with the alkaline siliceous hot springs of Yellowstone National Park consists of oxygenic cyanobacteria ( Synechococcus spp.), anoxygenic Roseiflexus spp., and several other anoxygenic chlorophototrophs. Synechococcus spp. are believed to be the main fixers of inorganic carbon (C i ), but some evidence indicates that Roseiflexus spp. also contribute to inorganic carbon fixation during low-light, anoxic morning periods. Contributions of other phototrophic taxa have not been investigated. In order to follow the pathway of C i incorporation into different taxa, mat samples were incubated with [ 13 C]bicarbonate for 3 h during the early-morning, low-light anoxic period. Extracted proteins were treated with trypsin and analyzed by mass spectrometry, leading to peptide identifications and peptide isotopic profile signatures containing evidence of 13 C label incorporation. A total of 25,483 peptides, corresponding to 7,221 proteins, were identified from spectral features and associated with mat taxa by comparison to metagenomic assembly sequences. A total of 1,417 peptides, derived from 720 proteins, were detectably labeled with 13 C. Most 13 C-labeled peptides were derived from proteins of Synechococcus spp. and Roseiflexus spp. Chaperones and proteins of carbohydrate metabolism were most abundantly labeled. Proteins associated with photosynthesis, C i fixation, and N 2 fixation were also labeled in Synechococcus spp. Importantly, most proteins of the 3-hydroxypropionate bi-cycle for C i fixation in Roseiflexus spp. were labeled, establishing that members of this taxocene contribute to C i fixation. Other taxa showed much lower [ 13 C]bicarbonate incorporation. IMPORTANCE Yellowstone hot spring mats have been studied as natural models for understanding microbial community ecology and as modern analogs of stromatolites, the earliest community fossils on Earth. Stable-isotope probing of proteins (Pro-SIP) permitted short-term interrogation of the taxa that are involved in the important process of light-driven C i fixation in this highly active community and will be useful in linking other metabolic processes to mat taxa. Here, evidence is presented that Roseiflexus spp., which use the 3-hydroxypropionate bi-cycle, are active in C i fixation. Because this pathway imparts a lower degree of selection of isotopically heavy C i than does the Calvin-Benson-Bassham cycle, the results suggest a mechanism to explain why the natural abundance of 13 C in mat biomass is greater than expected if only the latter pathway were involved. Understanding how mat community members influence the 13 C/ 12 C ratios of mat biomass will help geochemists interpret the 13 C/ 12 C ratios of organic carbon in the fossil record.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2023

Insights into ENSO Diversity from an Intermediate Coupled Model. Part II: Role of Nonlinear Dynamics and Stochastic Forcing

Abstract In this study, we investigate how a single leading linear El Niño–Southern Oscillation (ENSO) mode, as studied in Part I, leads to the irregular coexistence of central Pacific (CP) and eastern Pacific (EP) ENSO, a phenomenon known as ENSO spatiotemporal diversity. This diversity is fundamentally generated by deterministic nonlinear pathways to chaos via the period-doubling route and, more prevailingly, the subharmonic resonance route with the presence of a seasonally varying basic state. When residing in the weakly nonlinear regime, the coupled system sustains a weak periodic oscillation with a mixed CP/EP pattern as captured by the linear ENSO mode. With a stronger nonlinearity effect, the ENSO behavior experiences a period-doubling bifurcation. The single ENSO orbit splits into coexisting CP-like and EP-like ENSO orbits. A sequence of period-doubling bifurcation results in an aperiodic oscillation featuring irregular CP and EP ENSO occurrences. The overlapping of subharmonic resonances between ENSO and the seasonal cycle allows this ENSO irregularity and diversity to be more readily excited. In the strongly nonlinear regime, the coupled system is dominated by regular EP ENSO. The deterministic ENSO spatiotemporal diversity is thus confined to a relatively narrow range corresponding to a moderately unstable ENSO mode. Stochastic forcing broadens this range and allows ENSO diversity to occur when the ENSO mode is weakly subcritical. A close relationship among a weakened mean zonal temperature gradient, stronger ENSO activity, and more (fewer) occurrences of EP (CP) ENSO is noted, indicating that ENSO–mean state interaction may yield ENSO regime modulations on the multidecadal time scale.

