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NASA NTRS2002

Self-Consistent Magnetosphere-Ionosphere Coupling: Theoretical Studies

A self-consistent ring current (RC) model has been developed that couples electron and ion magnetospheric dynamics with the calculation of the electric field. Two new features were taken into account in order to close the self-consistent magnetosphere- ionosphere coupling loop. First, in addition to the RC ions, we solve an electron kinetic equation in our model. Second, using the relation of Galand and Richmond [2001], we calculate the height integrated ionospheric conductances as a function of the precipitated high energy magnetospheric electrons and ions that are produced by our code. To validate the results of our model we simulate the magnetic storm of May 2, 1986, a storm that has has been comprehensively studied, and compare our results with different theoretical approaches. The self-consistent inclusion of the hot electrons and, their effect on the conductance results in deeper penetration of the magnetospheric electric field. In addition, a slight westward rotation of the potential pattern (compared to previous self-consistent results) is evident in the inner magnetosphere. This changes the hot plasma distribution, especially by allowing increased access of plasma sheet ions and electrons to low L shells.

Khazanov, G. V.↗

NASA NTRS2017

A CFD Case Study of a Fan Stage with Split Flow Path Subject to Total Pressure Distortion Inflow

This report is the documentation of the work performed under the Hypersonic Project of the NASA's Fundamental Aeronautics Program. It was funded through Task Number NNC10E444T under GESS-2 Contract NNC06BA07B. The objective of the task is to develop advanced computational tools for the simulation of multi-stage turbomachinery in support of aeropropulsion. This includes work elements in extending the TURBO code and validating the multi-stage URANS (Unsteady Reynolds Averaged Navier Stokes) simulation results with the experimental data. The unsteady CFD (Computation Fluid Dynamics) calculations were performed in full wheel mode with and without screen generated total pressure distortion at the computational inflow boundary, as well as in single passage phase lag mode for uniform inflow. The experimental data were provided by NASA from the single stage RTA (Revolutionary Turbine Accelerator) fan test program.Significant non-uniform flow condition at the fan-face of the aeropropulsion system is frequentlyencountered in many of the advanced aerospace vehicles. These propulsion systems can be eithera podded or an embedded design employed in HWB (Hybrid Wing Body) airframe concept. It isalso a topic of interest in military applications, in which advanced air vehicles have already deployedsome form of embedded propulsion systems in their design because of the requirementsof compact and low observable inlets. Even in the conventional airframe/engine design, the fancould operate under such condition when the air vehicle is undergoing rapid maneuvering action.It is believed that a better understanding of the fan’s aerodynamic and aeromechanical responseto this type of operating condition or off design operation would be beneficial to designing distortiontolerant blades for improved engine operability.The objective for this research is to assess the capability of turbomachinery code as an analysistool in understanding the effects and evaluating the impact of flow distortion on the aerodynamicand aeromechanical performance of the fan in advanced propulsion systems. Results from thetesting of an advanced fan stage released by NASA are available and will be used here for CFDcode validation. The experiment was performed at NASA’s high speed compressor facility aspart of the RTA (Revolutionary Turbine Accelerator) demonstration project, a joint effort ofNASA Glenn Research Center and GE Aircraft Engines in developing an advanced Mach 4TBCC (Turbine Based Combined Cycle) turbofan/ramjet engine for access to space. Part of thetest was to assess the aerodynamic performance and operability of the fan stage under nonuniforminflow condition. Various flow distortion patterns were created at the fan-face by manipulatingsets of screens placed upstream of the wind tunnel. Measurements at the fan-face willprovide the necessary distortion flow information as the inflow boundary condition for the CFDin a full wheel simulation. Therefore the purpose of this work is to demonstrate the NASA supportedmulti-stage turbomachinery code, TURBO [1-5], in the aerodynamic performance analysisof a modern fan design operating under off design condition, and in particular to validate theCFD results with the RTA fan test data.A brief description of the RTA fan rig configuration is given in the next section, explaining onhow flow distortion were measured in the test and constructed for the CFD at the fan-face. It isfollowed by a section summarizing previous CFD work performed at NASA relevant to the currentfan configuration. A short description of the TURBO code is given next, followed by detailsin the computational model of the fan rig, the required computing resources, and the numericalprocedure for the simulations. The CFD results are presented in the discussion section and finallyconcluding remarks are summarized.

