SEARCH · Search NASA
Results for “Association study”
Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.
Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.
The Plasma Levels and Polymorphisms of Vitronectin Predict Radiation Pneumonitis in Patients With Lung Cancer Receiving Thoracic Radiation Therapy
Our previous findings have identified vitronectin (VTN) as a potential biomarker for radiation pneumonitis (RP) through proteomics and molecular mechanism studies. In a recent study, we further explored associations of plasma level and single nucleotide polymorphisms of VTN with the risk of RP in patients with lung cancer receiving radiation therapy.
Structure, dynamics, and redox reactivity of an all-purpose flavodoxin
The flavodoxin of Rhodopseudomonas palustris CGA009 (Rp9Fld) supplies highly reducing equivalents to crucial en- zymes such as hydrogenase, especially when the organism is iron-restricted. By acquiring those electrons from photodriven electron flow via the bifurcating electron transfer flavoprotein, Rp9Fld provides solar power to vital metabolic processes. To understand Rp9Fld’s ability to work with diverse partners, we solved its crystal structure. We observed the canonical fla- vodoxin (Fld) fold and features common to other long-chain Flds but not all the surface loops thought to recognize part- ner proteins. Moreover, some of the loops display alternative structures and dynamics. To advance studies of protein– protein associations and conformational consequences, we assigned the 19F NMR signals of all five tyrosines (Tyrs). Our electrochemical measurements show that incorporation of 3- 19 F-Tyr in place of Tyr has only a modest effect on Rp9Fld’s redox properties even though Tyrs flank the flavin on both sides. Meanwhile, the 19 F probes demonstrate the expected paramagnetic effect, with signals from nearby Tyrs becoming broadened beyond detection when the flavin semiquinone is formed. However, the temperature dependencies of chemical shifts and linewidths reveal dynamics affecting loops close to the flavin and regions that bind to partners in a variety of systems. These coincide with patterns of amino acid type conservation but not retention of specific residues, arguing against detailed specificity with respect to partners. We pro- pose that the loops surrounding the flavin adopt altered con- formations upon binding to partners and may even participate actively in electron transfer.
Production of Λ and $K^{0}_{S}$ in jets in p–Pb collisions at $\sqrt{s_{NN}}$ = 5.02 TeV and pp collisions at $\sqrt{s}$ =7 TeV
The production of Λ baryons and $K^{0}_{S}$ mesons (V 0 particles) was measured in p–Pb collisions at $\sqrt{s_{NN}}$ = 5.02 TeV and pp collisions at $\sqrt{s}$ = 7 TeV with ALICE at the LHC. The production of these strange particles is studied separately for particles associated with hard scatterings and the underlying event to shed light on the baryon-to-meson ratio enhancement observed at intermediate transverse momentum (p T ) in high multiplicity pp and p–Pb collisions. Hard scatterings are selected on an event-by-event basis with jets reconstructed with the anti-k T algorithm using charged particles. The production of strange particles associated with jets $p^{ch}_{T,}$ jet > 10 and $p^{ch}_{T,}$ jet > 20 GeV/c in p–Pb collisions, and with jet $p^{ch}_{T,}$ jet > 10 GeV/c in pp collisions is reported as a function of p T . Its dependence on angular distance from the jet axis, R(V 0 , jet), for jets with $p^{ch}_{T,}$ jet > 10 GeV/c in p–Pb collisions is reported as well. The p T -differential production spectra of strange particles associated with jets are found to be harder compared to that in the underlying event and both differ from the inclusive measurements. In events containing a jet, the density of the V 0 particles in the underlying event is found to be larger than the density in the minimum bias events. The Λ/$K^{0}_{S}$ ratio associated with jets in p–Pb collisions is consistent with the ratio in pp collisions and follows the expectation of jets fragmenting in vacuum. On the other hand, this ratio within jets is consistently lower than the one obtained in the underlying event and it does not show the characteristic enhancement of baryons at intermediate p T often referred to as “baryon anomaly” in the inclusive measurements.
