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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 415 records · Page 23
All sourcesNASA NTRSDOE OSTI
NASA NTRS1972

A parametric approach to irregular fatigue prediction

A parametric approach to irregular fatigue protection is presented. The method proposed consists of two parts: empirical determination of certain characteristics of a material by means of a relatively small number of well-defined standard tests, and arithmetical application of the results obtained to arbitrary loading histories. The following groups of parameters are thus taken into account: (1) the variations of the mean stress, (2) the interaction of these variations and the superposed oscillating stresses, (3) the spectrum of the oscillating-stress amplitudes, and (4) the sequence of the oscillating-stress amplitudes. It is pointed out that only experimental verification can throw sufficient light upon possibilities and limitations of this (or any other) prediction method.

Erismann, T. H.↗
NASA NTRS1980

The ancient sun: Fossil record in the earth, moon and meteorites; Proceedings of the Conference, Boulder, CO, October 16-19, 1979

Papers are presented concerning theories of solar variability and their consequences for luminosity, particle emission and magnetic field changes within the past 4.5 billion years, and on the records of such solar behavior in lunar, meteoritic and terrestrial materials. Specific topics include the neutrino luminosity of the sun, the relation of sunspots to the terrestrial climate of the past 100 years, solar modulation of galactic cosmic rays, the historical record of solar activity, C-14 variations in terrestrial and marine reservoirs, and solar particle fluxes as indicated by track, thermoluminescence and solar wind measurements in lunar rocks. Attention is also given to the spin-down of the solar interior through circulation currents and fluid instabilities, grain surface exposure models in planetary regoliths, rare gases in the solar wind, nitrogen isotopic variations in the lunar regolith, the influence of solar UV radiation on climate, and the pre-main sequence evolution of the sun and evidence of the primordial solar wind in the electromagnetic induction heating of the asteroids and moon.

Pepin, R. O.↗
NASA NTRS1988

IUE observations of X-ray-selected stars

UV spectra for four X-ray-selected bright (V less than 10) late-type (F and G) stars have been obtained in both the long- and short-wavelength cameras of the IUE satellite. The stars were selected because they had the largest ratios of X-ray to optical luminosity for their spectral type, with known binaries being eliminated from the sample in order to determine if other mechanisms for extreme X-ray emission are present. Three of the four stars in the sample have since been observed to be binaries with radial-velocity variations consistent with periods of a few days. The fourth star, HD 142361 is a pre-main-sequence star based on the detection of Li I at a wavelength of 6707 A in absorption.

Bergoffen, Martin J.↗
NASA NTRS2001

The Role of Magnetograms in Testing Models of Coronal Mass Ejections

A general review of current and future magnetographic capabilities is presented with emphasis on how they address observational predictions of CME models (e.g., the model/observation matrix developed in the SHINE 2000 workshop). Existing line-of-sight magnetographs can observe certain structural and kinematic properties of CME source regions when they are on the visible disk. These include polarity configuration, location and structure of the magnetic inversion line, proper motions of magnetic elements, and time variation of flux. Additional chromospheric magnetograms provide information on how the field spreads with height and, if properly sequenced with photospheric magnetograms, can determine whether flux is emerging or submerging. Vector magnetographs can provide information about currents and magnetic shear but will only begin to attain the spatial and temporal coverage appropriate to CMEs with the advent of the SOLIS vector spectromagnetograph and, hopefully, its copies at several widely spaced longitudes. Important additions to the SHINE 2000 matrix are required to define an observational program. These include spatial and temporal resolutions and extents as well as needed sensitivity.

Jones, Harrison P.↗
NASA NTRS2003

Global and Local Helioseismic Studies of Solar Convection Zone Dynamics Using SOI-MDI on SOHO

Our joint collaborative analyses of global mode data to characterize the solar differential rotation (e.g. Thompson et al. 1996, Schou et al. 1998), and most recently to detect and analyze temporal variations in angular velocity Omega profiles both within the convection zone and in the deeper radiative interior (e.g. Howe et al 2000a,b; Toomre et al. 2000), have led to a series of fascinating discoveries. These should be pursued further as the solar cycle continues. The physical deductions being made from these studies have been greatly strengthened by utilizing both SOI-MDI and GONG data in order to have two independent observational realizations of Doppler images spanning a five-year interval, using two separate procedures to determine global mode splittings, and then analyzing those splitting data sets using both RLS and SOLA inversion procedures. There are considerable subtleties in the effects of instrumental response functions and calibrations, sensitivity of peak finding algorithms and their mode leakage estimates, and stochastic variations in mode amplitudes that can all contribute to apparent changes in the Omega profiles being inferred from sequences of helioseismic data. We have come to understand the implications of many of these calibration and analysis steps, greatly aided by frequent multi-week collaborative working sessions in our Helioseismic Analysis Facility (HAF) at JILA involving many members of the SO1 dynamics and inversion team, including most of our Co-Is during the summer months when we hold intensive working sessions. Considerable further focused attention is required in a collaborative setting on such global mode issues as we continue studying the changing sun.

