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At least 433 records · Page 24

Active deep kernel learning of molecular properties from structural embeddings

As vast databases of chemical identities become increasingly available, the challenge shifts to how we effectively explore and leverage these resources to study molecular properties. This paper presents an active learning approach for molecular discovery using deep kernel learning (DKL), demonstrated on the QM9 dataset. DKL links structural embeddings directly to properties, creating organized latent spaces that prioritize relevant property information. By iteratively recalculating embedding vectors in alignment with target properties, DKL uncovers concentrated maxima representing key molecular properties and reveals unexplored regions with potential for innovation. This approach underscores DKL’s potential in advancing molecular research and discovery.

Artificial neural networks↗

Bridging Hydrological Ensemble Simulation and Learning Using Deep Neural Operators

Ensemble-based simulation and learning (ESnL) has long been used in hydrology for parameter inference, but computational demands of process-based ESnL can be quite high. To address this issue, we propose a deep neural operator learning approach. Neural operators are generic machine learning algorithms that can learn functional mappings between infinite-dimensional spaces, providing a highly flexible tool for scientific machine learning. Our approach is built upon DeepONet, a specific deep neural operator, and is designed to address several common problems in hydrology, namely, model parameter estimation, prediction at ungaged locations, and uncertainty quantification. Here we demonstrate the effectiveness of our DeepONet-based workflow using an existing large model ensemble created for an eastern U.S. watershed that is instrumented with 10 streamflow gages. Results suggest DeepONet achieves high efficiency in learning an ML surrogate model from the model ensemble, with the modified Kling-Gupta Efficiency exceeding 0.9 on holdout test sets. Parameter inference, carried out using the trained DeepONet surrogate model and genetic algorithm, also yields robust results. Additionally, we formulate and train a separate DeepONet model for physics-informed, seq-to-seq streamflow forecasting, which further reduces biases in the pre-trained DeepONet surrogate model. While this study focuses primarily on a single watershed, our approach is general and may be extended to enable learning from model ensembles across multiple basins or models. Thus, this research represents a significant contribution to the application of hybrid machine learning in hydrology.

54 ENVIRONMENTAL SCIENCES↗

HDBind: encoding of molecular structure with hyperdimensional binary representations

Traditional methods for identifying “hit” molecules from a large collection of potential drug-like candidates rely on biophysical theory to compute approximations to the Gibbs free energy of the binding interaction between the drug and its protein target. These approaches have a significant limitation in that they require exceptional computing capabilities for even relatively small collections of molecules. Increasingly large and complex state-of-the-art deep learning approaches have gained popularity with the promise to improve the productivity of drug design, notorious for its numerous failures. However, as deep learning models increase in their size and complexity, their acceleration at the hardware level becomes more challenging. Hyperdimensional Computing (HDC) has recently gained attention in the computer hardware community due to its algorithmic simplicity relative to deep learning approaches. The HDC learning paradigm, which represents data with high-dimension binary vectors, allows the use of low-precision binary vector arithmetic to create models of the data that can be learned without the need for the gradient-based optimization required in many conventional machine learning and deep learning methods. This algorithmic simplicity allows for acceleration in hardware that has been previously demonstrated in a range of application areas (computer vision, bioinformatics, mass spectrometery, remote sensing, edge devices, etc.). To the best of our knowledge, our work is the first to consider HDC for the task of fast and efficient screening of modern drug-like compound libraries. We also propose the first HDC graph-based encoding methods for molecular data, demonstrating consistent and substantial improvement over previous work. We compare our approaches to alternative approaches on the well-studied MoleculeNet dataset and the recently proposed LIT-PCBA dataset derived from high quality PubChem assays. We demonstrate our methods on multiple target hardware platforms, including Graphics Processing Units (GPUs) and Field Programmable Gate Arrays (FPGAs), showing at least an order of magnitude improvement in energy efficiency versus even our smallest neural network baseline model with a single hidden layer. Our work thus motivates further investigation into molecular representation learning to develop ultra-efficient pre-screening tools. We make our code publicly available at https://github.com/LLNL/hdbind.

