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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 433 records · Page 24

Real-time machine-learning-driven control system of a deformable mirror for achieving aberration-free X-ray wavefronts

A neural-network machine learning model is developed to control a bimorph adaptive mirror to achieve and preserve aberration-free coherent X-ray wavefronts at synchrotron radiation and free electron laser beamlines. The controller is trained on a mirror actuator response directly measured at a beamline with a real-time single-shot wavefront sensor, which uses a coded mask and wavelet-transform analysis. The system has been successfully tested on a bimorph deformable mirror at the 28-ID IDEA beamline of the Advanced Photon Source at Argonne National Laboratory. It achieved a response time of a few seconds and maintained desired wavefront shapes (e.g., a spherical wavefront) with sub-wavelength accuracy at 20 keV of X-ray energy. This result is significantly better than what can be obtained using a linear model of the mirror’s response. The developed system has not been tailored to a specific mirror and can be applied, in principle, to different kinds of bending mechanisms and actuators.

47 OTHER INSTRUMENTATION↗

dGPredictor: Automated fragmentation method for metabolic reaction free energy prediction and de novo pathway design

Group contribution (GC) methods are conventionally used in thermodynamics analysis of metabolic pathways to estimate the standard Gibbs energy change ( Δ r G ′ o ) of enzymatic reactions from limited experimental measurements. However, these methods are limited by their dependence on manually curated groups and inability to capture stereochemical information, leading to low reaction coverage. Herein, we introduce an automated molecular fingerprint-based thermodynamic analysis tool called dGPredictor that enables the consideration of stereochemistry within metabolite structures and thus increases reaction coverage. dGPredictor has comparable prediction accuracy compared to existing GC methods and can capture Gibbs energy changes for isomerase and transferase reactions, which exhibit no overall group changes. We also demonstrate dGPredictor’s ability to predict the Gibbs energy change for novel reactions and seamless integration within de novo metabolic pathway design tools such as novoStoic for safeguarding against the inclusion of reaction steps with infeasible directionalities. To facilitate easy access to dGPredictor, we developed a graphical user interface to predict the standard Gibbs energy change for reactions at various pH and ionic strengths. The tool allows customized user input of known metabolites as KEGG IDs and novel metabolites as InChI strings ( https://github.com/maranasgroup/dGPredictor ).

59 BASIC BIOLOGICAL SCIENCES↗

Antimicrobial resistance and genomic characterization of Salmonella Dublin isolates in cattle from the United States

Salmonella enterica subspecies enterica serotype Dublin is a host-adapted serotype in cattle, associated with enteritis and systemic disease. The primary clinical manifestation of Salmonella Dublin infection in cattle, especially calves, is respiratory disease. While rare in humans, it can cause severe illness, including bacteremia, with hospitalization and death. In the United States, S . Dublin has become one of the most multidrug-resistant serotypes. The objective of this study was to characterize S . Dublin isolates from sick cattle by analyzing phenotypic and genotypic antimicrobial resistance (AMR) profiles, the presence of plasmids, and phylogenetic relationships. S . Dublin isolates (n = 140) were selected from submissions to the NVSL for Salmonella serotyping (2014–2017) from 21 states. Isolates were tested for susceptibility against 14 class-representative antimicrobial drugs. Resistance profiles were determined using the ABRicate with Resfinder and NCBI databases, AMRFinder and PointFinder. Plasmids were detected using ABRicate with PlasmidFinder. Phylogeny was determined using vSNP. We found 98% of the isolates were resistant to more than 4 antimicrobials. Only 1 isolate was pan-susceptible and had no predicted AMR genes. All S . Dublin isolates were susceptible to azithromycin and meropenem. They showed 96% resistance to sulfonamides, 97% to tetracyclines, 95% to aminoglycosides and 85% to beta-lactams. The most common AMR genes were: sulf2 and tetA (98.6%), aph(6)-Id (97.9%), aph(3’’)-Ib, (97.1%), floR (94.3%), and blaCMY-2 (85.7%). All quinolone resistant isolates presented mutations in gyr A. Ten plasmid types were identified among all isolates with IncA/C2, IncX1, and IncFII(S) being the most frequent. The S . Dublin isolates show low genomic genetic diversity. This study provided antimicrobial susceptibility and genomic insight into S . Dublin clinical isolates from cattle in the U.S. Further sequence analysis integrating food and human origin S . Dublin isolates may provide valuable insight on increased virulence observed in humans.