Fan Stage↗

NASA NTRS2022

Improved representation of agricultural land use and crop management for large-scale hydrological impact simulation in Africa using SWAT+

To date, most regional and global hydrological models either ignore the representation of cropland or consider crop cultivation in a simplistic way or in abstract terms without any management practices. Yet, the water balance of cultivated areas is strongly influenced by applied management practices (e.g. planting, irrigation, fertilization, and harvesting). The SWAT+ (Soil and Water Assessment Tool) model represents agricultural land by default in a generic way, where the start of the cropping season is driven by accumulated heat units. However, this approach does not work for tropical and subtropical regions such as sub-Saharan Africa, where crop growth dynamics are mainly controlled by rainfall rather than temperature. In this study, we present an approach on how to incorporate crop phenology using decision tables and global datasets of rainfed and irrigated croplands with the associated cropping calendar and fertilizer applications in a regional SWAT+ model for northeastern Africa. We evaluate the influence of the crop phenology representation on simulations of leaf area index (LAI) and evapotranspiration (ET) using LAI remote sensing data from Copernicus Global Land Service (CGLS) and WaPOR (Water Productivity through Open access of Remotely sensed derived data) ET data, respectively. Results show that a representation of crop phenology using global datasets leads to improved temporal patterns of LAI and ET simulations, especially for regions with a single cropping cycle. However, for regions with multiple cropping seasons, global phenology datasets need to be complemented with local data or remote sensing data to capture additional cropping seasons. In addition, the improvement of the cropping season also helps to improve soil erosion estimates, as the timing of crop cover controls erosion rates in the model. With more realistic growing seasons, soil erosion is largely reduced for most agricultural hydrologic response units (HRUs), which can be considered as a move towards substantial improvements over previous estimates. We conclude that regional and global hydrological models can benefit from improved representations of crop phenology and the associated management practices. Future work regarding the incorporation of multiple cropping seasons in global phenology data is needed to better represent cropping cycles in areas where they occur using regional to global hydrological models.

crop phenology↗

NASA NTRS2012

QuakeSim 2.0

QuakeSim 2.0 improves understanding of earthquake processes by providing modeling tools and integrating model applications and various heterogeneous data sources within a Web services environment. QuakeSim is a multisource, synergistic, data-intensive environment for modeling the behavior of earthquake faults individually, and as part of complex interacting systems. Remotely sensed geodetic data products may be explored, compared with faults and landscape features, mined by pattern analysis applications, and integrated with models and pattern analysis applications in a rich Web-based and visualization environment. Integration of heterogeneous data products with pattern informatics tools enables efficient development of models. Federated database components and visualization tools allow rapid exploration of large datasets, while pattern informatics enables identification of subtle, but important, features in large data sets. QuakeSim is valuable for earthquake investigations and modeling in its current state, and also serves as a prototype and nucleus for broader systems under development. The framework provides access to physics-based simulation tools that model the earthquake cycle and related crustal deformation. Spaceborne GPS and Inter ferometric Synthetic Aperture (InSAR) data provide information on near-term crustal deformation, while paleoseismic geologic data provide longerterm information on earthquake fault processes. These data sources are integrated into QuakeSim's QuakeTables database system, and are accessible by users or various model applications. UAVSAR repeat pass interferometry data products are added to the QuakeTables database, and are available through a browseable map interface or Representational State Transfer (REST) interfaces. Model applications can retrieve data from Quake Tables, or from third-party GPS velocity data services; alternatively, users can manually input parameters into the models. Pattern analysis of GPS and seismicity data has proved useful for mid-term forecasting of earthquakes, and for detecting subtle changes in crustal deformation. The GPS time series analysis has also proved useful as a data-quality tool, enabling the discovery of station anomalies and data processing and distribution errors. Improved visualization tools enable more efficient data exploration and understanding. Tools provide flexibility to science users for exploring data in new ways through download links, but also facilitate standard, intuitive, and routine uses for science users and end users such as emergency responders.

