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Planetary Geologic Mapping Handbook - 2009

Geologic maps present, in an historical context, fundamental syntheses of interpretations of the materials, landforms, structures, and processes that characterize planetary surfaces and shallow subsurfaces (e.g., Varnes, 1974). Such maps also provide a contextual framework for summarizing and evaluating thematic research for a given region or body. In planetary exploration, for example, geologic maps are used for specialized investigations such as targeting regions of interest for data collection and for characterizing sites for landed missions. Whereas most modern terrestrial geologic maps are constructed from regional views provided by remote sensing data and supplemented in detail by field-based observations and measurements, planetary maps have been largely based on analyses of orbital photography. For planetary bodies in particular, geologic maps commonly represent a snapshot of a surface, because they are based on available information at a time when new data are still being acquired. Thus the field of planetary geologic mapping has been evolving rapidly to embrace the use of new data and modern technology and to accommodate the growing needs of planetary exploration. Planetary geologic maps have been published by the U.S. Geological Survey (USGS) since 1962 (Hackman, 1962). Over this time, numerous maps of several planetary bodies have been prepared at a variety of scales and projections using the best available image and topographic bases. Early geologic map bases commonly consisted of hand-mosaicked photographs or airbrushed shaded-relief views and geologic linework was manually drafted using mylar bases and ink drafting pens. Map publishing required a tedious process of scribing, color peel-coat preparation, typesetting, and photo-laboratory work. Beginning in the 1990s, inexpensive computing, display capability and user-friendly illustration software allowed maps to be drawn using digital tools rather than pen and ink, and mylar bases became obsolete. Terrestrial geologic maps published by the USGS now are primarily digital products using geographic information system (GIS) software and file formats. GIS mapping tools permit easy spatial comparison, generation, importation, manipulation, and analysis of multiple raster image, gridded, and vector data sets. GIS software has also permitted the development of project-specific tools and the sharing of geospatial products among researchers. GIS approaches are now being used in planetary geologic mapping as well (e.g., Hare and others, 2009). Guidelines or handbooks on techniques in planetary geologic mapping have been developed periodically (e.g., Wilhelms, 1972, 1990; Tanaka and others, 1994). As records of the heritage of mapping methods and data, these remain extremely useful guides. However, many of the fundamental aspects of earlier mapping handbooks have evolved significantly, and a comprehensive review of currently accepted mapping methodologies is now warranted. As documented in this handbook, such a review incorporates additional guidelines developed in recent years for planetary geologic mapping by the NASA Planetary Geology and Geophysics (PGG) Program s Planetary Cartography and Geologic Mapping Working Group s (PCGMWG) Geologic Mapping Subcommittee (GEMS) on the selection and use of map bases as well as map preparation, review, publication, and distribution. In light of the current boom in planetary exploration and the ongoing rapid evolution of available data for planetary mapping, this handbook is especially timely.

Tanaka, K. L.↗

Direct imaging of extra-solar planetary systems with the Circumstellar Imaging Telescope (CIT)

In a joint study conducted by the Jet Propulsion Laboratory and the Perkin-Elmer Corporation it was found that an earth orbital, 1.5 meter diameter low scattered light coronagraphic telescope can achieve a broad range of scientific objectives including the direct detection of Jupiter-sized planets around the nearby stars. Recent major advances in the understanding of coronagraphic performance and in the field of super smooth mirror fabrication allow such an instrument to be designed and built within current technology. Such a project, called the Circumstellar Imaging Telescope (CIT), is currently being proposed.

Terrile, Richard J.↗

The Mapping X-Ray Fluorescence Spectrometer (MAPX)