60 APPLIED LIFE SCIENCES↗

X-ray crystallographic and hydrogen deuterium exchange studies confirm alternate kinetic models for homolog insulin monomers

Despite the crucial role of various insulin analogs in achieving satisfactory glycemic control, a comprehensive understanding of their in-solution dynamic mechanisms still holds the potential to further optimize rapid insulin analogs, thus significantly improving the well-being of individuals with Type 1 Diabetes. Here, we employed hydrogen-deuterium exchange mass spectrometry to decipher the molecular dynamics of newly modified and functional insulin analog. A comparative analysis of H/D dynamics demonstrated that the modified insulin exchanges deuterium atoms faster and more extensively than the intact insulin aspart. Additionally, we present new insights derived from our 2.5 Å resolution X-ray crystal structure of modified hexamer insulin analog at ambient temperature. Furthermore, we obtained a distinctive side-chain conformation of the Asn3 residue on the B chain (AsnB3) by operating a comparative analysis with a previously available cryogenic rapid-acting insulin structure (PDB_ID: 4GBN). The experimental conclusions have demonstrated compatibility with modified insulin’s distinct cellular activity, comparably to aspart. Additionally, the hybrid structural approach combined with computational analysis employed in this study provides novel insight into the structural dynamics of newly modified and functional insulin vs insulin aspart monomeric entities. It allows further molecular understanding of intermolecular interrelations driving dissociation kinetics and, therefore, a fast action mechanism.

59 BASIC BIOLOGICAL SCIENCES↗

Utah FORGE 2020-2021 Geothermal Energy/EGS Survey and Results

The Utah FORGE project collaborated with the University of Utahs Department of Communication on a Capstone course during Fall Semester 2020. The course created a survey to gauge the general populations knowledge of geothermal energy and Enhanced Geothermal Systems (EGS). The survey was distributed through Qualtrics, an experience management company, in late 2020 and early 2021 to respondents in 11 western states (AZ, CA, CO, ID, MT, NM, NV, OR, UT, WA, WY). Approximately 1,000 responses were received. The Code Book (the consent form and the questions themselves) and the raw data results in a spreadsheet are included in the data resources.

15 GEOTHERMAL ENERGY↗

Utah FORGE 8-3637: Integrated Diagnostics for Interpreting Doublet Heat Sweep Efficiency - 2024 Annual Workshop Presentation

This is a presentation on the Integrated Diagnostics for Interpreting Doublet Heat Sweep Efficiency by Texas Tech University, presented by Smith Leggett. This video slide presentation discusses the ID squared technical objectives to develop and integrate diagnostic tools to determine (1) the number of fractures, (2) the uniformity of flow distribution, (3) heat exchange areas, and (4) heat efficiency. This presentation was featured in the Utah FORGE R&D Annual Workshop on August 15, 2024.

15 GEOTHERMAL ENERGY↗

FOSWEC v2: System identification and control testing at Hinsdale Wave Research Laboratory

This report summarizes the design and execution of a wave tank test of the floating oscillating surge wave energy converter (FOSWEC) in the O.H. Hinsdale Wave Research Laboratory Directional Wave Basin at Oregon State University. This device, which uses two "flaps" that pivot about a central platform when excited by waves, has a natural frequency within the range of the waves by which it is excited. The FOSWEC was originally considered to be a 1:33 scale device, however, for the current tests, no fixed relative scale is used (i.e., the WEC is considered to be scaled for the basin’s wave environment in which it operates). The primary goal of this test was to assess the degree to which previously developed modeling, experimentation, and control design methods could be applied to a broad range of wave energy converter designs. Testing was conducted to identify a dynamic model for the impedance and excitation behavior of the device. Using these models, a series of closed loop tests were conducted using a causal impedance matching controller. This report provides a brief description of the results, as well as a summary of the device and experimental design. The results show that the methods applied to this experimental device perform well and should be broadly applicable. The data collected during testing is compressed into FOSWEC.zip. Please refer to Appendix C (pages 61-63) of the test report for descriptions of each test ID corresponding to the compressed files.