Donnellan, Andrea↗

DOE OSTI2023

LA100 Equity Strategies. Chapter 12: Distribution Grid Upgrades for Equitable Resilience and Solar, Storage, and Electric Vehicle Access

The LA100 Equity Strategies project integrates community guidance with robust research, modeling, and analysis to identify strategy options that can increase equitable outcomes in Los Angeles' clean energy transition. As Los Angeles transitions toward clean energy, existing distribution grid infrastructure will need to be updated and expanded to support reliable service during routine operations, enable interconnection with distributed energy resources and electrified loads, and provide access to energy-related services during disasters. This chapter focuses on equity in distribution grid upgrades, reliability, and resilience in Los Angeles. Specifically, NREL performed grid upgrade and resilience analyses using a detailed model of the distribution grid and income-differentiated household load profiles, electric vehicle (EV) adoption patterns, distributed solar adoption, and grid reliability to explore two key questions to inform how the City of Los Angeles can ensure a resilient and reliable distribution grid for all communities during the clean energy transition: Where can distribution system upgrades can be prioritized to enable equitable access to, and adoption of, clean energy technologies and how can Los Angeles provide equitable, resilient access to electricity-related services (e.g., health care, food) during disaster events like earthquakes and flooding? The electric distribution system is the "last mile" of the grid, linking the multistate bulk power system with customers; new loads, including EVs; and distributed energy resources, such as customer and community solar and storage. This analysis focuses on the 4.8-kilovolt (kV) system, including service transformers that represent the utility-side of the grid connection for most residential customers. Chapter 17 looks at the customer-side of the grid connection with a focus on electric panel upgrade needs. The transition toward clean energy can put additional stress on the distribution system from distributed energy resources and electrification - especially EVs and increased use of electricity for heating, cooling, cooking, and hot water. This stress, measured here as the number of equipment overloads and voltage violations, correlates strongly to grid reliability and therefore is used as a proxy for understanding additional upgrades needed and to help ensure equitable access to electrification and distributed energy resources. NREL also conducted community resilience analysis to examine customer-level access to both electricity and a larger range of services, such as hospitals and grocery stores during a disaster. This analysis explicitly considers equity to understand differences in current resilience and resilience strategies to effectively improve critical services access for all Angelenos. Research was guided by input from the community engagement process, and associated equity strategies are presented in alignment with that guidance.

14 SOLAR ENERGY↗

DOE OSTI2022

The role of B T -dependent flows on W accumulation at the edge of the confined plasma

Abstract Near-separatrix impurity accumulation between the crown and the outer midplane of tokamaks is a common feature in results from codes such as SOLPS-ITER and DIVIMP; however, experimental evidence of accumulation has only recently been obtained and is reported here. The codes find that the poloidal distribution of impurity ions in the scrape-off layer (SOL) depends primarily on toroidal field ( B T )-dependent parallel flow patterns of the background plasma and the parallel ion temperature gradient (∇ ‖ T ion ) force. Experimentally, Mach probes used in L-mode plasmas with favorable (for H-mode access) B T measure fast ( M ∼ 0.3–0.5) inner-target-directed (ITD) background plasma flows at the crown of single-null discharges. This study reports a set of DIVIMP simulations for two similar H-mode discharges from the DIII-D W metal rings campaign differing primarily in B T -direction to assess the effect that fast ITD flows have on the distribution of W ions in the SOL. It is found that for imposed ITD flows of M = 0.3, W ions that otherwise accumulate due to the ∇ ‖ T ion -force are largely flushed out. It is also found that doubling the radial diffusion coefficient from 0.3 to 0.6 m 2 s −1 prevents accumulation due to rapid cross-field transport into the far-SOL, where background plasma flows drain W ions to the divertors. Far-SOL W distributions from DIVIMP are then used to specify input to the impurity transport code 3DLIM, which is used to interpretively model collector probe (CP) deposition patterns measured in the ‘wall-SOL’. It is demonstrated that the deposition patterns are consistent with the DIVIMP predictions of near-SOL accumulation for the unfavorable- B T direction, and little/no accumulation for the favorable- B T direction. The wall-SOL CPs have thus provided the first experimental evidence, albeit indirect, of near-SOL W accumulation—finding it occurs for the unfavorable- B T direction only. For the favorable- B T direction, fast flows can largely prevent accumulation from occurring.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