How can an ecosystem approach support integrated management of marine renewable energy? An initial assessment from an environmental point of view
With the increasing installation of marine renewable energy (MRE) devices in areas already subject to multiple anthropogenic activities and environmental changes, it is necessary to develop tools and methods for the integrated management of marine ecosystems. The ecosystem approach is a holistic environmental management method that considers all components of an ecosystem. The ecosystem approach has demonstrated utility in the application to various anthropogenic activities and is relevant for consideration within the context of MRE. Indeed, many of the effects observed on marine ecosystems from those other activities are also applicable to MRE development. This review is an initial assessment where we summarize the potential effects of MRE development on marine ecosystems and propose schematic frameworks for applying the ecosystem approach to MRE. We also provide a non-exhaustive list of commonly used models pertinent to the ecosystem approach and associated with several reference studies. An outline of core questions that can currently be answered using available modeling tools central to the ecosystem approach is provided, along with recommendations for the application of this approach to the MRE context. Further, we identify key knowledge gaps and areas that require additional investigation for meaningful application of the ecosystem approach to MRE development. Our recommendations mainly concern the current limitations of applying the ecosystem approach to concrete cases, such as consolidating knowledge of the effects of MRE on the local environment, the need to obtain fine-scale data, considering effects at different spatiotemporal scales, and, finally, the need for an interdisciplinary vision.
NASICON Na 3 V 2 (PO 4 ) 3 Enables Quasi-Two-Stage Na + and Zn 2+ Intercalation for Multivalent Zinc Batteries
Identifying positive electrode materials capable of reversible multivalent electrochemistry in electrolytes containing divalent ions such as Mg 2+ , Ca 2+ , and Zn 2+ at high operating potentials remains an ongoing challenge in “beyond lithium-ion” research. In this paper, we explore the Zn 2+ charge-storage mechanism of a vanadium-based Na + superionic conductor (NASICON), Na 3 V 2 (PO 4 ) 3 . By using X-ray synchrotron techniques to unravel potential-dependent structure–property relationships, we ascribe the reversible electrochemical behavior of Na 3 V 2 (PO 4 ) 3 to a quasi-two-stage intercalation process that involves both Na+ and Zn 2+ . Initial charging of Na 3 V 2 (PO 4 ) 3 leads to a Na + -extracted phase corresponding to Na 3 V 2 (PO 4 ) 3 , whereas subsequent discharge results predominantly in Na + intercalation followed by Zn 2+ intercalation. Operando X-ray diffraction of Na 3 V 2 (PO 4 ) 3 was used to study the phase changes associated with the first charge/discharge process, and ex situ measurements were used to precisely link the changes in the crystal structure to a quasi-two-stage intercalation of Na + and Zn 2+ . The corresponding changes in the V-oxidation state, V-O coordination, and the presence of Zn 2+ were confirmed by X-ray absorption spectroscopy. The results of this work present a comprehensive understanding of the charge-storage properties for a well-established NASICON structure that confers both the high capacity (~100 mA h g -1 ) and high potential (1.35 and 1.1 V vs Zn/Zn 2+ ).
Computational Analysis of the Energetic Stability of High-Entropy Structures of a Prototypical Lanthanide-Based Metal–Organic Framework
High-entropy materials are characterized by their complex compositions, typically comprising five or more elements in near-equiatomic proportions. Applying this concept to metal ions in metal−organic frameworks (MOFs) has paved the way for exploring a new class of high-entropy MOFs. While the compositional strategy of high-entropy materials leverages configurational entropy to aid thermodynamic stability, it also poses significant analytical challenges due to the vast compositional landscape and diverse phases that these materials can adopt. We present a computational study of several complexities associated with selecting potential high-entropy versions of a prototype lanthanidebased MOF. We compute the energetics of metal mixing of these heterometallic MOFs using density functional theory (DFT) and machine learning interatomic potential (MLIP) methods. The use of MLIP methods allows a systematic exploration of the convex hull of thermodynamically stable MOF structures containing up to 5 distinct metals.