MapX will provide elemental imaging at ≤100 micron spatial resolution over 2.5 X 2.5 centimeter areas, yielding elemental chemistry at or below the scale length where many relict physical, chemical, and biological features can be imaged and interpreted in ancient rocks. MapX is a full-frame spectroscopic imager positioned on soil or regolith with touch sensors. During an analysis, an X-ray source (tube or radioisotope) bombards the sample surface with X-rays or αlpha-particles / gamma rays, resulting in sample X-ray Fluorescence (XRF). Fluoresced X-rays pass through an X-ray lens (X-ray μ-Pore Optic, "MPO") that projects a spatially resolved image of the X-rays onto a CCD. The CCD is operated in single photon counting mode so that the positions and energies of individual photons are retained. In a single analysis, several thousand frames are stored and processed. A MapX experiment provides elemental maps having a spatial resolution of ≤100 micron and quantitative XRF spectra from Regions of Interest (ROI) 2 centimers ≤ x ≤ 100 micron. ROI are compared with known rock and mineral compositions to extrapolate the data to rock types and putative mineralogies. The MapX geometry is being refined with ray-tracing simulations and with synchrotron experiments at SLAC. Source requirements are being determined through Monte Carlo modeling and experiment using XMIMSIM [1], GEANT4 [2] and PyMca [3] and a dedicated XRF test fixture. A flow-down of requirements for both tube and radioisotope sources is being developed from these experiments. In addition to Mars lander and rover missions, MapX could be used for landed science on other airless bodies (Phobos/Deimos, Comet nucleus, asteroids, the Earth's moon, and the icy satellites of the outer planets, including Europa.

Blake, David↗

Characterizing natural fractures and sub-seismic faults for well completion of Marcellus shale in the MSEEL Consortium project, West Virginia, USA

The Middle Devonian Marcellus shale play has emerged as a major world-class hydrocarbon accumulation and represents one of the largest and most prolific shale plays in the world. According to many outcrop studies in the region, natural fractures are well developed in the Marcellus Shale. However, evaluating fractures in the subsurface is often a significant challenge due to a lack of sufficient data. Therefore, in the Marcellus Shale Energy and Environment Laboratory (MSEEL) consortium project, significant efforts have been made to acquire high-quality image logs in the Marcellus laterals. The project provided tremendous opportunities to characterize the natural fractures and sub-seismic faults and to evaluate their impact on well stimulation. In this study, about 70,000 ft of acquired high-resolution logging while drilling (LWD) acoustic images from five long laterals located in Monongalia County, West Virginia, were processed and interpreted. In addition, the study used high-quality micro-resistivity images from a pilot well, allowing the evaluation of natural fractures in the entire Marcellus vertical sequence. Based on the available acoustic images, the natural fractures were classified into three basic categories: high-amplitude fractures, low-amplitude fractures, and faults. Further, larger open fractures can also be determined when a low-amplitude fracture is evident on caliper images. The fractures in the Marcellus usually have a medium to high angle dip; however, multiple fracture sets in terms of strike orientation were clearly observed in all the laterals. The fracture set with a strike at NE-SW (or 60-240 deg) seems to be the predominant one in all the wells. A few other sets, including those with N-S, NWW-SEE, and E-W strikes, were also observed. Several sub-seismic faults, with mostly a low dip angle and a NE-SW strike, have also been seen in two of the laterals. The fracture density is variable across all the laterals, ranging from very low (or none) to very high (up to 5 fractures per ft). The average fracture density for all the laterals is about 1 fracture per 10 ft. In the vertical sequence, the natural fracture development showed a clear preference for shale or shaly facies over carbonate-rich or thin limestone layers. The interpreted fracture and fault data were used as input data for the stimulation design with the purpose of better understanding the fractures’ impact on well stimulation. Production data from the laterals were also used to evaluate the natural fractures’ influence on well performance. The quality image database and the consistent interpretation results for the entire project enabled a systematic approach to characterizing fractures and, more importantly, to evaluating the impact of fractures on well stimulation and production.

03 NATURAL GAS↗

3D Tomography and Image Processing Using Fast Neutrons Final Report

This document is the final report for project OR16-ML-3DTomography-PD3Jb, “3D Tomography and Image Processing Using Fast Neutrons.” This project was motivated by the availability of three-dimensional (3D) tomographic neutron transmission and induced-reaction data following the development of associated-particle imaging (API) systems with two-dimensional (2D) or “area” neutron detectors such as the Advanced Portable Neutron Imaging System, which is capable of simultaneous measurement of transmission and induced-reaction neutrons.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

