Multiobjective evaluation and optimization of CMT-bone on multiple CPU/GPU systems
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Computer Science↗
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RAMSYS: Resource-Aware Asynchronous Data Transfer with Multicore SYStems
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Computer Science↗
Image Classification and Control of Microfluidic Systems
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Computer science↗
Parallel Evolutionary Optimization for Neuromorphic Network Training
One of the key impediments to the success of current neuromorphic computing architectures is the issue of how best to program them. Evolutionary optimization (EO) is one promising programming technique; in particular, its wide applicability makes it especially attractive for neuromorphic architectures, which can have many different characteristics. In this paper, we explore different facets of EO on a spiking neuromorphic computing model called DANNA. We focus on the performance of EO in the design of our DANNA simulator, and on how to structure EO on both multicore and massively parallel computing systems. We evaluate how our parallel methods impact the performance of EO on Titan, the U.S.'s largest open science supercomputer, and BOB, a Beowulf-style cluster of Raspberry Pi's. We also focus on how to improve the EO by evaluating commonality in higher performing neural networks, and present the result of a study that evaluates the EO performed by Titan.
97 MATHEMATICS AND COMPUTING↗
Ocean of Data: Integrating First-Principles Calculations and CALPHAD Modeling with Machine Learning
Thermodynamics is a science concerning the state of a system, whether it is stable, metastable or unstable, when interacting with the surroundings. Computational thermodynamics enables quantitative calculations of thermodynamic properties as a function of both external conditions and internal configurations, in terms of first and second derivatives of energy with respect to either potentials or molar quantities. Thermodynamic modeling based on the CALPHAD method enables the thermodynamics beyond stable states and is the foundation of Materials Genome and materials design. In last several decades, first-principles calculations based on density functional theory have provided invaluable thermochemical data to improve the robustness of CALPHAD modeling. Today with ever increasing computing power and large amount of data repositories online, it calls for a new paradigm for CALPHAD modeling approach incorporating machine learning to create a sustainable ecosystem for the ocean of data and for emergent behaviors.
Chemistry↗
A computational modeling framework for pre-clinical evaluation of cardiac mapping systems
There are a variety of difficulties in evaluating clinical cardiac mapping systems, most notably the inability to record the transmembrane potential throughout the entire heart during patient procedures which prevents the comparison to a relevant “gold standard”. Cardiac mapping systems are comprised of hardware and software elements including sophisticated mathematical algorithms, both of which continue to undergo rapid innovation. The purpose of this study is to develop a computational modeling framework to evaluate the performance of cardiac mapping systems. The framework enables rigorous evaluation of a mapping system’s ability to localize and characterize (i.e., focal or reentrant) arrhythmogenic sources in the heart. The main component of our tool is a library of computer simulations of various dynamic patterns throughout the entire heart in which the type and location of the arrhythmogenic sources are known. Our framework allows for performance evaluation for various electrode configurations, heart geometries, arrhythmias, and electrogram noise levels and involves blind comparison of mapping systems against a “silver standard” comprised of computer simulations in which the precise transmembrane potential patterns throughout the heart are known. A feasibility study was performed using simulations of patterns in the human left atria and three hypothetical virtual catheter electrode arrays. Activation times (AcT) and patterns (AcP) were computed for three virtual electrode arrays: two basket arrays with good and poor contact and one high-resolution grid with uniform spacing. The average root mean squared difference of AcTs of electrograms and those of the nearest endocardial action potential was less than 1 ms and therefore appears to be a poor performance metric. In an effort to standardize performance evaluation of mapping systems a novel performance metric is introduced based on the number of AcPs identified correctly and those considered spurious as well as misclassifications of arrhythmia type; spatial and temporal localization accuracy of correctly identified patterns was also quantified. This approach provides a rigorous quantitative analysis of cardiac mapping system performance. Proof of concept of this computational evaluation framework suggests that it could help safeguard that mapping systems perform as expected as well as provide estimates of system accuracy.