Toomre, Juri↗
DOE OSTI2019

De novo Nanopore read quality improvement using deep learning

BACKGROUND: Long read sequencing technologies such as Oxford Nanopore can greatly decrease the complexity of de novo genome assembly and large structural variation identification. Currently Nanopore reads have high error rates, and the errors often cluster into low-quality segments within the reads. The limited sensitivity of existing read-based error correction methods can cause large-scale mis-assemblies in the assembled genomes, motivating further innovation in this area. RESULTS: Here we developed a Convolutional Neural Network (CNN) based method, called MiniScrub, for identification and subsequent "scrubbing" (removal) of low-quality Nanopore read segments to minimize their interference in downstream assembly process. MiniScrub first generates read-to-read overlaps via MiniMap2, then encodes the overlaps into images, and finally builds CNN models to predict low-quality segments. Applying MiniScrub to real world control datasets under several different parameters, we show that it robustly improves read quality, and improves read error correction in the metagenome setting. Compared to raw reads, de novo genome assembly with scrubbed reads produces many fewer mis-assemblies and large indel errors. CONCLUSIONS: MiniScrub is able to robustly improve read quality of Oxford Nanopore reads, especially in the metagenome setting, making it useful for downstream applications such as de novo assembly. We propose MiniScrub as a tool for preprocessing Nanopore reads for downstream analyses. MiniScrub is open-source software and is available at https://bitbucket.org/berkeleylab/jgi-miniscrub .

59 BASIC BIOLOGICAL SCIENCES↗
NASA NTRS2009

Photometric Studies of Orbital Debris at GEO

Orbital debris represents a significant and increasing risk to operational spacecraft. Here we report on photometric observations made in standard BVRI filters at the Cerro Tololo Inter-American Observatory (CTIO) in an effort to determine the physical characteristics of optically faint debris at geosynchronous Earth orbit (GEO). Our sample is taken from GEO objects discovered in a survey with the University of Michigan s 0.6-m Curtis-Schmidt telescope (known as MODEST, for Michigan Orbital DEbris Survey Telescope), and then followed up in real-time with the CTIO/SMARTS 0.9-m for orbits and photometry. For a sample of 50 objects, calibrated sequences in RB- V-I-R filters have been obtained with the CTIO/SMARTS 0.9-m. For objects that do not show large brightness variations, the colors are largely redder than solar in both B-R and R-I. The width of the color distribution may be intrinsic to the nature of the surfaces, but also could imply that we are seeing irregularly shaped objects and measuring the colors at different times with just one telescope. For irregularly shaped objects tumbling at unknown orientations and rates, such sequential filter measurements using one telescope are subject to large errors for interpretation. If all observations in all filters in a particular sequence are of the same surface at the same solar and viewing angles, then the colors are meaningful. Where this is not the case, interpretation of the observed colors is impossible. For a smaller sample of objects we have observed with synchronized CCD cameras on the two telescopes. The CTIO/SMARTS 0.9-m observes in B, and the Schmidt in R. The CCD cameras are electronically linked together so that the start time and duration of observations are both the same to better than 50 milliseconds. Now the observed B-R color is a true measure of the scattered illuminated area of the debris piece for that observation.

Seitzer, Patrick↗
DOE OSTI2022

Year-around survey and manipulation experiments reveal differential sensitivities of soil prokaryotic and fungal communities to saltwater intrusion in Florida Everglades wetlands