MOLA-Based Landing Site Characterization

The Mars Global Surveyor (MGS) Mars Orbiter Laser Altimeter (MOLA) data provide the basis for site characterization and selection never before possible. The basic MOLA information includes absolute radii, elevation and 1 micrometer albedo with derived datasets including digital image models (DIM's illuminated elevation data), slopes maps and slope statistics and small scale surface roughness maps and statistics. These quantities are useful in downsizing potential sites from descent engineering constraints and landing/roving hazard and mobility assessments. Slope baselines at the few hundred meter level and surface roughness at the 10 meter level are possible. Additionally, the MOLA-derived Mars surface offers the possibility to precisely register and map project other instrument datasets (images, ultraviolet, infrared, radar, etc.) taken at different resolution, viewing and lighting geometry, building multiple layers of an information cube for site characterization and selection. Examples of direct MOLA data, data derived from MOLA and other instruments data registered to MOLA arc given for the Hematite area.

Duxbury, T. C.↗

A one-megapixel image acquisition and processing system for solar oscillation studies

The 1-Mpixel image acquisition and processing system that has been installed at the Mt. Wilson observatory as part of the development effort for the NASA/ESA Solar Oscillations Imager Experiment of the projected Heliospheric Observatory mission is discussed. The system encompasses a high speed CCD camera with a 1024 x 1024-pixel virtual phase chip array, yielding a readout rate of about 800,000 pixels/sec; this allows the entire Mpixel array to be read out in just over 1 sec. The camera is interfaced with a floating point array processor that integrates several successive exposures from the CCD camera and differences selected pairs of integrated images. The system is currently being used to record and difference narrowband images of the sun.

Rhodes, Edward J., Jr.↗

Improving the accessibility and transferability of machine learning algorithms for identification of animals in camera trap images: MLWIC2

Motion-activated wildlife cameras (or “camera traps”) are frequently used to remotely and noninvasively observe animals. The vast number of images collected from camera trap projects has prompted some biologists to employ machine learning algorithms to automatically recognize species in these images, or at least filter-out images that do not contain animals. These approaches are often limited by model transferability, as a model trained to recognize species from one location might not work as well for the same species in different locations. Furthermore, these methods often require advanced computational skills, making them inaccessible to many biologists. We used 3 million camera trap images from 18 studies in 10 states across the United States of America to train two deep neural networks, one that recognizes 58 species, the “species model,” and one that determines if an image is empty or if it contains an animal, the “empty-animal model.” Our species model and empty-animal model had accuracies of 96.8% and 97.3%, respectively. Furthermore, the models performed well on some out-of-sample datasets, as the species model had 91% accuracy on species from Canada (accuracy range 36%–91% across all out-of-sample datasets) and the empty-animal model achieved an accuracy of 91%–94% on out-of-sample datasets from different continents. Our software addresses some of the limitations of using machine learning to classify images from camera traps. By including many species from several locations, our species model is potentially applicable to many camera trap studies in North America. We also found that our empty-animal model can facilitate removal of images without animals globally. We provide the trained models in an R package (MLWIC2: Machine Learning for Wildlife Image Classification in R), which contains Shiny Applications that allow scientists with minimal programming experience to use trained models and train new models in six neural network architectures with varying depths.

59 BASIC BIOLOGICAL SCIENCES↗

Adaptive machine learning for time-varying systems: low dimensional latent space tuning

Machine learning (ML) tools such as encoder-decoder convolutional neural networks (CNN) can represent incredibly complex nonlinear functions which map between combinations of images and scalars. For example, CNNs can be used to map combinations of accelerator parameters and images which are 2D projections of the 6D phase space distributions of charged particle beams as they are transported between various particle accelerator locations. Despite their strengths, applying ML to time-varying systems, or systems with shifting distributions, is an open problem, especially for large systems for which collecting new data for re-training is impractical or interrupts operations. Particle accelerators are one example of large time-varying systems for which collecting detailed training data requires lengthy dedicated beam measurements which may no longer be available during regular operations. We present a novel method of adaptive ML for time-varying systems. Our approach is to map very high (N ≈ 100k) dimensional inputs (a combination of scalar parameters and images) into the low dimensional (N ≈ 2) latent space at the output of the encoder section of an encoder-decoder CNN. We then actively tune the low dimensional latent space-based representation of complex system dynamics by the addition of an adaptively tuned feedback vector directly before the decoder sections builds back up to our image-based high-dimensional phase space density representations. This method allows us to learn correlations within and to quickly tune the characteristics of incredibly large parameter space systems and to track their evolution in real time based on feedback without massive new data sets for re-training. We demonstrate that our method can accurately predict and track the phase space of charged particle beams at various locations in a particle accelerator by adaptively adjusting in real-time while the unknown input beam distribution of the accelerator is changing in shape, charge, and offset and while the RF system of the accelerator itself is also changing in an unpredictable way. For FACET-II we demonstrate that such an approach has the potential to use transverse deflecting cavity and energy spread spectrum beam measurements to accurately predict 2D projections of the 6D phase space of the electron beam at the plasma wakefield acceleration interaction point where such diagnostics are unavailable.