DOE OSTI2015

Travel Patterns And Characteristics Of Transit Users In New York State

This research is a detailed examination of the travel behaviors and patterns of transit users within New York State (NYS), primarily based on travel data provided by the National Household Travel Survey (NHTS) in 2009 and the associated Add-on sample households purchased by the New York State Department of Transportation (NYSDOT). Other data sources analyzed in this study include: NYS General Transit Feed Specification (GTFS) to assist in analyzing spatial relationships for access to transit and the creation of Transit Shed geographic areas of 1, 2.5, and 5 miles from transit stop locations, LandScan population database to understand transit coverage, and Census Bureau s American Community Survey (ACS) data to examine general transit patterns and trends in NYS over time. The majority of analyses performed in this research aimed at identifying transit trip locations, understanding differences in transit usage by traveler demographics, as well as producing trip/mode-specific summary statistics including travel distance, trip duration, time of trip, and travel purpose of transit trips made by NYS residents, while also analyzing regional differences and unique travel characteristics and patterns. The analysis was divided into two aggregated geographic regions: New York Metropolitan Transportation Council (NYMTC) and NYS minus NYMTC (Rest of NYS). The inclusion of NYMTC in all analysis would likely produce misleading conclusions for other regions in NYS. TRANSIT COVERAGE The NYS transit network has significant coverage in terms of transit stop locations across the state s population. Out of the 19.3 million NYS population in 2011, about 15.3 million (or 79%) resided within the 1-mile transit shed. This NYS population transit coverage increased to 16.9 million (or 88%) when a 2.5-mile transit shed was considered; and raised to 17.7 million (or 92%) when the 5-mile transit shed was applied. KEY FINDINGS Based on 2009 NHTS data, about 40% of NYMTC households used transit as their means of transportation on any typical day; while only 4% of households located elsewhere in NYS did the same. Regardless of geographic regions, 45% of the transit users came from households with income under $40,000, while 20% of transit users were from the top income group of $100,000 plus households. Travel made by NYMTC transit users were nearly twice as likely to be for work trips as compared to their counterpart non-transit users. Transit users in NYS generally made more trips but with shorter distances; they also drove less, which resulted in fewer miles. Furthermore, NYS transit users spent more time on each trip than their counterpart non-transit users. Because of the intensity of transit network services within NYMTC, 88% of the households reside within the 1-mile transit shed. Outside the NYMTC, however, only 54% of the region s households are located within the same distance. Impact to vehicle ownership was clearly evidenced. Nearly all people from zero-vehicle households in NYMTC lived within a 1-mile radius of transit stops. Elsewhere in NYS, 74% of residents from zero-vehicle households resided within the 1-mile transit shed. Close proximity to transit has a significant impact on increasing transit uses. Transit mode share, as a main mode, was higher for NYS residents that lived within the 1-mile transit shed than others. Based on ACS data, over the period from 2005 to 2013, the total number of NYMTC workers increased more than 9%, while transit commuting grew at a higher rate of more than 15% during the same period. REMARKS Note that transit use in areas outside the NYMTC region generally is not common, resulting in a smaller sample size of transit users in the Rest of NYS region. Caution should be exercised for statistics produced based on small sample sizes that tend to be less precise (i.e., with a larger margin of error). Furthermore, standardized transit network data were not available prior to 2005; comparable analyses using 2001 NHTS therefore was not feasible. As a result, this study focused on examining travel behaviors of transit users using 2009 NHTS data only.