59 BASIC BIOLOGICAL SCIENCES↗

FloodPlanet: High-Resolution Commercial Imagery for Training and Validation of Deep Learning-Based Models of Inundation Extent

Flooding events are becoming increasingly frequent worldwide and are known to cause extensive damage. Public optical and radar satellite imagery can be used to detect large areas of inundation in rural areas, however, long revisit times and coarse spatial resolution limit applications for short-lived events and urban areas. Commercial constellations such as those operated by Planet offer increased spatial and temporal resolution and can supplement mapping efforts to provide more information to disaster response, relief, and mitigation efforts. Deep learning requires high quality labeled data for training across coincident sensors. The FloodPlanet dataset presented here contains labeled surface water for 18 events across the world based on Planetscope imagery with coincident Harmonized Landsat Sentinel-2 ( HLS) or Sentinel-1 and builds upon the previously existing Sen1Floods11, xBD, and NASA Sentinel-1 datasets. Sen1Floods11 includes 4,831 512x512 pixel overlapping tiles of coincident Sentinel-1 and Sentinel-2 data observing 11 flood events across the world from 2017-2019. The dataset contains a combination of automated and hand-labeled surface water for use in training and validation of inundation modeling efforts. The xBD dataset identifies flood-damaged buildings and indicates the scale of damage to each (none, minor, moderate, and major) from four flood events which occurred in the United States, India, Nepal, and Bangladesh from the same time period. The NASA dataset contains hand-labeled water bodies observed in Sentinel-1 imagery during five flood events within the 2017-2019 period. The effort presented here utilizes observations from these previously investigated flood events to generate labels of surface water at the 3-5m spatial resolution provided by Planetscope and facilitate the comparison between public and commercial data. A data pipeline was built which uses clustering algorithms to pick the most suitable overlapping chips between the public data and PlanetScope data for manual labeling. Labels were created manually using NASA’s ImageLabeler tool and include areas of high- and low-confidence water. The high confidence designation is reserved for areas of open, unobstructed water while low confidence is used for areas of suspected water beneath vegetation, clouds, or cloud shadows. Expected to be released in late 2022, the FloodPlanet dataset will include tiled imagery with a unique ID for each 1024x1024 pixel tile, 7 bands of HLS data, and high- and low-confidence flood labels in both shapefile and tiff formats. The authors will follow Spatial Temporal Access Catalog (STAC) guidelines to release FloodPlanet on the Radiant Earth ML hub, which hosts public datasets for machine learning.

Alexander Melancon↗

Scheduling Mission Reconfiguration for an Interferometry Synthetic Aperture Radar Using Deep Reinforcement Learning

This paper presents a method to intelligently adapt the baseline of a synthetic aperture radar based on Deep Rein- forcement Learning to help create plans for missions that use formation flight for Earth observation purposes. The main contribution of this paper is the initial results we have found from applying the tool to a toy mission: measuring the ver- tical structure of forests by using a synthetic aperture radar mounted on a formation of 7 satellites orbiting the Earth in a Sun Synchronous Orbit. We have found that with a reward function based on expected science return over time and fuel usage, the Deep Reinforcement Learning planner is able to create plans with positive scientific returns while minimizing fuel usage. We also find that fuel usage and collision avoid- ance planning is better done with traditional methods, as Deep Reinforcement Learning does not converge to optimal solutions.

Viros-i-Martin, Antoni↗

Chemical classification program synthesis using generative artificial intelligence