Exploring Mission Design for Imaging Spectroscopy Retrievals for Land and Aquatic Ecosystems
The retrieval algorithms used for optical remote sensing satellite data to estimate Earth's geophysical properties have specific requirements for spatial resolution, temporal revisit, spectral range and resolution, and instrument signal-to-noise ratio (SNR) performance to meet biogeoscience objectives. Studies to estimate surface properties from hyperspectral data use a range of algorithms sensitive to various sources of spectroscopic uncertainty, which are in turn influenced by mission architecture choices. Retrieval algorithms vary across scientific fields and may be more or less sensitive to mission architecture choices that affect spectral, spatial, or temporal resolutions and spectrometer SNR. We used representative remote sensing algorithms across terrestrial and aquatic study domains to inform aspects of mission design that are most important for impacting accuracy in each scientific area. We simulated the propagation of uncertainties in the retrieval process including the effects of different instrument configuration choices. We found that retrieval accuracy and information content degrade consistently at >10 nm spectral resolution, >30 m spatial resolution, and >8-day revisit. In these studies, the noise reduction associated with lower spatial resolution improved accuracy vis à vis high spatial resolution measurements. The interplay between spatial resolution, temporal revisit, and SNR can be quantitatively assessed for imaging spectroscopy missions and used to identify key components of algorithm performance and mission observing criteria.
Selective NMR observation of the SEI–metal interface by dynamic nuclear polarisation from lithium metal
While lithium metal represents the ultimate high-energy-density battery anode material, its use is limited by dendrite formation and associated safety risks, motivating studies of the solid–electrolyte interphase layer that forms on the lithium, which is key in controlling lithium metal deposition. Dynamic nuclear polarisation enhanced NMR can provide important structural information; however, typical exogenous dynamic nuclear polarisation experiments, in which organic radicals are added to the sample, require cryogenic sample cooling and are not selective for the interface between the metal and the solid–electrolyte interphase. Here we instead exploit the conduction electrons of lithium metal to achieve an order of magnitude hyperpolarisation at room temperature. We enhance the 7 Li, 1 H and 19 F NMR spectra of solid–electrolyte interphase species selectively, revealing their chemical nature and spatial distribution. These experiments pave the way for more ambitious room temperature in situ dynamic nuclear polarisation studies of batteries and the selective enhancement of metal–solid interfaces in a wider range of systems.
Salivary microbiome composition changes after bariatric surgery
Recent studies show that the salivary microbiome in subjects with obesity differ from those without obesity, but the mechanism of interaction between the salivary microbiome composition and body weight is unclear. Herein we investigate this relation by analyzing saliva samples from 35 adult patients with obesity undergoing bariatric surgery. Our aim was to describe salivary microbiome changes during body weight loss on an individual-specific level, and to elucidate the effect of bariatric surgery on the salivary microbiome which has not been studied before. Analysis of samples collected before and 1 day after surgery, as well as 3 and 12 months after surgery, showed that the salivary microbiome changed in all study participants, but these changes were heterogeneous. In the majority of participants proportions of Gemella species, Granulicatella elegans, Porphyromonas pasteri, Prevotella nanceiensis and Streptococcus oralis decreased, while Veillonella species, Megasphaera micronuciformis and Prevotella saliva increased. Nevertheless, we found participants deviating from this general trend which suggests that a variety of individual-specific factors influence the salivary microbiome composition more effectively than the body weight dynamics alone. The observed microbiome alternations could be related to dietary changes. Therefore, further studies should focus on association with altered taste preferences and potential oral health consequences.
PDK4-dependent hypercatabolism and lactate production of senescent cells promotes cancer malignancy
Abstract Senescent cells remain metabolically active, but their metabolic landscape and resulting implications remain underexplored. Here, we report upregulation of pyruvate dehydrogenase kinase 4 (PDK4) upon senescence, particularly in some stromal cell lines. Senescent cells display a PDK4-dependent increase in aerobic glycolysis and enhanced lactate production but maintain mitochondrial respiration and redox activity, thus adopting a special form of metabolic reprogramming. Medium from PDK4 + stromal cells promotes the malignancy of recipient cancer cells in vitro, whereas inhibition of PDK4 causes tumor regression in vivo. We find that lactate promotes reactive oxygen species production via NOX1 to drive the senescence-associated secretory phenotype, whereas PDK4 suppression reduces DNA damage severity and restrains the senescence-associated secretory phenotype. In preclinical trials, PDK4 inhibition alleviates physical dysfunction and prevents age-associated frailty. Together, our study confirms the hypercatabolic nature of senescent cells and reveals a metabolic link between cellular senescence, lactate production, and possibly, age-related pathologies, including but not limited to cancer.