Global sea-level rise is transforming coastal ecosystems, especially freshwater wetlands, in part due to increased episodic or chronic saltwater exposure, leading to shifts in biogeochemistry, plant- and microbial communities, as well as ecological services. Yet, it is still difficult to predict how soil microbial communities respond to the saltwater exposure because of poorly understood microbial sensitivity within complex wetland soil microbial communities, as well as the high spatial and temporal heterogeneity of wetland soils and saltwater exposure. To address this, we first conducted a two-year survey of microbial community structure and bottom water chemistry in submerged surface soils from 14 wetland sites across the Florida Everglades. We identified ecosystem-specific microbial biomarker taxa primarily associated with variation in salinity. Bacterial, archaeal and fungal community composition differed between freshwater, mangrove, and marine seagrass meadow sites, irrespective of soil type or season. Especially, methanogens, putative denitrifying methanotrophs and sulfate reducers shifted in relative abundance and/or composition between wetland types. Methanogens and putative denitrifying methanotrophs declined in relative abundance from freshwater to marine wetlands, whereas sulfate reducers showed the opposite trend. A four-year experimental simulation of salt-water intrusion in a pristine freshwater site and a previously saltwater-impacted site corroborated the highest sensitivity and relative increase of sulfate reducers, as well as taxon-specific sensitivity of methanogens, in response to continuously pulsing of saltwater treatment. Collectively, these results suggest that besides increased salinity, saltwater-mediated increased sulfate availability leads to displacement of methanogens by sulfate reducers even at low or temporal salt exposure. In conclusion, these changes of microbial composition could affect organic matter degradation pathways in coastal freshwater wetlands exposed to sea-level rise, with potential consequences, such as loss of stored soil organic carbon.

54 ENVIRONMENTAL SCIENCES↗
NASA NTRS1988

Monitoring solar-type stars for luminosity variations

Since 1984, researchers have made more than 1500 differential photometric b (471 nm) and y (551 nm) measurements of three dozen solar-like lower main sequence stars whose chromospheric activity was previosly studied by O. C. Wilson. Here, researchers describe their methodology and the statistical tests used to distinguish intrinsic stellar variability from observational and instrument errors. The incidence of detected variability among the program and comparison stars is summarized. Among the 100 plus pairs of stars measured differentially, only a dozen were found that were unusually constant, with peak-to-peak amplitudes of seasonal mean brightness smaller than 0.3 percent (0.003 mag) over a two-to-three-year interval.

Lockwood, G. W.↗
DOE OSTI2024

First-principles study of the structures and redox mechanisms of Ni-rich lithium nickel manganese cobalt oxides

To reduce the cobalt (Co) content in lithium-ion batteries, Ni-rich (high-Ni) lithium nickel manganese cobalt oxides (NMC) are pursued as one of the next-generation cathode materials. However, there is still debate on the crystal and electronic structures of the baseline, LiNiO 2 . Density Functional Theory (DFT) calculations were performed to provide a theoretical understanding of Ni-rich NMC. First, it was found that the commonly used $R\bar{3}m$ structure for LiNiO 2 is metallic, contrary to the experimentally reported mix-conducting behavior. Among the four different space groups, $R\bar{3}m$, C2/m, P2 1 /c, and P2/c, P2/c with charge disproportionation of Ni 2+ and Ni 4+ is the most energetically stable and semiconducting structure of LiNiO 2 . Therefore, the atomic structures of representative Ni-rich NMC were built by partially replacing Ni with Co or Mn in the P2/c LiNiO 2 to form Li x Ni y Mn z Co 1-y-z O 2 . In the fully lithiated (x=1.0) high Ni content NMC (y>0.5), the oxidation state of all Mn ions becomes 4+, while Co ions still maintain 3+, and part of the Ni ions become 3+ to compensate for the charge. Upon delithiation, the local environment shows more variation of the charge states on the transition metal (TM) ions. The average oxidation on each TM follows a sequence of losing electrons that starts from Ni 2+ to Ni 3+ , then oxidizing Ni 3+ and Co 3+ , while Mn 4+ remains electrochemically inactive till x=0. Finally, a general relationship for the oxidation state change in each TM as a function of x is derived and shows agreement with both modeling and experimental data.

25 ENERGY STORAGE↗
DOE OSTI2019

Effects of codon optimization on coagulation factor IX translation and structure: Implications for protein and gene therapies

Synonymous codons occur with different frequencies in different organisms, a phenomenon termed codon usage bias. Codon optimization, a common term for a variety of approaches used widely by the biopharmaceutical industry, involves synonymous substitutions to increase protein expression. It had long been presumed that synonymous variants, which, by definition, do not alter the primary amino acid sequence, have no effect on protein structure and function. However, a critical mass of reports suggests that synonymous codon variations may impact protein conformation. To investigate the impact of synonymous codons usage on protein expression and function, we designed an optimized coagulation factor IX (FIX) variant and used multiple methods to compare its properties to the wild-type FIX upon expression in HEK293T cells. We found that the two variants differ in their conformation, even when controlling for the difference in expression levels. Using ribosome profiling, we identified robust changes in the translational kinetics of the two variants and were able to identify a region in the gene that may have a role in altering the conformation of the protein. Our data have direct implications for codon optimization strategies, for production of recombinant proteins and gene therapies.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2022

The ALMaQUEST Survey X: what powers merger induced star formation?