Accurately classifying chemical structures is essential for cheminformatics and bioinformatics, including tasks such as identifying bioactive compounds of interest, screening molecules for toxicity to humans, finding non-organic compounds with desirable material properties, or organizing large chemical libraries for drug discovery or environmental monitoring. However, manual classification is labor-intensive and difficult to scale to large chemical databases. Existing automated approaches either rely on manually constructed classification rules, or are deep learning methods that lack explainability. This work presents an approach that uses generative artificial intelligence to automatically write chemical classifier programs for classes in the Chemical Entities of Biological Interest (ChEBI) database. These programs can be used for efficient deterministic run-time classification of SMILES structures, with natural language explanations. The programs themselves constitute an explainable computable ontological model of chemical class nomenclature, which we call the ChEBI Chemical Class Program Ontology (C3PO). We validated our approach against the ChEBI database, and compared our results against deep learning models and a naive SMARTS pattern based classifier. C3PO outperforms the naive classifier, but does not reach the performance of state of the art deep learning methods. However, C3PO has a number of strengths that complement deep learning methods, including explainability and reduced data dependence. C3PO can be used alongside deep learning classifiers to provide an explanation of the classification, where both methods agree. The programs can be used as part of the ontology development process, and iteratively refined by expert human curators.

Artificial Intelligence↗

Advancing the Prediction of MS/MS Spectra Using Machine Learning

Tandem mass spectrometry (MS/MS) is an important tool for the identification of small molecules and metabolites where resultant spectra are most commonly identified by matching them with spectra in MS/MS reference libraries. While popular, this strategy is limited by the contents of existing reference libraries. In response to this limitation, various methods are being developed for the in silico generation of spectra to augment existing libraries. Recently, machine learning and deep learning techniques have been applied to predict spectra with greater speed and accuracy. Here, in this work, we investigate the challenges these algorithms face in achieving fast and accurate predictions on a wide range of small molecules. The challenges are often amplified by the use of generic machine learning benchmarking tactics, which lead to misleading accuracy scores. Curating data sets, only predicting spectra for sufficiently high collision energies, and working more closely with experimental mass spectrometrists are recommended strategies to improve overall prediction accuracy in this nuanced field.

47 OTHER INSTRUMENTATION↗

APSO-enhanced algebraic derivative estimation approach for real-time traffic flow prediction on critical road sections during wildfire evacuation

In rapid-onset disaster scenarios such as wildfires, evacuation traffic often significantly deviates from historical patterns, rendering conventional data-driven forecasting methods less effective. To address this challenge, we propose an improved algebraic derivative estimation (ADE) incorporating particle swarm optimization (PSO) for real-time traffic flow prediction. Our approach dynamically adjusts the ADE prediction time window at each step by minimizing a cost function based on the mean and variance of accumulated forecasting errors within the window, thereby balancing bias and variability. We evaluate the method using traffic data from the January 2025 California wildfires, focusing on key road segments critical for large-scale evacuations. The results demonstrate that our approach surpasses established machine learning and deep learning models—XGBoost, LSTM, and GRU—in predictive accuracy and maintains high computational efficiency. Notably, the proposed method eliminates the need for offline model training. Moreover, rapid PSO-based tuning enables real-time deployment, which provides a crucial advantage in scenarios where evacuation timings and road closures change dynamically. In conclusion, these findings highlight the benefits of the PSO-enhanced ADE framework for emergency traffic management, where rapid, data-sparse forecasts are essential for effective evacuation planning.

Algebraic derivative estimation↗

MHD, disruptions and control physics: Chapter 4 of the special issue: on the path to tokamak burning plasma operation

In this chapter, we review the progress in MHD stability, disruptions and control in magnetic fusion research that has occurred over the past (more than) one and a half decades since the publication by Hender et al in 2007 on the same topic as part of the update of ITER Physics Basis. During this period, remarkable progress has been achieved in the understanding of the basic physics and overall control of MHD instabilities through a wide spectrum of dedicated experiments, theory and modeling. The sawtooth activities are probably today one of the best understood of MHD events and very robust control schemes have been developed for reliable operation of tokamaks through core heating. Similarly, significant improvements have been achieved in understanding and control of neoclassical tearing modes, resistive wall modes or locked modes and their control through ECCD or error field control. The field of disruption prediction through application of artificial intelligence, machine learning or deep learning methods, which had already started at the time of the 2007 review, has progressed significantly due to general progress in these fields and application of newer, more sophisticated algorithms. However, although remarkable progress has been achieved in the field of Disruptions, their understanding, prediction, possible avoidance and mitigation still remain probably the most active fields of R&D globally in this field. This is especially because reactor grade machines like ITER and DEMO will be much less tolerant in respect of disruptions and runaway currents, and their occurrences must be either avoided altogether or minimized to an acceptable value without causing any significant hindrance to robust machine operations. This review is intended to present a broad spectrum of the R&D that has occurred in this field in support of ITER, which will also be of immense significance for all future machines, especially reactors like DEMO.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Active causal learning for decoding chemical complexities with targeted interventions