47 OTHER INSTRUMENTATION↗

Microwave Imaging on Metal Objects

This final report for the project discusses the attempts to model, using different methods, microwave image reconstruction. Maximum Entropy Method was not successful. Attempts to use Singular Value Decomposition (SVD) got some good results after initial failure. SVD is based upon a theory of linear algebra, to the effect that any M X N Matrix A whose number of rows M is greater than or equal to its number of columns, N can be written as the product of an M X N column-orthogonal matrix U, an N X N diagonal Matrix, W, with m positive or zero elements (the singular values) and the transposition of an N X N orthogonal matrix V. In microwave imaging, the scattered fields can be expressed by the induced current distribution. The SVD method required more contiguous computer memory than was available. Work was also done on the Conjugate Gradient Method (CGM), which didn't work well when tried earlier. It was found that separation of the imaginary part and the real part during calculation may work. This work was considered incomplete as of the end of the grant period.

Tolliver, C. L.↗

Tomographic optical emission spectroscopy of an atmospheric pressure plasma jet and surface ionization waves on planar and structured surfaces

Here in this paper, an approach for 3D plasma structure diagnostics using tomographic optical emission spectroscopy (Tomo-OES) of a nanosecond pulsed atmospheric pressure plasma jet (APPJ) is presented. In contrast to the well-known Abel inversion, Tomo-OES does not require cylindrical symmetry to recover 3D distributions of plasma light emission. Instead, many 2D angular projections are measured with intensified cameras and the multiplicative algebraic reconstruction technique is used to recover the 3D distribution of light emission. This approach solves the line-of-sight integration problem inherent to optical diagnostics, allowing recovery of localized OES information within the plasma that can be used to better infer plasma parameters within complex plasma structures. Here, Tomo-OES was applied to investigate an APPJ operated with helium in ambient air and impinging on planar and structured dielectric surfaces. Surface charging caused the guided streamer from the APPJ to transition to a surface ionization wave (SIW) that propagated along the surface. The SIW experienced variable geometrical and electrical material properties as it propagated, leading to 3D configurations that were non-symmetric and spatially complex. Light emission from He, N$_2^+$, and N2 were imaged at ten angular projections and the respective time-resolved 3D emission distributions in the plasma were then reconstructed. The spatial resolution of each tomographic reconstruction was 7.4 µm and the temporal resolution was 5 ns, sufficient to observe the guided streamer and the effects of the structured surface on the SIW. Emission from He showed the core of the jet and emission from N$_2^+$ and N2 indicated effects of entrainment of ambient air. Penning ionization of N2 created a ring or outer layer of N$_2^+$ that spatially converged to form the 'plasma bullet' or spatially diverged across a surface as part of a SIW. The SIW entered trenches of size 150 µm, leading to decreases in plasma light emission in regions above the trenches. The plasma light emission was higher in some regions with trenches, possibly due to effects of field enhancement.

plasma interactions with complex surfaces↗

Hyperspectral Light Sheet Raman Imaging of Leaf Metabolism (Final Report)