ABSTRACT Galaxy mergers are known to trigger both extended and central star formation. However, what remains to be understood is whether this triggered star formation is facilitated by enhanced star formation efficiencies (SFEs), or an abundance of molecular gas fuel. This work presents spatially resolved measurements of CO emission collected with the Atacama Large Millimetre Array (ALMA) for 20 merging galaxies (either pairs or post-mergers) selected from the Mapping Nearby Galaxies at Apache Point Observatory (MaNGA) survey. Eleven additional merging galaxies are selected from the ALMA MaNGA QUEnching and STar formation (ALMaQUEST) survey, resulting in a set of 31 mergers at various stages of interaction and covering a broad range of star formation rates (SFRs). We investigate galaxy-to-galaxy variations in the resolved Kennicutt–Schmidt relation, (rKS: $\Sigma _{\textrm {H}_2}$ versus ΣSFR), the resolved molecular gas main sequence (rMGMS: Σ⋆ versus $\Sigma _{\textrm {H}_2}$), and the resolved star-forming main sequence (rSFMS: Σ⋆ versus ΣSFR). We quantify offsets from these resolved relations to determine if SFR, molecular gas fraction, or/and SFE is/are enhanced in different regions of an individual galaxy. By comparing offsets in all three parameters, we can discern whether gas fraction or SFE powers an enhanced ΣSFR. We find that merger-induced star formation can be driven by a variety of mechanisms, both within a galaxy and between different mergers, regardless of interaction stage.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2016

Transient expression in Nicotiana benthamiana for rapid functional analysis of genes involved in non‐photochemical quenching and carotenoid biosynthesis

Summary Plants must switch rapidly between light harvesting and photoprotection in response to environmental fluctuations in light intensity. This switch can lead to losses in absorbed energy usage, as photoprotective energy dissipation mechanisms can take minutes to hours to fully relax. One possible way to improve photosynthesis is to engineer these energy dissipation mechanisms (measured as non‐photochemical quenching of chlorophyll a fluorescence, NPQ ) to induce and relax more quickly, resulting in smaller losses under dynamic light conditions. Previous studies aimed at understanding the enzymes involved in the regulation of NPQ have relied primarily on labor‐intensive and time‐consuming generation of stable transgenic lines and mutant populations – approaches limited to organisms amenable to genetic manipulation and mapping. To enable rapid functional testing of NPQ ‐related genes from diverse organisms, we performed Agrobacterium tumefaciens ‐mediated transient expression assays in Nicotiana benthamiana to test if NPQ kinetics could be modified in fully expanded leaves. By expressing Arabidopsis thaliana genes known to be involved in NPQ , we confirmed the viability of this method for studying dynamic photosynthetic processes. Subsequently, we used naturally occurring variation in photosystem II subunit S, a modulator of NPQ in plants, to explore how differences in amino acid sequence affect NPQ capacity and kinetics. Finally, we functionally characterized four predicted carotenoid biosynthesis genes from the marine algae Nannochloropsis oceanica and Thalassiosira pseudonana and examined the effect of their expression on NPQ in N. benthamiana . This method offers a powerful alternative to traditional gene characterization methods by providing a fast and easy platform for assessing gene function in planta .

Plant Sciences↗
DOE OSTI2019

Construction and comparison of three reference-quality genome assemblies for soybean

Here, we report reference-quality genome assemblies and annotations for two accessions of soybean (Glycine max) and for one accession of Glycine soja, the closest wild relative of G. max. The G. max assemblies provided are for widely used US cultivars: the northern line Williams 82 (Wm82) and the southern line Lee. The Wm82 assembly improves the prior published assembly, and the Lee and G. soja assemblies are new for these accessions. Comparisons among the three accessions show generally high structural conservation, but nucleotide difference of 1.7 single-nucleotide polymorphisms (snps) per kb between Wm82 and Lee, and 4.7 snps per kb between these lines and G. soja. snp distributions and comparisons with genotypes of the Lee and Wm82 parents highlight patterns of introgression and haplotype structure. Comparisons against the US germplasm collection show placement of the sequenced accessions relative to global soybean diversity. Analysis of a pan-gene collection shows generally high conservation, with variation occurring primarily in genomically clustered gene families. We found approximately 40-42 inversions per chromosome between either Lee or Wm82v4 and G. soja, and approximately 32 inversions per chromosome between Wm82 and Lee. We also investigated five domestication loci. For each locus, we found two different alleles with functional differences between G. soja and the two domesticated accessions. The genome assemblies for multiple cultivated accessions and for the closest wild ancestor of soybean provides a valuable set of resources for identifying causal variants that underlie traits for the domestication and improvement of soybean, serving as a basis for future research and crop improvement efforts for this important crop species.