Abstract Predicting and enhancing inherent properties based on molecular structures is paramount to design tasks in medicine, materials science, and environmental management. Most of the current machine learning and deep learning approaches have become standard for predictions, but they face challenges when applied across different datasets due to reliance on correlations between molecular representation and target properties. These approaches typically depend on large datasets to capture the diversity within the chemical space, facilitating a more accurate approximation, interpolation, or extrapolation of the chemical behavior of molecules. In our research, we introduce an active learning approach that discerns underlying cause-effect relationships through strategic sampling with the use of a graph loss function. This method identifies the smallest subset of the dataset capable of encoding the most information representative of a much larger chemical space. The identified causal relations are then leveraged to conduct systematic interventions, optimizing the design task within a chemical space that the models have not encountered previously. While our implementation focused on the QM9 quantum-chemical dataset for a specific design task—finding molecules with a large dipole moment—our active causal learning approach, driven by intelligent sampling and interventions, holds potential for broader applications in molecular, materials design and discovery.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Using Machine Learning to Understand Electric and Hybrid Vehicles Ownership in Burdened and Nonburdened Communities

Transitioning to electric and hybrid vehicles (EHVs) for all communities is a pivotal step toward sustainable transportation and environmental conservation. This paper aims to understand the adoption of EHVs, focusing on burdened communities (BCs) in the United States. The EHV ownership-based analysis combines two datasets—behavioral data from the Puget Sound Regional Travel Survey integrated with BCs (Justice40) data covering transportation insecurity, environmental burden, social vulnerability, health vulnerability, and climate and disaster risk burden. After creating this unique database, descriptive analysis and modeling are used to analyze the data and predict EHV ownership in the future. Specifically, we use a new method that combines particle swarm optimization (PSO) with a stacking model named PSO-Stacking, which incorporates heterogeneous base learners of machine learning and deep learning. PSO applies a customized objective function to select the optimal hyperparameters for heterogeneous learners within the stacking model, effectively addressing challenges such as multicollinearity, data imbalance, nonlinearity, and overfitting. The proposed solution covers more accurate results than standard benchmark models for EHV ownership in BCs and non-BCs. In addition, the results of the PSO-Stacking method are explained using the local interpretable model-agnostic explanations technique. Results show a negative correlation between the BCs indicators, that is, higher transportation insecurity associated with lower EHV ownership. Furthermore, BCs have higher future climate risk scores, diesel particulate matter levels, and PM2.5 in the air than non-BCs because of higher conventional vehicle ownership. These communities are at higher risk and can benefit from electrification, EV infrastructure, and EV policies to address environmental challenges.

Aslam, Zeeshan [ORNL]↗

Materials Characterization, Prediction and Control Project: Summary Report on Data Analytics Framework

This report summarizes the activities performed under the data analytics Vertex in the Materials Characterization, Prediction and Control Project funded under laboratory directed research and development at Pacific Northwest National Laboratory. The data analytics Vertex developed models for associating global or local process parameters, microstructural features, and performance properties of friction-stir-processed 316L stainless steel plates. Statistical, machine learning, and deep learning models, as well as generative artificial intelligence approaches, were used to develop the associations between the process-structure-property data streams. These associations formed the basis for predicting global properties of parts manufactured under different process envelopes, providing a basis for predicting performance using data driven as well as physics-informed and physics-constrained approaches. Additionally, the associations were used to predict local process parameters and microstructural features of the product, predictive relationships that have the potential to form the basis of a control framework that could eventually modulate a friction-stir process to maintain product quality.