59 BASIC BIOLOGICAL SCIENCES↗
Neutron Activation Foil and Thermoluminescent Dosimeter Responses to a Lead Reflected Pulse of the CEA Valduc SILENE Critical Assembly
This benchmark experiment was conducted as a joint venture between the US Department of Energy (DOE) and the French Commissariat à l'Energie Atomique (CEA). Staff at the Oak Ridge National Laboratory (ORNL) in the US and the Centre de Valduc in France planned this experiment. The experiment was conducted on October 13, 2010 in the SILENE critical assembly facility at Valduc. Several other organizations contributed to this experiment and the subsequent evaluation, including CEA Saclay, Lawrence Livermore National Laboratory (LLNL), the Y-12 National Security Complex (NSC), Babcock International Group in the United Kingdom, and Los Alamos National Laboratory (LANL). The goal of this experiment was to measure neutron activation and thermoluminescent dosimeter (TLD) doses from a source similar to a fissile solution critical excursion. The resulting benchmark can be used for validation of computer codes and nuclear data libraries as required when performing analysis of criticality accident alarm systems (CAASs). A secondary goal of this experiment was to qualitatively test performance of two CAAS detectors similar to those currently and formerly in use in some US DOE facilities. The detectors tested were the CIDAS MkX and the Rocky Flats NCD-91. The CIDAS detects gammas with a Geiger-Muller tube, and the Rocky Flats detects neutrons via charged particles produced in a thin 6 LiF disc, depositing energy in a Si solid-state detector. These detectors were being evaluated to determine whether they would alarm, so they were not expected to generate benchmark quality data.
46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗
Transforming Energy through Computational Science: Computing for Clean Energy
This fact sheet discusses the opportunity space for NREL's computational science capabilities to address national clean energy objectives. Achieving a carbon-free power sector by 2035 as a step towards a decarbonized U.S. energy economy in 2050 will require major advances in power generation, autonomous energy systems, transportation, and buildings/communities. Development of integrated modeling approaches for complex energy systems will be essential for deployment. Success requires developments in optimization and control theory, complemented by machine learning (ML) and artificial intelligence (AI), all of which in turn need targeted investments in breadth and scale of computing. This document defines an opportunity space where: embracing computing can link established research and development (R&D) to a decarbonization agenda; pursuing emerging approaches can accelerate the pace of technology advancement across the portfolio; and leading by example could reduce the carbon footprint of computing worldwide.
advanced computing↗
AlignCT: Fine alignment for x-ray computed tomography systems
The AlignCT project has established a protocol for aligning x-ray computed tomography (CT) systems, which combines high precision radiography phantoms and software alignment algorithms.
46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗
Leveraging machine learning to improve understanding and predictability of weather/climate extremes and the resilience of human systems
Focal Area(s): Developing hybrid models for predicting weather/climate extremes at the intersection of the urban environment (focal area #2). Science Challenge: Limited by many sources of uncertainty, numerical models are unable to accurately simulate weather and climate processes and this problem is particularly acute for modeling extreme events, including hurricanes. Moreover, computational limits within these numerical models bound our ability to develop large ensembles to explore this uncertainty and the implications relative to characterization of risk and resilience within the human systems that are impacted by changes in extremes.
54 ENVIRONMENTAL SCIENCES↗
RELAP-7 Code Assessment Plan and Requirement Traceability Matrix
The RELAP-7, a safety analysis code for nuclear reactor system, is under development at Idaho National Laboratory (INL). Overall, the code development is directed towards leveraging the advancements in computer science technology, numerical solution methods and physical models over the last decades. Recently, INL has also been putting an effort to establish the code assessment plan, which aims to ensure an improved final product quality through the RELAP-7 development process. The ultimate goal of this plan is to propose a suitable way to systematically assess the wide range of software requirements for RELAP-7, including the software design, user interface, and technical requirements, etc. To this end, we first survey the literature (i.e., international/domestic reports, research articles) addressing the desirable features generally required for advanced nuclear system safety analysis codes. In addition, the V&V (verification and validation) efforts as well as the legacy issues of several recently-developed codes (e.g., RELAP5-3D, TRACE V5.0) are investigated. Lastly, this paper outlines the Requirement Traceability Matrix (RTM) for RELAP-7 which can be used to systematically evaluate and identify the code development process and its present capability.