33 ADVANCED PROPULSION SYSTEMS↗

DOE OSTI2021

Protecting Websites from Cross-Site Scripting (XSS) Attacks: A Novel Configuration using Pulse Secure © Pulse Connect Secure © and Virtual Web Application Firewall (vWAF)

Cross-site scripting (XSS), one of the most prevalent forms of client-side attacks, is when bad actors attempt to access sensitive information from the backend web server and other systems on the backend network. Some XSS attacks attempt to access client-side sensitive information, such as cookies. Web application firewalls (WAFs) are a first line of defense where common Uniform Resource Locator (URL) patterns are analyzed to detect and block known attacks. This paper describes a novel configuration using the Pulse Secure © Pulse Connect Secure © (PCS © ) Secure Socket Layer Virtual Private Network software and Virtual Web Application Firewall (vWAF) that protects a website from XSS attacks. This paper also presents novel aspects of the configuration that control the redirection of traffic through the vWAF and provide fine-grained behavioral control at the application level while decoupling the PCS and vWAF configurations. The intended audience for this paper comprises system and site administrators who are familiar with standard web server environments. These configuration details might prove useful during the design of a more secure infrastructure.

97 MATHEMATICS AND COMPUTING↗

NASA NTRS1971

Mathematical models of the open magnetosphere - Application to dayside auroras.

Two static mathematical models of the open or Dungey model of the magnetosphere are constructed. The process of construction is similar to that for early closed magnetosphere models, such as the Taylor-Hones model. The first model in fact is simply an addition of an interplanetary field in arbitrary direction to a Taylor-Hones image dipole model. In order to preserve the shape of the magnetosphere at high latitudes, and to partially exclude the exterior field, another model is constructed with the magnetopause approximated by a diamagnetic sphere. We find that there are some interplanetary field lines connected to the earth for all orientations of the interplanetary field other than strictly northward, and that the maximum number of connected field lines occurs with a due southward field. For an average spiral hose angle of the interplanetary field, the dayside neutral point occurs on the magnetopause at about 10 o'clock local time. Dayside auroras, convection patterns, and other phenomena may exhibit symmetry about this local time. For a positive (negative) interplanetary field sector, energetic, anisotropic particle fluxes should have direct access to the northern (southern) polar caps, as is supported by many recent observations.

Forbes, T. G.↗

NASA NTRS2002

Self-Consistent Magnetosphere-Ionosphere Coupling

A self-consistent ring current (RC) model has been developed that couples electron and ion magnetospheric dynamics with the calculation of the electric field. Two new features were taken into account in order to close the self-consistent magnetosphere-ionosphere coupling loop. First, in addition to the RC ions, we have solved an electron kinetic equation in our model. Second, using the relation of Galand and Richmond, we have calculated the height integrated ionospheric conductances as a function of the precipitated high energy magnetospheric electrons and ions that are produced by our model. To validate the results of our model we simulate the magnetic storm of May 2, 1986, a storm that has been comprehensively studied by Fok et al., and have compared our results with different theoretical approaches. The self-consistent inclusion of the hot electrons and their effect on the conductance results in deeper penetration of the magnetospheric electric field. In addition, a slight westward rotation of the potential pattern (compared to previous self-consistent results) is evident in the inner magnetosphere. These effects change the hot plasma distribution, especially by allowing increased access of plasma sheet ions and electrons to low L shells.

Six, N. Frank↗

NASA NTRS2019

Supporting Crew Autonomy in Deep Space Exploration: Preliminary Onboard Capability Requirements and Proposed Research Questions. Technical Report of the Autonomous Crew Operations Technical Interchange Meeting