Iron transformation mediates phosphate retention across a permafrost thaw gradient
Phosphorus limits primary productivity in many (Sub-)Arctic ecosystems and may constrain biological carbon sequestration. Iron (III) oxides strongly bind phosphate in soils but can dissolve under flooded, reducing conditions induced by permafrost thaw and ground collapse. The ability for iron to regulate phosphate storage and solubility in thawing permafrost landscapes remains unclear. Here, iron-rich sediments containing iron oxides and organic-bound iron were incubated with or without added phosphate in soils along a permafrost thaw gradient to evaluate how iron-phosphate associations respond to thaw-induced redox shifts. Iron oxides partially dissolved and released sorbed phosphate when incubated in soils underlain by degraded permafrost. Iron complexed by organic matter remained stable but provided no phosphate binding capacity. Phosphate addition enhanced iron oxide dissolution and phosphorus concentrations in associated microbial biomass. Our study demonstrates that the capacity for iron oxides to immobilize and retain phosphate in permafrost peatlands decreases with permafrost thaw.
A Gaussian process based surrogate approach for the optimization of cylindrical targets
Simulating direct-drive inertial confinement experiments presents significant computational challenges, both due to the complexity of the codes required for such simulations and the substantial computational expense associated with target design studies. Machine learning models, and in particular, surrogate models, offer a solution by replacing simulation results with a simplified approximation. In this study, we apply surrogate modeling and optimization techniques that are well established in the existing literature to one-dimensional simulation data of a new cylindrical target design containing deuterium–tritium fuel. These models predict yields without the need for expensive simulations. We find that Bayesian optimization with Gaussian process surrogates enhances sampling efficiency in low-dimensional design spaces but becomes less efficient as dimensionality increases. Nonetheless, optimization routines within two-dimensional and five-dimensional design spaces can identify designs that maximize yield, while also aligning with established physical intuition. Optimization routines, which ignore constraints on hydrodynamic instability growth, are shown to lead to unstable designs in 2D, resulting in yield loss. However, routines that utilize 1D simulations and impose constraints on the in-flight aspect ratio converge on novel cylindrical target designs that are stable against hydrodynamic instability growth in 2D and achieve high yield.
Protocols and methodologies for acquiring and analyzing critical-current versus longitudinal-strain data in Bi 2 Sr 2 CaCu 2 O 8+x wires
Abstract In the literature on Bi 2 Sr 2 CaCu 2 O 8+ x (Bi-2212) superconducting wires, it is evident that measurement protocols for transport critical-current I c versus longitudinal strain ϵ and definitions of the so-called ‘strain limit’ are generally dissimilar. Yet, values obtained for the ‘strain limit’ are frequently assimilated to being those of the irreversible strain limit ϵ irr , regardless of the I c degradation-criterion used to define it. In effect, ϵ irr should correspond specifically to the I c ( ϵ ) irreversibility onset , where crack formation in Bi-2212 filaments presumably starts. Because I c ( ϵ ) degradation remains progressive over a fairly wide strain range beyond ϵ irr , the different I c degradation-criteria in use do not yield to the same result and, thus, are not equivalent from metrology perspective. Indeed, in studying densified samples of a modern Bi-2212 round wire, we found ϵ irr ≈ 0.4% and ϵ 5% ≈ 0.6% ( ϵ 5% being the strain where I c degrades by 5%). In this paper, we outline and suggest I c ( ϵ )-measurement protocols and data-analysis methodologies in the hope to converge the various approaches taken for studying Bi-2212 strain properties and, thus, remove related result discrepancies. A unified approach would enable more objective data comparisons among laboratories and among different Bi-2212 conductors. It would pave the way for more rigorous studies of effects potentially associated with wire design, powder, heat treatments, and other such parameters on the conductor’s strain properties.