Geng, Licheng↗
DOE OSTI2018

Genomic and Genetic Insights Into a Cosmopolitan Fungus, Paecilomyces variotii (Eurotiales)

Species in the genus Paecilomyces , a member of the fungal order Eurotiales, are ubiquitous in nature and impact a variety of human endeavors. Here, the biology of one common species, Paecilomyces variotii , was explored using genomics and functional genetics. Sequencing the genome of two isolates revealed key genome and gene features in this species. A striking feature of the genome was the two-part nature, featuring large stretches of DNA with normal GC content separated by AT-rich regions, a hallmark of many plant-pathogenic fungal genomes. These AT-rich regions appeared to have been mutated by repeat-induced point (RIP) mutations. We developed methods for genetic transformation of P. variotii , including forward and reverse genetics as well as crossing techniques. Using transformation and crossing, RIP activity was identified, demonstrating for the first time that RIP is an active process within the order Eurotiales. A consequence of RIP is likely reflected by a reduction in numbers of genes within gene families, such as in cell wall degradation, and reflected by growth limitations on P. variotii on diverse carbon sources. Furthermore, using these transformation tools we characterized a conserved protein containing a domain of unknown function (DUF1212) and discovered it is involved in pigmentation.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2019

Features of Accretion-phase Gravitational-wave Emission from Two-dimensional Rotating Core-collapse Supernovae

We explore the influence of progenitor mass and rotation on the gravitational-wave (GW) emission from core-collapse supernovae, during the postbounce, preexplosion, accretion phase. We present the results from 15 two-dimensional (2D) neutrino radiation-hydrodynamic simulations from initial stellar collapse to ~300 ms after core bounce. We examine the features of the GW signals for four zero-age main sequence (ZAMS) progenitor masses ranging from 12 M ⊙ to 60 M ⊙ and four core rotation rates from 0 to 3 rad s -1 . We find that GW strain immediately around core bounce is fairly independent of ZAMS mass and—consistent with previous findings—that it is more heavily dependent on the core angular momentum. At later times, all nonrotating progenitors exhibit loud GW emission, which we attribute to vibrational g-modes of the protoneutron star (PNS) excited by convection in the postshock layer and the standing accretion shock instability (SASI). We find that increasing rotation rates results in muting of the accretion-phase GW signal due to centrifugal effects that inhibit convection in the postshock region, quench the SASI, and slow the rate at which the PNS peak vibrational frequency increases. Finally, we verify the efficacy of our approximate general relativistic (GR) effective potential treatment of gravity by comparing our core bounce GW strains with the recent 2D GR results of other groups.

79 ASTRONOMY AND ASTROPHYSICS↗
NASA NTRS1975

A new structural analysis/synthesis capability - ACCESS

The creation of an efficient automated capability for minimum weight design of structures is reported. The ACCESS 1 computer program combines finite element analysis techniques and mathematical programming algorithms using an innovative collection of approximation concepts. Design variable linking, constraint deletion techniques and approximate analysis methods are used to generate a sequence of small explicit mathematical programming problems which retain the essential features of the design problem. Organization of the finite element analysis is carefully matched to the design optimization task. The efficiency of the ACCESS 1 program is demonstrated by giving results for several example problems.

Schmit, L. A.↗
NASA NTRS1976

Ice reconnaissance by satellite

The paper describes the significant milestones in the use of satellites for snow and ice monitoring. The feasibility of such monitoring was demonstrated by the Tiros 2 satellite in 1961. Nimbus 1 showed that breaks in the sea ice can be easily monitored during continuous nighttime conditions; Nimbus 3 showed the practicality of delineating regions of active melting of ice and snow in temperate areas. Landsat data have been found to be particularly useful for monitoring and studying glaciers and their attendant surface features. Ice concentration can be determined with reasonable accuracy from a sequence of electronically scanned microwave radiomenter images made aboard Nimbus 5. In the future we can expect improved sensors and spacecraft systems with longer operating lives.

Gloersen, P.↗
NASA NTRS1978

Mare volcanism in the Herigonius region of the moon

The paper considers the area in the vicinity of the crater Herigonius. This area contains numerous sinuous rilles, craters with irregular planimetric form, possible pyroclastic cones, and other features of probable volcanic origin, and appears to be the vent region that supplied lavas both northward to Oceanus Procellarum and southward to the Humorum basin. The approach used involves photogeologic interpretation of surface features and mapping of mare units to derive a regional stratigraphic sequence. The sequence of mare volcanism provides insight into the complex emplacement of lunar lavas and the general volcanic history of the moon.