Communication delays are a critical challenge posed by long duration deep space exploration. Space missions historically have relied on an ever-present Mission Control Center (MCC) to direct operations in near real-time. As unanticipated anomalies that defeat fault detection and resolution systems do arise, the lack of real-time communication will significantly weaken what the MCC support represents: a reliable safety net for the flight crew through its deep and diverse areas of expertise and investigative resources. As a consequence, future space vehicles and habitats need to be equipped with capabilities to support the flight crew to operate with little or no ground support. Considerations must be given to vehicle and mission designs that will fortify the traditionally ground-centered safety net and forge new support systems, when communication delays exist. In August 2018, NASA’s Human Research Program, through its Human Factors and Behavioral Performance Element, convened a Technical Interchange Meeting (TIM) on Autonomous Crew Operations at NASA Ames Research Center. The goal of the meeting was to gather input from NASA centers, industry, academia, and branches of the Department of Defense (DoD) to address how intelligent technologies can be applied to augment onboard capabilities to support crew anomaly response. The TIM featured 24 presentations by 29 speakers and hosted a total of 59 attendees, including 43 from 5 NASA centers (Ames, Johnson, Langley, Marshall, and Jet Propulsion Lab) and 4 from the DoD (3 from Army Research Lab and 1 from Naval Postgraduate School), with remaining attendees from academia (e.g., UC Davis, CMU) and industry (e.g., IBM, Siemens). Discussions were centered around three themes: standards and guidelines, lessons learned in analog environments, and technologies. To help provide a framework for discussion, a concept matrix describing anomaly response processes was created prior to the TIM (Figure 1, page 6). The matrix captures the steps involved (monitoring and detection, diagnosis, solution development and evaluation, solution implementation and verification, resolution documentation) as well as the resources and capabilities required to support these steps (data, knowledge, analysis, synthesis, resource management). A wallpaper size printout of the matrix was utilized at the TIM to solicit attendee inputs along the three themes; the activity garnered 108 submissions of ideas. Overall, what emerged from TIM discussions was a picture of mismatch between crew anomaly response needs and support that can be provided by existing intelligent technologies. The needs are broad, spanning multiple steps and processes/resources, with many of which lacking support from existing technologies, such as knowledge management throughout the steps of problem solving (especially in resolution documentation) and manpower management. The solutions provided by existing intelligent technologies are specific to the steps/processes that they are designed to support and constrained to solving only problems similar to those that have occurred before. What is lacking from technologies is typically made up by humans, specifically their complex critical thinking, creative problem solving, and domain expertise. In the end, the TIM highlighted the pressing need to support responses to onboard anomalies during autonomous crew operations, particularly those that have eluded the system tests, inspection, and other assurance processes. Such anomalies can potentially threaten crew and vehicle safety, as well as significantly impact overall operations with additional workload. These fairly rare events are difficult to anticipate and prepare for, given the state-of-the-art in intelligent technologies. This is true even for anomalies that stem from “unknown knowns”—cases in which there is sufficient external information to characterize the problem but the overall pattern fails to be recognized by the problem solver, or in which the internal knowledge needed to solve a problem is held tacitly and potentially accessible by the problem solver but not articulated. It follows that the ability to tackle anomalies lies not only with the availability of relevant information and knowledge but also their accessibility in times of need. To that end, we propose research questions along the following three broad themes: • How intelligent technologies can help make relevant knowledge and information available? • How intelligent technologies can help make relevant knowledge and information accessible? • How intelligent technologies can help support the crew operating as a team in anomaly response processes?

autonomous crew operations↗

NASA NTRSDate not supplied

Large Scale Transcriptional Analysis of Legacy Spaceflight Tissues from the NASA Institutional Scientific Collection

The NASA Institutional Scientific Collection (ISC) has amassed a collection of valuable space biology samples spanning from early Space Shuttle missions to recent missions on the International Space Station (ISS). However, the full potential of this archive has not been realized, with many samples having been stored for decades without being re-accessed. Given the pace of analytical advancement since the ISC began accumulating samples, we undertook a systematic transcriptional analysis of these samples to reveal additional patterns that may have been missed during the original investigations. We selected 93 mouse and rat samples from 5 separate Space Shuttle, ISS and ground-analogue studies with a focus on muscle, spleen and thymus tissues to allow identification of important changes related to musculoskeletal unloading and immune function. RNA extracted from these tissues was consistently of a quality and we are now generating transcriptional profiling data from sample set. This resulting data will be immediately released through the GeneLab data systems for open analysis by the space biology community. While this study will stand on its own, it will also serve as a model for future, comprehensive, analyses of the ISC.