42 ENGINEERING↗
Optimization-based control using input convex neural networks
Input convex neural networks (ICNNs) are a family of deep learning models where the outputs are constructed to be convex functions of the inputs. By parameterizing system models using ICNNs, optimization-based control problems can be solved as convex optimization problems, leading to improved performance and robustness. This work proposes a novel framework where the control objective function and constraints are modelled using ICNNs. A case study of optimization-based control with output constraints is conducted on a process with input multiplicity and nonminimum phase behavior. The simulation results demonstrate improved economic yield compared with normal neural networks. Additionally, the input convexity formulation is compared with simple regularization techniques, and unique benefits such as improved data efficiency and robustness of the proposed formulation are shown. Finally, by explicitly incorporating prior knowledge about convexity, this framework provides a good balance between the universal approximation power of deep learning and computational feasibility required by control.
42 ENGINEERING↗
Performance of biologically inspired algorithms tuned on TiO 2 nanoparticle benchmark system
Biologically inspired optimization algorithms (BIOA), such as particle swarm optimization (PSO) and differential evolution (DE), are often applied to a specific problem with the tacit assumptions that each algorithm will have a unique set of “ideal” tuning parameters that provide “best” performance, and that, once tuned, two different optimization algorithms ought to exhibit distinct performance. This work tests those assumptions by systematically comparing PSO and DE applied to identify stable and metastable configurations of a benchmark system, a titania dimer Ti 2 O 4 , whose energy is described by a modified Matsui-Akaogi pairwise potential. The hypotheses (H) are formally expressed as: (H1) for both PSO and DE there exists a unique, optimal set of tuning parameters that maximize its performance on a given problem; (H2) when running two different BIOAs, one algorithm must demonstrate superior performance over the other. By identifying and studying an approximate Pareto-optimal set of tuning parameters for DE and PSO, H1 is shown to be strictly false for DE, and tentatively false for PSO, while H2 is shown to be false with respect to certain statistics. Here, we further investigate the correlations between key tuning parameters and algorithm performance. Our conclusion may be implemented to further optimize and develop BIOAs applied to materials systems.
36 MATERIALS SCIENCE↗
Dragonfly-Inspired Algorithms for Intercept Trajectory Planning
Dragonflies are known to be highly successful hunters (achieving 90-95% success rate in nature) that implement a guidance law like proportional navigation to intercept their prey. This project tested the hypothesis that dragonflies are able to implement proportional navigation using prey-image translation on their eyes. The model dragonfly presented here calculates changes in pitch and yaw to maintain the prey's image at a designated location (the fovea) on a two-dimensional screen (the model's eyes ). When the model also uses self-knowledge of its own maneuvers as an error signal to adjust the location of the fovea, its interception trajectory becomes equivalent to proportional navigation. I also show that this model can also be applied successfully (in a limited number of scenarios) against maneuvering prey. My results provide a proof-of-concept demonstration of the potential of using the dragonfly nervous system to design a robust interception algorithm for implementation on a man-made system.