Greeley, R.↗
NASA NTRS1992

Geochemistry of Precambrian carbonates. V - Late Paleoproterozoic seawater

A study of mineralogy, chemistry, and isotopic composition of the Coronation Supergroup (about 1.9 Ga, NWT), Canada, and the McArthur Group (about 1.65 NT), Australia, is reported in order to obtain better constrained data for the first- and second-order variations in the isotopic composition of late Paleoproterozoic (1.9 +/- 0.2 Ga) seawater. Petrologically, both carbonate sequences are mostly dolostones. The McArthur population contains more abundant textural features that attest to the former presence of sulfates and halite, and the facies investigated represent ancient equivalents of modern evaporitic sabkhas and lacustrine playa lakes. It is suggested that dolomitization was an early diagenetic event and that the O-18 depletion of the Archean to late Paleoproterozoic carbonates is not an artifact of postdepositional alteration.

Veizer, Jan↗
NASA NTRS1993

Comparison of kinetic models for atom recombination on high-temperature reusable surface insulation

Five kinetic models are compared for their ability to predict recombination coefficients for oxygen and nitrogen atoms over high-temperature reusable surface insulation (HRSI). Four of the models are derived using Rideal-Eley or Langmuir-Hinshelwood catalytic mechanisms to describe the reaction sequence. The fifth model is an empirical expression that offers certain features unattainable through mechanistic description. The results showed that a four-parameter model, with temperature as the only variable, works best with data currently available. The model describes recombination coefficients for oxygen and nitrogen atoms for temperatures from 300 to 1800 K. Kinetic models, with atom concentrations, demonstrate the influence of atom concentration on recombination coefficients. These models can be used for the prediction of heating rates due to catalytic recombination during re-entry or aerobraking maneuvers. The work further demonstrates a requirement for more recombination experiments in the temperature ranges of 300-1000 K, and 1500-1850 K, with deliberate concentration variation to verify model requirements.

Willey, Ronald J.↗
NASA NTRS1994

Impact basins in Southern Daedalia, Mars: Evidence for clustered impactors?

The distribution of ancient massifs and old cratered terrain in the southern Daedalia region indicate the presence of at least two and probably three impact basins of large size. One of these is located near where Craddock et al. placed their center for the Daedalia Basin, but it has very different ring diameters. These basins have rings exceeding 1000 km diameter and overlap significantly with centers separated by 500 to 600 km at nearly identical latitudes of -26 to -29 deg. The smaller westernmost basin appears slightly better preserved, but there is little evidence for obvious superposition that might imply a temporal sequence. Recognizing the improbability of random impacts producing aligned, nearly contemporaneous features, we suggest these basins may have resulted from clustered impactors.

Frey, Herbert↗
NASA NTRS2003

RSRM Case Acceptance and Refurbishment Requirements

The RSRM (Reuseable Solid Rocket Motor) Program has been developed and implemented to support manned flight space travel. The Space Shuttle Vehicle utilizes two SRBs (Solid Rocket Boosters) to assist during the launch sequence and achieve the predefined orbit and mission objectives. A critical feature of this program involves post- flight SRB retrieval, disassembly and reuse of case structural components to manufacture future RSRM motors. To ensure these components can be safely reused, inspection criteria based on dimensional, structural and fracture requirements, has been established in the form of Engineering specifications and drawings. These criteria originated from actual hardware testing (both subscale and full scale) coupled with conventional Engineering hand calculations and computerized Finite Element Analyses (FEA). The intent of this paper is to provide an overview of the RSRM Case component refurbishment requirements and the associated case hardware inspection and evaluation processes that has been established to satisfy these requirements. Many of these processes have been recently upgraded to comply with environmental regulations, obsolescence concerns and technological advancements. Qualification of these process changes has been closely monitored and documented through test plans and reports.

Brinkerhoff, Gary Z.↗
NASA NTRS2021

Convex Optimization Guidance for Precision Landing on Titan

Precision landing is an anticipated technology for future interplanetary missions. Autonomous spacecraft Entry, Descent and Landing (EDL) on the surface of a planetary body with a degree of precision in the order of meters is highly challenging. In this paper, a successive convexification guidance algorithm is utilized to simulate autonomous precision landing sequences on Saturn’s moon Titan. Due to its unique geophysical features, studying the science of matter within Titan’s atmosphere and beneath its surface is one of NASA’s most important planetary science objectives. As part of the Space Exploration Technology Directorate, a parafoil is proposed for landing on Titan due to its cost effectiveness, ease of deployment, low mass compared to the prospective payload and capabilities of precise autonomous delivery. This paper focuses on path optimization and guidance law development for high-fidelity dynamics parafoil tuning in the dense and adverse wind atmosphere of Titan, defined as a nonlinear and nonconvex optimal control problem. The powerful successive convexification method is used to solve the problem accordingly. The algorithm is designed such that the converged solution adheres to the nonlinear dynamics and kinematics in accordance with the original formulation, while respecting the state and control constraints. The six-degree-of-freedom (6DoF) simulations results show that this robust method is suitable for autonomous interplanetary applications.