16 TIDAL AND WAVE POWER↗

2013 California Vehicle Survey

The 2013 California Vehicle Survey (CVS) collected data on household and commercial vehicle usage, and on future vehicle purchases. ICF International conducted the survey on behalf of the California Energy Commission. Approximately 8,000 respondents, from California households and businesses, completed the survey. The household component of the CVS included a selection of households from the 2010-2012 California Household Travel Survey (CHTS), who had stated their intention to purchase a vehicle in the near future. Both household surveys used the same survey ID numbers enabling the integration of responses. The commercial vehicle component of the CVS—a stand-alone survey of commercial fleet owners in California—asked vehicle owners questions pertaining to economic and demographic attributes, current fleets, and preferences about planned vehicle purchases.

1Hz data↗

DOE EV Data Collection - Maintenance Data

Maintenance data includes information on maintenance performed on the electric vehicles, including preventive maintenance, service calls, and availability of the vehicles. The parameters collected, and their definitions, will vary due to the differences in maintenance tracking systems that exist between fleets. Parameter definitions are detailed in the data dictionary, and specific vehicle information is available in the vehicle attributes table. Vehicle ID can be used as a key between maintenance data and vehicle attribute tables. Data is being uploaded quarterly through 2023 and subject to change until the conclusion of the project.

32 ENERGY CONSERVATION, CONSUMPTION, AND UTILIZATI↗

DOE EV Data Collection - Facility Data

Facility data includes information on electricity consumption by larger-scale infrastructure, including buildings, solar arrays, and energy storage systems. Parameter definitions can be found in the data dictionary. If a connection between specific vehicle information and facility data exists, it will be available in the vehicle attributes table. Vehicle ID can be used as a key between vehicle data and vehicle attribute tables. Data is being uploaded quarterly through 2023 and subject to change until the conclusion of the project.

32 ENERGY CONSERVATION, CONSUMPTION, AND UTILIZATI↗

Raw Lidar and Camera Data Synchronized with Precipitation and Present Weather Data

As part of the sensor characterization task of the SMART 2.0 project, this dataset includes raw data from three spinning lidars ([Ouster OS2-128](https://ouster.com/products/scanning-lidar/os2-sensor/), [Velodyne Puck (VLP-16)](https://velodynelidar.com/products/puck/), and [Velodyne Ultra Puck (VLP-32)](https://velodynelidar.com/products/ultra-puck/)), one camera ([Mako G-319](https://www.alliedvision.com/en/camera-selector/detail/mako/g-319/)), and one present weather sensor ([Vaisala FD-70](https://www.vaisala.com/en/products/weather-environmental-sensors/forward-scatter-fd70)). All data were synchronized, with the log start time indicated in the file name (HHMMSS). The data can be filtered by date, log time (HHMMSS), sensor, frame ID, and weather classification. These data were gathered statically at the Argonne Testbed for Multiscale Observational Science (ATMOS). Two target stop signs were placed in view of the sensors to contribute a target for comparing sensor data under different conditions. The weather data for each day are stored in netCDF “.nc” files. The lidar data contain the X, Y, Z, intensity, reflectivity, and ring from Ouster OS2-128 rev6, Velodyne VLP-16, and Velodyne VLP-32 lidars. ![raw lidar image](LiDAR_pointcloud_ATMOS.png)

32 ENERGY CONSERVATION, CONSUMPTION, AND UTILIZATI↗

Depth-resolved soil data from DOE-LM Riverton Wyoming site, April-September 2017

Averaged (from 3 to 5 replicates) and QA/QC:d data for soil cores taken roughly every month in the period April 5 to September 13 in 2017 at a location close to DOE Legacy Management well 855 at the Riverton, Wyoming floodplain site. The groundwater at this site exhibits persistent U, Mo, and sulfate plumes and is one of the field sites in focus for the SLAC Groundwater Quality SFA program. Cores were separated into 5-20 cm segments based on soil horizonation and each segment was subsampled for microbial analyses (data available at the NCBI Single Read Archive (SRA) Database, https://www.ncbi.nlm.nih.gov/sra/, BioProject ID# PRJNA626616) in addition to the soil analyses included in this dataset. The soil analyses dataset includes aerobic and anaerobic respiration rate estimates (MicroResp method), water content estimates (on collected samples, not in situ), total C, N, S, Ca, K, Mg, Na, Fe, As, Mo, U, and organic-C concentrations, water extractable concentrations of the same elements, and HCl-extractable Fe(II) concentrations.There are four files included in this data package: metadataFile.csv, avgDataFile.csv, methodFile.csv, and RVT2017soilData.xlsx. The excel file contains the same information as the individual csv-files (in separate tabs).