316L stainless steel↗

Applications Of Machine Learning to Gas Plume Analysis In Longwave Infrared Hyperspectral Images

Longwave infrared hyperspectral images can be used for gas plume analysis, as many gases exhibit distinct absorption features in this portion of the electromagnetic spectrum. In practice, accurately identifying weak gas signatures is difficult because the observed radiance is dominated by background radiance, which varies with material, temperature, and viewing conditions. Many gas plume analysis pipelines operate on single images, limiting the ability to leverage spatial and multi-view information that could enhance the analysis. The goal of this dissertation is to explore how machine learning and deep learning methods can complement classical approaches to improve gas plume identification in longwave infrared hyperspectral imagery, and to investigate the use of neural radiance fields for hyperspectral scene reconstruction.

3D Scene Reconstruction↗

Transforming Agricultural Productivity with AI-Driven Forecasting: Innovations in Food Security and Supply Chain Optimization

Global food security is under significant threat from climate change, population growth, and resource scarcity. This review examines how advanced AI-driven forecasting models, including machine learning (ML), deep learning (DL), and time-series forecasting models like SARIMA/ARIMA, are transforming regional agricultural practices and food supply chains. Through the integration of Internet of Things (IoT), remote sensing, and blockchain technologies, these models facilitate the real-time monitoring of crop growth, resource allocation, and market dynamics, enhancing decision making and sustainability. The study adopts a mixed-methods approach, including systematic literature analysis and regional case studies. Highlights include AI-driven yield forecasting in European hydroponic systems and resource optimization in southeast Asian aquaponics, showcasing localized efficiency gains. Furthermore, AI applications in food processing, such as plasma, ozone and Pulsed Electric Field (PEF) treatments, are shown to improve food preservation and reduce spoilage. Key challenges—such as data quality, model scalability, and prediction accuracy—are discussed, particularly in the context of data-poor environments, limiting broader model applicability. The paper concludes by outlining future directions, emphasizing context-specific AI implementations, the need for public–private collaboration, and policy interventions to enhance scalability and adoption in food security contexts.

99 GENERAL AND MISCELLANEOUS↗

Application of Machine Learning to Rotorcraft Health Monitoring

Machine learning is a powerful tool for data exploration and model building with large data sets. This project aimed to use machine learning techniques to explore the inherent structure of data from rotorcraft gear tests, relationships between features and damage states, and to build a system for predicting gear health for future rotorcraft transmission applications. Classical machine learning techniques are difficult, if not irresponsible to apply to time series data because many make the assumption of independence between samples. To overcome this, Hidden Markov Models were used to create a binary classifier for identifying scuffing transitions and Recurrent Neural Networks were used to leverage long distance relationships in predicting discrete damage states. When combined in a workflow, where the binary classifier acted as a filter for the fatigue monitor, the system was able to demonstrate accuracy in damage state prediction and scuffing identification. The time dependent nature of the data restricted data exploration to collecting and analyzing data from the model selection process. The limited amount of available data was unable to give useful information, and the division of training and testing sets tended to heavily influence the scores of the models across combinations of features and hyper-parameters. This work built a framework for tracking scuffing and fatigue on streaming data and demonstrates that machine learning has much to offer rotorcraft health monitoring by using Bayesian learning and deep learning methods to capture the time dependent nature of the data. Suggested future work is to implement the framework developed in this project using a larger variety of data sets to test the generalization capabilities of the models and allow for data exploration.

machine learning↗

Natural Language Understanding and Extraction of Flight Constraints Recorded in Letters of Agreement