Mooij, Edwin↗
DOE OSTI2025

A conserved viral RNA fold enables nuclease resistance across kingdoms of life

Abstract Viral exoribonuclease-resistant RNA (xrRNA) structures block cellular nucleases to produce subgenomic viral RNAs during infection. High sequence variability among xrRNAs from distantly related viruses raises questions about the shared molecular features that enable these RNAs to withstand the strong unwinding forces of exoribonucleases. Here, we present the first structure of a plant-virus xrRNA in its active conformation and uncover universal principles of xrRNA folding. Comparison with the structure of a human-pathogenic flavivirus xrRNA reveals that both share a core structural motif—a protective ring encircling the RNA’s 5′ end—despite lacking sequence similarity. Disrupting this core motif through targeted mutagenesis eliminates exoribonuclease-resistance and attenuates viral infection. We identify hundreds of related structures across multiple virus families, supporting the conservation of this mechanism. Our study demonstrates how distantly related RNA viruses have converged on a common structural strategy to inhibit cellular nucleases, with a universal ring topology as the defining feature of viral xrRNAs.

Biochemistry & Molecular Biology↗
NASA NTRS1991

Hierarchic models for laminated plates

Structural plates and shells are three-dimensional bodies, one dimension of which happens to be much smaller than the other two. Thus, the quality of a plate or shell model must be judged on the basis of how well its exact solution approximates the corresponding three-dimensional problem. Of course, the exact solution depends not only on the choice of the model but also on the topology, material properties, loading and constraints. The desired degree of approximation depends on the analyst's goals in performing the analysis. For these reasons models have to be chosen adaptively. Hierarchic sequences of models make adaptive selection of the model which is best suited for the purposes of a particular analysis possible. The principles governing the formulation of hierarchic models for laminated plates are presented. The essential features of the hierarchic models described models are: (1) the exact solutions corresponding to the hierarchic sequence of models converge to the exact solution of the corresponding problem of elasticity for a fixed laminate thickness; and (2) the exact solution of each model converges to the same limit as the exact solution of the corresponding problem of elasticity with respect to the laminate thickness approaching zero. The formulation is based on one parameter (beta) which characterizes the hierarchic sequence of models, and a set of constants whose influence was assessed by a numerical sensitivity study. The recommended selection of these constants results in the number of fields increasing by three for each increment in the power of beta. Numerical examples analyzed with the proposed sequence of models are included and good correlation with the reference solutions was found. Results were obtained for laminated strips (plates in cylindrical bending) and for square and rectangular plates with uniform loading and with homogeneous boundary conditions. Cross-ply and angle-ply laminates were evaluated and the results compared with those of MSC/PROBE. Hierarchic models make the computation of any engineering data possible to an arbitrary level of precision within the framework of the theory of elasticity.

Actis, Ricardo Luis↗
DOE OSTI2024

Energy Saving Estimation of ASHRAE Guideline 36 Supervisory Setpoint Reset Controls in a Commercial Large Office Building

Designing, commissioning, and retrofitting HVAC control systems for energy efficiency is crucial, but the use of ad-hoc control sequences by designers and contractors, based on scattered information, results in diverse and sub-optimal sequences. ASHRAE Guideline 36 (G36) addresses the challenge by providing standardized, rule-based HVAC control sequences that prioritize energy efficiency. However, there is limited evaluation of their energy performance at the building level, with only a few studies primarily focused on HVAC airside systems in small-to-medium-sized commercial buildings. In this study, the energy performance of ASHRAE Guideline 36 control sequences was assessed using a large office building emulator in Chicago. The emulator features a central plant system with multiple chillers and boilers as well as multiple variable air volume (VAV) systems with terminal reheat. To achieve a high-fidelity representation, we developed a Spawn-of-EnergyPlus-based model for the large office building, maintaining the DOE prototype large office building setup but substituting the HVAC system with its Modelica counterpart. This substitution ensures that the building thermal load, HVAC system's dynamics, and detailed control sequences are all accurately represented. The study involved evaluating and implementing control strategies outlined in ASHRAE Guideline 36-2021 to replace conventional controls. These strategies include the demand-based supply air temperature and duct static pressure setpoint reset and the request logic for demand-based reset of chilled/hot water supply temperature setpoints and pipe static pressure setpoints. Energy performance was evaluated under various load conditions, including cooling, heating, and transitional seasons, both for individual control strategies and in combination. The results indicate that the collective control strategies retrofit yield greater energy savings than the sum of individual strategies, highlighting the synergistic benefits of incorporating both airside and plant-side control retrofits. Additionally, energy savings of up to 41% in the heating season, 18% in the shoulder season, and 20 % in the cooling season were observed compared to baseline control while maintaining the thermal comfort level.