54 ENVIRONMENTAL SCIENCES↗

Numerical Modeling Experiments of Combined Effects of Ice and Permafrost on Delta Morphodynamics

This dataset contains output from numerical model experiments to test the combined effects of ice thickness and permafrost erodibility on delta dynamics. All experiments were conducted using DeltaRCM, a reduced complexity cellular model. Details of the model setup and experiments are described in full in Piliouras et al., (in revision). This dataset contains results from a total of 48 experiments, representing 16 different experimental conditions, each of which was run in triplicate. There is a control run (3 total experiments) with no ice and no permafrost. We used permafrost erodibilities (here described as erodibility relative to that of non-permafrost, and therefore < 1) of 0.65, 0.8, and 0.95, where 0.95 represents permafrost being only 5% less erodible than non-permafrost. We used ice thicknesses of 0.5 m, 3 m, and 4.5 m in a 5 m deep basin. We conducted experiments for each possible combination of permafrost erodibility and ice thickness (9 conditions, 27 experiments). We also provide results for experiments with only ice or permafrost (6 conditions, 18 experiments). The excel table (csv file) provides the ice and permafrost conditions for each run ID. Zip files contain model outputs and other variables generated during analysis (see ReadMe file) as numpy arrays (.npy files), which can be accessed using python.

54 ENVIRONMENTAL SCIENCES↗

Microclimate observations associated with snowmelt experiment gradient sites, East River, Colorado, 2017 to 2020

The timing of snowmelt in mountain systems is a main driver of vegetation phenology and production, as well as recharge of soil moisture and ground water. Decreases in maximum snowpack and warmer spring temperatures have led to a higher frequency of early snowmelt. This study combines a natural elevation gradient with an experimental manipulation of snowmelt timing to assess the effect of earlier melt on hillslope and watershed ecohydrological processes. This data package includes csv files with plot and sub-plot level observations of soil temperature (SM_ST.csv), soil moisture (SM_SWC.csv), air temperature (SM_AirT.csv), and relative humidity (SM_rH.csv). The date range of this dataset includes a pre-treatment year (2017), two treatment years (2018 and 2019), and a post-treatment year (2020). Location IDs associated with this data package are: ER-LM, WG-UM, WG-LS, ER-US, and XX-AL. Related data packages include: “Colorado Elevation Gradient Snowmelt Manipulation Plant Phenology 2017-2018” and “Sensor-based phenology from snowmelt experiment gradient, East River, Colorado, 2017 to 2020”

54 ENVIRONMENTAL SCIENCES↗

Sensor-based phenology from snowmelt experiment gradient, East River, Colorado, 2017 to 2020

The timing of snowmelt is a critical cue for the initiation of growth in mountain meadow ecosystems and can also impact the duration and magnitude of plant production. High frequency observations of species-level phenology are time consuming and require a high degree of expertise, and publicly available remote sensing products lack the necessary temporal resolution to assess fine-scale growing season dynamics. Near-surface sensing methods provide a middle ground with high temporal frequency and tractable spatial scales (from sub-meter to hillslope scale). This data package includes csv files of Normalized Difference Vegetation Index (NDVI) timeseries (SM_NDVI_dailymax.csv) and phenological thresholds (SM_NDVI_summary.csv) for sub-plots (1m2) and Green Chromatic Coordinate (GCC) phenological thresholds (SM_GCC_summary.csv) at the plot scale (10m x 14m). Location IDs associated with this data package are: ER-LM, WG-UM, WG-LS, ER-US, and XX-AL. Related data packages include: “Microclimate observations associated with snowmelt experiment gradient sites, East River, Colorado, 2017 to 2020” and “Colorado Elevation Gradient Snowmelt Manipulation Plant Phenology 2017-2018”.