59 BASIC BIOLOGICAL SCIENCES↗
Supervised and Unsupervised Machine Learning to Understanding Reactive-transport Data [Slides]
Every physio-chemical variable affects the system. At well, carbonate minerals dominated the system along with clay minerals. At distant well, clay minerals dominated the system. Dominance of K at both well signifies that clay minerals play a major role in the system
54 ENVIRONMENTAL SCIENCES↗
Review of the synergies between computational modeling and experimental characterization of materials across length scales
With the increasing interplay between experimental and computational approaches at multiple length scales, new research directions are emerging in materials science and computational mechanics. Such cooperative interactions find many applications in the development, characterization and design of complex material systems. This manuscript provides a broad and comprehensive overview of recent trends in which predictive modeling capabilities are developed in conjunction with experiments and advanced characterization to gain a greater insight into structure–property relationships and study various physical phenomena and mechanisms. The focus of this review is on the intersections of multiscale materials experiments and modeling relevant to the materials mechanics community. After a general discussion on the perspective from various communities, the article focuses on the latest experimental and theoretical opportunities. Emphasis is given to the role of experiments in multiscale models, including insights into how computations can be used as discovery tools for materials engineering, rather than to “simply” support experimental work. This is illustrated by examples from several application areas on structural materials. In conclusion this manuscript ends with a discussion on some problems and open scientific questions that are being explored in order to advance this relatively new field of research.
3-D microstructure characterization↗
Advances and opportunities in materials science for scalable quantum computing
We report that by harnessing unique quantum mechanical phenomena, such as superposition and entanglement, quantum computers offer the possibility to drastically outperform classical computers for certain classes of problems. The realization of this potential, however, presents a substantial challenge, because noise and imperfections associated with the materials used to fabricate devices can obscure the delicate quantum mechanical effects that enable quantum computing. Hence, progress in synthesis, characterization, and modeling of materials for quantum computing have driven many exciting advances in recent years and will become increasingly important in the years to come. As progressively more complex, multi-qubit systems come online, and as significant government and industrial investment drives research forward, new challenges and opportunities for materials science continue to emerge. The articles in this issue survey the current state of materials science progress and obstacles for some leading quantum computing platforms; opportunities for deeper involvement by materials scientists abound. Ultimate realization of the full potential of quantum computers will require a multidisciplinary effort spanning many traditional areas of expertise.
36 MATERIALS SCIENCE↗
Advances in Cross-Cutting Ideas for Computational Climate Science
This report presents results from the DOE-sponsored workshop titled, ``Advancing X-Cutting Ideas for Computational Climate Science Workshop,'' known as AXICCS, held on September 12--13, 2016 in Rockville, MD. The workshop brought together experts in climate science, computational climate science, computer science, and mathematics to discuss interesting but unsolved science questions regarding climate modeling and simulation, promoted collaboration among the diverse scientists in attendance, and brainstormed about possible tools and capabilities that could be developed to help address them. Emerged from discussions at the workshop were several research opportunities that the group felt could advance climate science significantly. These include (1) process-resolving models to provide insight into important processes and features of interest and inform the development of advanced physical parameterizations, (2) a community effort to develop and provide integrated model credibility, (3) including, organizing, and managing increasingly connected model components that increase model fidelity yet complexity, and (4) treating Earth system models as one interconnected organism without numerical or data based boundaries that limit interactions. The group also identified several cross-cutting advances in mathematics, computer science, and computational science that would be needed to enable one or more of these big ideas. It is critical to address the need for organized, verified, and optimized software, which enables the models to grow and continue to provide solutions in which the community can have confidence. Effectively utilizing the newest computer hardware enables simulation efficiency and the ability to handle output from increasingly complex and detailed models. This will be accomplished through hierarchical multiscale algorithms in tandem with new strategies for data handling, analysis, and storage. These big ideas and cross-cutting technologies for enabling breakthrough climate simulation advancements also need the "glue" of outreach and learning across the scientific domains to be successful. The workshop identified several strategies to allow productive, continuous engagement across those who have a broad knowledge of the various angles of the problem. Specific ideas to foster education and tools to make material progress were discussed. Examples include follow-on cross-cutting meetings that enable unstructured discussions of the types this workshop fostered. A concerted effort to recruit undergraduate and graduate students from all relevant domains and provide them experience, training, and networking across their immediate expertise is needed. This will broaden and expand their exposure to the future needs and solutions, and provide a pipeline of scientists with a diversity of knowledge and know-how. Providing real-world experience with subject matter experts from multiple angles may also motivate the students to attack these problems and even come up with the missing solutions.
54 ENVIRONMENTAL SCIENCES↗