Rodent↗

DOE OSTI2014

SU-E-T-502: Biometrically Accepted Patient Records

Purpose: To implement a clinically useful palm vein pattern recognition biometric system to treat the correct treatment plan to the correct patient each and every time and to check-in the patient into the department to access the correct medical record. Methods: A commercially available hand vein scanning system was paired to Aria and utilized an ADT interface from the hospital electronic health system. Integration at two points in Aria, version 11 MR2, first at the appointment tracker screen for the front desk medical record access and second at the queue screen on the 4D treatment console took place for patient daily time-out. A test patient was utilized to check accuracy of identification as well as to check that no unintended interactions take place between the 4D treatment console and the hand vein scanning system. This system has been in clinical use since December 2013. Results: Since implementation, 445 patients have been enrolled into our biometric system. 95% of patients learn the correct methodology of hand placement on the scanner in the first try. We have had two instances of patient not found because of a bad initial scan. We simply erased the scanned metric and the patient enrolled again in those cases. The accuracy of the match is 100% for each patient, we have not had one patient misidentified. We can state this because we still use patient photo and date of birth as identifiers. A QA test patient is run monthly to check the integrity of the system. Conclusion: By utilizing palm vein scans along with the date of birth and patient photo, another means of patient identification now exits. This work indicates the successful implementation of technology in the area of patient safety by closing the gap of treating the wrong plan to a patient in radiation oncology. FOJP Service Corporation covered some of the costs of the hardware and software of the palm vein pattern recognition biometric system.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

DOE OSTI2024

Coupling Microdroplet-Based Sample Preparation, Multiplexed Isobaric Labeling, and Nanoflow Peptide Fractionation for Deep Proteome Profiling of the Tissue Microenvironment

There is increasing interest in developing in-depth proteomic approaches for mapping tissue heterogeneity in a cell-type-specific manner to better understand and predict the function of complex biological systems such as human organs. Existing spatially resolved proteomics technologies cannot provide deep proteome coverage due to limited sensitivity and poor sample recovery. Herein, we seamlessly combined laser capture microdissection with a low-volume sample processing technology that includes a microfluidic device named microPOTS (microdroplet processing in one pot for trace samples), multiplexed isobaric labeling, and a nanoflow peptide fractionation approach. The integrated workflow allowed us to maximize proteome coverage of laser-isolated tissue samples containing nanogram levels of proteins. We demonstrated that the deep spatial proteomics platform can quantify more than 5000 unique proteins from a small-sized human pancreatic tissue pixel (∼60,000 μm2) and differentiate unique protein abundance patterns in pancreas. Furthermore, the use of the microPOTS chip eliminated the requirement for advanced microfabrication capabilities and specialized nanoliter liquid handling equipment, making it more accessible to proteomic laboratories.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

DOE OSTI2015

TU-CD-304-11: Veritas 2.0: A Cloud-Based Tool to Facilitate Research and Innovation

Purpose: We introduce Veritas 2.0, a cloud-based, non-clinical research portal, to facilitate translation of radiotherapy research ideas to new delivery techniques. The ecosystem of research tools includes web apps for a research beam builder for TrueBeam Developer Mode, an image reader for compressed and uncompressed XIM files, and a trajectory log file based QA/beam delivery analyzer. Methods: The research beam builder can generate TrueBeam readable XML file either from scratch or from pre-existing DICOM-RT plans. DICOM-RT plan is first converted to XML format and then researcher can interactively modify or add control points to them. Delivered beam can be verified via reading generated images and analyzing trajectory log files. Image reader can read both uncompressed and HND-compressed XIM images. The trajectory log analyzer lets researchers plot expected vs. actual values and deviations among 30 mechanical axes. The analyzer gives an animated view of MLC patterns for the beam delivery. Veritas 2.0 is freely available and its advantages versus standalone software are i) No software installation or maintenance needed, ii) easy accessibility across all devices iii) seamless upgrades and iv) OS independence. Veritas is written using open-source tools like twitter bootstrap, jQuery, flask, and Python-based modules. Results: In the first experiment, an anonymized 7-beam DICOM-RT IMRT plan was converted to XML beam containing 1400 control points. kV and MV imaging points were inserted into this XML beam. In another experiment, a binary log file was analyzed to compare actual vs expected values and deviations among axes. Conclusions: Veritas 2.0 is a public cloud-based web app that hosts a pool of research tools for facilitating research from conceptualization to verification. It is aimed at providing a platform for facilitating research and collaboration. I am full time employee at Varian Medical systems, Palo Alto.