54 ENVIRONMENTAL SCIENCES↗

VotE-Dams: a compilation of global dams' locations and attributes (v1)

This dataset represents a compilation of two global and three USA-specific datasets of dam locations and their attributes. The major hurdle toward developing this compilation was the identification of duplicates within the source datasets, especially given the variable precision of dam location coordinates. The most immediately-useful product in this dataset is a spreadsheet (VotE-Dams_v1.csv) that documents the unique dams found across the datasets, their coordinates, and their ids within the respective source datasets. We do not reproduce the source datasets (GRaND, GOODD, GeoDAR, NID, and EHA) here, but their download locations are provided in the README files ('Overview' tab). Some of the source datasets are provided as shapefiles, which require geospatial data software to open (e.g. QGIS/ArcGIS for graphical display, geopandas for Python, rgdal for R, many others freely available). The provided README documents metadata of the source datasets and provides attribute-linking information (i.e. matches attributes among various source datasets that contain the same, or similar, information but have different names). Note that the README is provided as both .xslx and a collection of .csvs (one per tab in the .xslx file). We suggest using the .xlsx version that preserves images, formatting, and sheets. .xlsx files can be viewed using (free) Google Docs or Microsoft Excel.Finally, we provide Technical Documentation.pdf that describes the procedures used to identify unique and duplicate dams.The title of this dataset refers to our 'Veins of the Earth' (VotE) project, which seeks to provide a flexible, scale-free representation of the Earth's river networks. Dams are a critical component of VotE as they heavily influence flows throughout river networks.

54 ENVIRONMENTAL SCIENCES↗

16S and ITS Amplicon Sequencing Fastq files and metadata from PARCHED Panama Tropical Forest soils, 2019-2020,

Model projections predict tropical forests will experience longer periods of drought and more intense precipitation cycles under a changing climate. Such transitions have implications for structure-function relationships within microbial communities. We examine how chronic drying might reshape prokaryotic and fungal communities across four lowland forests in Panama with a wide variation in mean annual precipitation and soil fertility. Four sites were established across a 1000 mm span in mean annual precipitation (2335 to 3300 mm). We expected microbial communities at sites with lower MAP to be less sensitive to chronic drying than sites with higher MAP; while fungal communities to be more resistant to disturbance than prokaryotes. At each location, partial throughfall exclusion structures were established over 10 x 10 m plots to reduce direct precipitation input. Raw demultiplexed sequences (bacteria, archaea, fungal) from soil samples taken from PARCHED Panama Tropical Forest throughfall exclusion experiments. Files that contain 16S are sequences from prokaryotes, ITS indicates sequences from fungi. Compressed fastq files are contained in Field_PARCHED_ITS_fastq_2020.zip, Field_PARCHED_ITS_fastq_2019.zip, Field_PARCHED_16S_fastq_2020.zip, Field_PARCHED_16S_fastq_2019.zip.There are four sites across the isthmus of Panama, each with 4 control and 4 exclusion plots. Throughfall exclusion shelters were built to intercept 50% of throughfall precipitation that hits the soil. Samples were taken on May 2019 and Jan 2020 from 0-10 cm and 10-20 cm depth approximately 9 and 18 months after shelter installation. Metadata and sample IDs for fastq files for 2019 sampling are within Field_PARCHED_Metadata_2019_ITS.csv and Field_PARCHED_Metadata_2019_16S.csv. The metadata for both 16S and ITS fastq files for January 2020 is included in Field_PARCHED_Metadata_2020.csv. No data processing or QA/QC was done on the raw data. Data processing example provided in R notebook file.

54 ENVIRONMENTAL SCIENCES↗

Coastal typologies and surface and subsurface characteristics of the Alaskan Beaufort Sea Coast

This dataset was generated to classify the Alaskan Beaufort Sea Coast (ABSC) into a set of distinct coastal typologies, to understand the surface and subsurface characteristics and variability of the ABSC, and to quantify relationships between these characteristics and historical rates of shoreline change. This geospatial dataset contains two csv files of points along the ABSC at a 50 m spacing, one for points sheltered by a barrier island and one for points exposed to the open ocean. Each point has a lat/lon location, and we have attributed to each point average values for elevation, historical long-term shoreline change rates, shoreline orientation, landcover, mean annual ground temperature, geomorphic unit, lithology, geology, ecological landscape unit, maximum thaw settlement potential, massive ice content, and segregated ice content. Each point is also assigned to one of 16 coastal typologies, determined by a hierarchical clustering algorithm on the elevation, shoreline change, orientation, and ground temperature data. There are 9 sheltered typologies and 7 exposed typologies, identified by an integer label in the last column of each csv file. The other two csv files contain the integer IDs and classes for the landcover and geomorphology datasets.

54 ENVIRONMENTAL SCIENCES↗