Formation of asymmetric arms in barred galaxies
We establish a dynamical mechanism to explain the origin of the asymmetry between the arms observed in some barred disc galaxies, where one of the two arms emanating from the bar ends is very well defined, while the second one displays a ragged structure, extending between its ridge and the bar. To this purpose, we study the invariant manifolds associated with the Lyapunov periodic orbits around the unstable equilibrium points at the ends of the bar. Matter from the galaxy centre is transported along these manifolds to the periphery, forming this way the spiral arms that emanate from the bar ends. If the mass distribution in the galaxy centre is not homogeneous, because of an asymmetric bar with one side stronger than the other, or because of a non-centred bulge, the dynamics about the two unstable Lagrange points at the ends of the bar will not be symmetric as well. One of their invariant manifolds becomes more extended than the other, enclosing a smaller section and the escaping orbits on it are fewer and dispersed in a wider region. The result is a weaker arm and more ragged than the one at the other end of the bar.
Metabolic patterns in Septoria canker resistant and susceptible Populus trichocarpa genotypes 24 hours post-inoculation
Sphaerulina musiva is an economically and ecologically important fungal pathogen that causes Septoria stem canker and leaf spot disease of Populus species. Here, to bridge the gap between genetic markers and structural barriers previously found to be linked to Septoria (Sphaerulina musiva) canker disease resistance in poplar, we employed hydrophilic interaction liquid chromatography (HILIC) and tandem mass spectrometry (MS/MS) to identify and quantify metabolites involved with signaling and cell wall re-modelling. Fluctuations in signaling molecules, organic acids, amino acids, sterols, phenolics, and saccharides in resistant and susceptible Populus trichocarpa inoculated with Sphaerulina musiva, were observed. The patterns of 222 metabolites in the resistant host implicates systemic acquired resistance (SAR), cell wall apposition, and lignin deposition as modes of resistance to this hemibiotrophic pathogen. This pattern is consistent with the expected response to the biotrophic phase of S. musiva colonization during the first 24 hours post-inoculation. The fungal pathogen metabolized key regulatory signals of SAR, other phenolics, and precursors of lignin biosynthesis which were depleted in the susceptible host. This is the first study to characterize metabolites associated with the response to initial colonization by S. musiva between resistant and susceptible hosts.
Mechanical form factors and densities of nonrelativistic fermions
The hadron physics community has been actively debating the interpretation of so-called mechanical properties of hadrons. Nonrelativistic quantum-mechanical systems like the hydrogen atom have been appealed to in these debates as analogies. Since such appeals are likely to continue, it is important to have Galilei-covariant expressions for matrix elements of the energy-momentum tensor. In this work, I obtain Galilei-covariant breakdowns of such matrix elements into mechanical form factors, with a special focus on spin-half states. I additionally study the spatial densities associated with these form factors, using the pilot wave interpretation to guide their breakdown into contributions from internal structure and from quantum-mechanical effects such as wave packet dispersion. For completeness, I also obtain nonrelativistic Breit frame densities.
Rotational symmetry protected edge and corner states in Abelian topological phases
Spatial symmetries can enrich the topological classification of interacting quantum matter and endow systems with non-trivial strong topological invariants (protected by internal symmetries) with additional "weak" topological indices. In this paper, we study the edge physics of systems with a non-trivial shift invariant, which is protected by either a continuous $\text{U}(1)_r$ or discrete $\text{C}_n$ rotation symmetry, along with internal $\text{U}(1)_c$ charge conservation. Specifically, we construct an interface between two systems which have the same Chern number but are distinguished by their Wen-Zee shift and, through analytic arguments supported by numerics, show that the interface hosts counter-propagating gapless edge modes which cannot be gapped by arbitrary local symmetry-preserving perturbations. Using the Chern-Simons field theory description of two-dimensional Abelian topological orders, we then prove sufficient conditions for continuous rotation symmetry protected gapless edge states using two complementary approaches. One relies on the algebraic Lagrangian sub-algebra framework for gapped boundaries while the other uses a more physical flux insertion argument. For the case of discrete rotation symmetries, we extend the field theory approach to show the presence of fractional corner charges for Abelian topological orders with gappable edges, and compute them in the case where the Abelian topological order is placed on the two-dimensional surface of a Platonic solid. Finally, our work paves the way for studying the edge physics associated with spatial symmetries in symmetry enriched topological phases.