This paper presents an automated information extraction and inference technique using natural language processing for extracting flight operational procedures and constraints embedded in heritage air traffic management documents. The extracted flight constraints can be digitized and fit into existing airspace information exchange models such as the Aeronautical Information Exchange Model (AIXM). This approach offers a digitized solution to disseminate airspace operating conditions to diverse air users and stakeholders in the National Airspace System (NAS). Furthermore, the digitized flight procedures can provide operational flexibility for emerging advanced air mobility providers and reduce traffic controller workload while maintaining current safety standards. To demonstrate this process, 1,972 Letters of Agreement (LOAs) have been selected for processing, named entity extraction, constraint identification and extraction. This dataset is derived from a subset of documents related to Air Route Traffic Control Centers (ARTCC) operations. We experimented with various traditional information extraction techniques, state-of-the-art machine learning and deep learning models to perform named entity recognition and pattern recognition on our dataset. We present the results from our experiments and demonstrate 99.0% F-1 score for named entity recognition, and a 96.6% accuracy for our entire workflow up to named entity recognition. We also discuss constraint definitions using generic patterned templates and extensions to this work in applying entity linking to digitally extracting relevant constraints.

Natural Language Processing↗

Natural Language Understanding and Extraction of Flight Constraints Recorded in Letters of Agreement

This paper presents an automated information extraction and inference technique using natural language processing for extracting flight operational procedures and constraints embedded in heritage air traffic management documents. The extracted flight constraints can be digitized and fit into existing airspace information exchange models such as the Aeronautical Information Exchange Model (AIXM). This approach offers a digitized solution to disseminate airspace operating conditions to diverse air users and stakeholders in the National Airspace System (NAS). Furthermore, the digitized flight procedures can provide operational flexibility for emerging advanced air mobility providers and reduce traffic controller workload while maintaining current safety standards. To demonstrate this process, 1,972 Letters of Agreement (LOAs) have been selected for processing, named entity extraction, constraint identification and extraction. This dataset is derived from a subset of documents related to Air Route Traffic Control Centers (ARTCC) operations. We experimented with various traditional information extraction techniques, state-of-the-art machine learning and deep learning models to perform named entity recognition and pattern recognition on our dataset. We present the results from our experiments and demonstrate 99.0% F-1 score for named entity recognition, and a 96.6% accuracy for our entire workflow up to named entity recognition. We also discuss constraint definitions using generic patterned templates and extensions to this work in applying entity linking to digitally extracting relevant constraints.

Natural Language Processing↗

NASA’s Prototype Spectral Water Inversion Processor and Emulator (SWIPE): Towards Global Coastal and Inland Water Quality and Algal Biodiversity Monitoring

Degradation of Earth’s inland water resources due to anthropogenic perturbations and climate anomalies at both local and global scales continues to place human health at substantial risk. There is now a growing necessity to develop pragmatic approaches that allow timely and effective extrapolation of local processes, to spatially resolved global products, and to promote operational and sustainable resource policy management. This presentation will provide updates on NASA’s prototype open-source aquatic modeling platform, Spectral Water Inversion Processor and Emulator (SWIPE), which is a comprehensive, multi-faceted modeling platform for both forward and inverse modeling of diverse aquatic ecosystems from the benthos to top-of-atmosphere (TOA). SWIPE provides a cohesive application which leverages recent advancements in particle modeling, Big Data analytics, and machine learning to develop a high-fidelity synthetic training ground for sensitivity studies and algorithm development for multispectral or upcoming hyperspectral missions. Some of the prominent features of SWIPE to be discussed include: 1. Advanced hyperspectral modeling of globally diverse algal and non-algal particles using a novel two-layer coated sphere scattering model and radiative transfer modeling, 2. Massive, highly detailed synthetic spectral libraries of Analysis-Ready-Data (ARD) which include spectral libraries of particle microphysics, water biogeophysical and optical properties, as well as surface and TOA reflectances at 1 nm resolution, 3. An ensemble of pre-built analytic, machine learning, and deep learning inversion algorithms for various water quality and biodiversity related retrieval parameters and uncertainty quantification, 4. Sensor-agnostic water quality inversion at wide ranging spatial and spectral resolutions including a codebase for seamless application in the Google Earth Engine and NASA Earth Exchange (NEX) for planetary scale analysis. SWIPE will be a fully open-source platform based in python with comprehensive documentation, tutorials, and options for distributed computing on high performance computing clusters or on single, local machines. Further, we will discuss how we envision SWIPE contributing towards a global analysis of coastal and inland water quality dynamics.

top-of-atmosphere (TOA)↗