ASHRAE Guideline 36, Commercial buildings, Control↗
NASA NTRS1988

A fault injection experiment using the AIRLAB Diagnostic Emulation Facility

The preparation for, conduct of, and results of a simulation based fault injection experiment conducted using the AIRLAB Diagnostic Emulation facilities is described. An objective of this experiment was to determine the effectiveness of the diagnostic self-test sequences used to uncover latent faults in a logic network providing the key fault tolerance features for a flight control computer. Another objective was to develop methods, tools, and techniques for conducting the experiment. More than 1600 faults were injected into a logic gate level model of the Data Communicator/Interstage (C/I). For each fault injected, diagnostic self-test sequences consisting of over 300 test vectors were supplied to the C/I model as inputs. For each test vector within a test sequence, the outputs from the C/I model were compared to the outputs of a fault free C/I. If the outputs differed, the fault was considered detectable for the given test vector. These results were then analyzed to determine the effectiveness of some test sequences. The results established coverage of selt-test diagnostics, identified areas in the C/I logic where the tests did not locate faults, and suggest fault latency reduction opportunities.

Baker, Robert↗
DOE OSTI2019

Developing a High-Quality Linkage Map for the Atlantic Killifish Fundulus heteroclitus

Killifish (Fundulus heteroclitus) are widely distributed among different aquatic environments where they demonstrate an impressive range of highly-plastic and locally adaptive phenotypes. High-throughput sequencing has begun to unravel the mechanisms and evolutionary history of these interesting features by establishing relationships in the genotype-phenotype map. However, some genotype-phenotype analyses require a higher order of contiguity than what initial scaffolded (fragmented genome assembly where contigs have been assemble into scaffolds) genome assemblies can provide. Here, we used 5,685 high-quality RAD-Seq markers from a single mapping family to order 84% of the scaffolded genome assembly to 24 chromosomes. This serves to: 1) expand the killifish genomic toolkit, 2) estimate genome-wide recombination rates, and 3) compare genome synteny to humans and other fishes. After initially building our map, we found that the selection of thresholds for sequence data filtration highly impacted scaffold placement in the map. We outline each step of the approach that dramatically improved our map to help guide others toward more effective linkage mapping for genome assembly. Our final map supports strong conservation of genomic synteny among closely related fish species and reveals previously described chromosomal rearrangements between more distantly related clades. However, we also commonly found minor scaffold misorientations in F. heteroclitus and in other assemblies, suggesting that further mapping (such as optical mapping) is necessary for finer scale resolution of genome structure. Lastly, we discuss the problems that would be expected from misoriented/unplaced scaffolds and stress the importance of a quality mapped genome as a key feature for further investigating population and comparative genomic questions with F. heteroclitus and other taxa.

Genetics & Heredity↗
NASA NTRS1991

Archaebacterial rhodopsin sequences: Implications for evolution

It was proposed over 10 years ago that the archaebacteria represent a separate kingdom which diverged very early from the eubacteria and eukaryotes. It follows that investigations of archaebacterial characteristics might reveal features of early evolution. So far, two genes, one for bacteriorhodopsin and another for halorhodopsin, both from Halobacterium halobium, have been sequenced. We cloned and sequenced the gene coding for the polypeptide of another one of these rhodopsins, a halorhodopsin in Natronobacterium pharaonis. Peptide sequencing of cyanogen bromide fragments, and immuno-reactions of the protein and synthetic peptides derived from the C-terminal gene sequence, confirmed that the open reading frame was the structural gene for the pharaonis halorhodopsin polypeptide. The flanking DNA sequences of this gene, as well as those of other bacterial rhodopsins, were compared to previously proposed archaebacterial consensus sequences. In pairwise comparisons of the open reading frame with DNA sequences for bacterio-opsin and halo-opsin from Halobacterium halobium, silent divergences were calculated. These indicate very considerable evolutionary distance between each pair of genes, even in the dame organism. In spite of this, three protein sequences show extensive similarities, indicating strong selective pressures.

Lanyi, J. K.↗