60 APPLIED LIFE SCIENCES↗

DOE OSTI2019

Quantified fracture (joint) clustering in Archean basement, Wyoming: application of the normalized correlation count method

We demonstrate statistically significant self-organized clustering over a length scale range from 10 -2 to 10 1 m for north-striking opening-mode fractures (joints) in Late Archean Mount Owen Quartz Monzonite. Spatial arrangement is a critical fracture network attribute that until recently has only been assessed qualitatively. We use normalized fracture intensity plots and the normalized correlation count (NCC) method of Marrett et al. to discriminate clustered from randomly placed or evenly spaced patterns quantitatively over a wide range of length scales and to test the statistical significance of the resulting patterns. We propose a procedure for interpreting cluster patterns on NCC diagrams generated by the freely available spatial analysis software CorrCount. Results illustrate the efficacy of NCC to measure fracture clustering patterns in texturally homogeneous Archean granitic rock in a setting distant (>2 km) from folds or faults. In their current geological setting, these regional fractures are conduits for water flow and their patterns – and the NCC approach to defining clusters – may be useful guides to the spatial arrangement style and clustering magnitude of conductive fractures in other, less accessible fractured basement rocks.

02 PETROLEUM↗

DOE OSTI2020

Evaluating asynchronous Schwarz solvers on GPUs

With the commencement of the exascale computing era, we realize that the majority of the leadership supercomputers are heterogeneous and massively parallel. Even a single node can contain multiple co-processors such as GPUs and multiple CPU cores. For example, ORNL’s Summit accumulates six NVIDIA Tesla V100 GPUs and 42 IBM Power9 cores on each node. Synchronizing across compute resources of multiple nodes can be prohibitively expensive. Hence, it is necessary to develop and study asynchronous algorithms that circumvent this issue of bulk-synchronous computing. In this study, we examine the asynchronous version of the abstract Restricted Additive Schwarz method as a solver. We do not explicitly synchronize, but allow the communication between the sub-domains to be completely asynchronous, thereby removing the bulk synchronous nature of the algorithm. We accomplish this by using the one-sided Remote Memory Access (RMA) functions of the MPI standard. We study the benefits of using such an asynchronous solver over its synchronous counterpart. We also study the communication patterns governed by the partitioning and the overlap between the sub-domains on the global solver. Finally, we show that this concept can render attractive performance benefits over the synchronous counterparts even for a well-balanced problem.

Nayak, Pratik↗

DOE OSTI2014

Bacterial Communities in Malagasy Soils with Differing Levels of Disturbance Affecting Botanical Diversity

Madagascar is well-known for the exceptional biodiversity of its macro-flora and fauna, but the biodiversity of Malagasy microbial communities remains relatively unexplored. Understanding patterns of bacterial diversity in soil and their correlations with above-ground botanical diversity could influence conservation planning as well as sampling strategies to maximize access to bacterially derived natural products. We present the first detailed description of Malagasy soil bacterial communities from a targeted 16S rRNA gene survey of greater than 290,000 sequences generated using 454 pyrosequencing. Two sampling plots in each of three forest conservation areas were established to represent different levels of disturbance resulting from human impact through agriculture and selective exploitation of trees, as well as from natural impacts of cyclones. In parallel, we performed an in-depth characterization of the total vascular plant morphospecies richness within each plot. The plots representing different levels of disturbance within each forest did not differ significantly in bacterial diversity or richness. Changes in bacterial community composition were largest between forests rather than between different levels of impact within a forest. The largest difference in bacterial community composition with disturbance was observed at the Vohibe forest conservation area, and this difference was correlated with changes in both vascular plant richness and soil pH. These results provide the first survey of Malagasy soil bacterial diversity and establish a baseline of botanical diversity within important conservation areas.

54 ENVIRONMENTAL SCIENCES↗