59 BASIC BIOLOGICAL SCIENCES↗
NASA NTRS1977

Chemistry of Apollo 12 mare basalts - Magma types and fractionation processes

Major and trace element data for a large suite of petrographically diverse Apollo 12 mare basalts are presented, and magma types sampled at the Apollo 12 site are characterized. The data confirm earlier classifications of the basalts into olivine, pigeonite, ilmenite, and feldspathic basalts. The olivine and pigeonite basalts are shown to be comagnetic and related by olivine fractionation. The other types, which differ in trace element and isotopic characteristics, are derived from different sources within the lunar interior. The spatial relations between the main basalt types are discussed in terms of local cratering events, and it is suggested that the younger ilmenite basalts overlie the olivine-pigeonite basalts. The role of olivine-dominated near-surface crystal fractionation in causing chemical variation is examined, and a relation between inferred cooling rate and the position of a sample in the fractionation sequence is determined.

Rhodes, J. M.↗
NASA NTRS1981

Momentum and energy balance in late-type stellar winds

Observations at ultraviolet and X-ray wavelengths indicate that the classical picture of a static stellar atmosphere containing a radiative equilibrium temperature distribution is inapplicable to the majority of late type stars. Mass loss and the presence of atmospheric regions characterized by gas temperatures in excess of the stellar effective temperature appear to be almost ubiquitous throughout the HR diagram. Evidence pertaining to the thermal and dynamical structure of the outer envelopes of cool stars is summarized. These results are compared with the predictions of several theoretical models which were proposed to account for mass loss from latetype stars. Models in which the outflow is thermally radiatively, or wave driven are considered for identification of the physical processes responsible for the observed wind properties. The observed variation of both the wind, thermal and dynamical structure as one proceeds from the supergiant branch toward the main sequence in the cool portion of the HR diagram give consideration to potential mechanisms for heating and cooling the flow from low gravity stars.

Macgregor, K. B.↗
NASA NTRS2006

Improving Grasp Skills Using Schema Structured Learning

Abstract In the control-based approach to robotics, complex behavior is created by sequencing and combining control primitives. While it is desirable for the robot to autonomously learn the correct control sequence, searching through the large number of potential solutions can be time consuming. This paper constrains this search to variations of a generalized solution encoded in a framework known as an action schema. A new algorithm, SCHEMA STRUCTURED LEARNING, is proposed that repeatedly executes variations of the generalized solution in search of instantiations that satisfy action schema objectives. This approach is tested in a grasping task where Dexter, the UMass humanoid robot, learns which reaching and grasping controllers maximize the probability of grasp success.

Platt, Robert↗
DOE OSTI2018

Annotation of the Corymbia terpene synthase gene family shows broad conservation but dynamic evolution of physical clusters relative to Eucalyptus

Terpenes are economically and ecologically important phytochemicals. Their synthesis is controlled by the terpene synthase (TPS) gene family, which is highly diversified throughout the plant kingdom. The plant family Myrtaceae are characterised by especially high terpene concentrations, and considerable variation in terpene profiles. Many Myrtaceae are grown commercially for terpene products including the eucalypts Corymbia and Eucalyptus. Eucalyptus grandis has the largest TPS gene family of plants currently sequenced, which is largely conserved in the closely related E. globulus. However, the TPS gene family has been well studied only in these two eucalypt species. The recent assembly of two Corymbia citriodora subsp. variegata genomes presents an opportunity to examine the conservation of this important gene family across more divergent eucalypt lineages. Manual annotation of the TPS gene family in C. citriodora subsp. variegata revealed a similar overall number, and relative subfamily representation, to that previously reported in E. grandis and E. globulus. Many of the TPS genes were in physical clusters that varied considerably between Eucalyptus and Corymbia, with several instances of translocation, expansion/contraction and loss. Notably, there was greater conservation in the subfamilies involved in primary metabolism than those involved in secondary metabolism, likely reflecting different selective constraints. The variation in cluster size within subfamilies and the broad conservation between the eucalypts in the face of this variation are discussed, highlighting the potential contribution of selection, concerted evolution and stochastic processes. Finally, these findings provide the foundation to better understand terpene evolution within the ecologically and economically important Myrtaceae.

59 BASIC BIOLOGICAL SCIENCES↗