This final technical report details the accomplishment and findings of a project that developed technology related to imaging metabolic processes in plants. The report gives technical details of the design, construction and characterization of a Raman microscope system capable of identifying chemical species using the wavelength shifts of scattered excitation light. Some of the unique aspects of the design include: use of a Bessel beam excitation source, which allow long excitation lines that are resistant to scattering in complex media such as plants; excitation at 785 nm to avoid fluorescence emission that can occur in photosynthetic organisms; and a flat optical design that makes construction and alignment significantly simpler. This project also used stable isotope labeling to look at photorespiratory flux in the leaves of three different types of plants that have different photosynthesis pathways. Gas chromatography–mass spectrometry was used to look at which metabolites and amino acids had altered oxygen, carbon and hydrogen uptake under various conditions of environmental oxygen. This generated a rich data set that is being further analyzed to understand metabolic pathways in plants. This project also used the natural fluorescence in sorghum and rice to conduct an extensive experiment across different developmental stages. Spectral differences were identified at most of the developmental stages and these can be attributed to differential pigment and pigment-protein complexes present in different relative abundances as the plant develops.

09 BIOMASS FUELS↗

Imaging the electron charge density in monolayer MoS 2 at the Ångstrom scale

Four-dimensional scanning transmission electron microscopy (4D-STEM) has recently gained widespread attention for its ability to image atomic electric fields with sub-Ångstrom spatial resolution. These electric field maps represent the integrated effect of the nucleus, core electrons and valence electrons, and separating their contributions is non-trivial. In this paper, we utilized simultaneously acquired 4D-STEM center of mass (CoM) images and annular dark field (ADF) images to determine the projected electron charge density in monolayer MoS 2 . We evaluate the contributions of both the core electrons and the valence electrons to the derived electron charge density; however, due to blurring by the probe shape, the valence electron contribution forms a nearly featureless background while most of the spatial modulation comes from the core electrons. Our findings highlight the importance of probe shape in interpreting charge densities derived from 4D-STEM and the need for smaller electron probes.

36 MATERIALS SCIENCE↗

Mapping project on land use changes in the carboniferous region of Santa Catarina

The utilization of remote sensing data for monitoring land use changes by means of digital image analysis is described. The following data were utilized: LANDSAT data from September 4, 1975, April 24, 1978, and September 8, 1981; LANDSAT paper photography data; area IV color photographs; IBGE topography maps, and auxiliary data about the Brazilian state of Santa Catarina. Three kinds of analyses of digital images were carried out. The project identified and mapped major classes of land use areas including urban areas, coal deposits, agricultural areas, forests, lakes, and flood plains. Five areas directly affected by coal exploration southeast of Santa Catarina are identified and described. In addition, the classification system used for organizing data about land cover in a hierarchical arrangement is presented. The project made use of two remote sensing data sources: data of MSS spectral (Mulitspectral Scanner System)/LANDSAT on a scale of 1:100,000 with approximately 80 m resolution, and infrared color aerial photographs on a scale of 1:45,000 with approximately 5 m resolution. Therefore, the classification system included three levels, two selected to be compatible with aerial photography data and the third to conform to the resolution of MSS/LANDSAT.

Valeriano, D. D.↗

Smart quantum statistical imaging beyond the Abbe-Rayleigh criterion

The wave nature of light imposes limits on the resolution of optical imaging systems. For over a century, the Abbe-Rayleigh criterion has been utilized to assess the spatial resolution limits of imaging instruments. Recently, there has been interest in using spatial projective measurements to enhance the resolution of imaging systems. Unfortunately, these schemes require a priori information regarding the coherence properties of “unknown” light beams and impose stringent alignment conditions. Here, we introduce a smart quantum camera for superresolving imaging that exploits the self-learning features of artificial intelligence to identify the statistical fluctuations of unknown mixtures of light sources at each pixel. This is achieved through a universal quantum model that enables the design of artificial neural networks for the identification of photon fluctuations. Our protocol overcomes limitations of existing superresolution schemes based on spatial mode projections, and consequently provides alternative methods for microscopy, remote sensing, and astronomy.

77 NANOSCIENCE AND NANOTECHNOLOGY↗

Mapping Glacier Basal Sliding Applying Machine Learning

During the RESOLVE project (“High-resolution imaging in subsurface geophysics: development of a multi-instrument platform for interdisciplinary research”), continuous surface displacement and seismic array observations were obtained on Glacier d’Argentière in the French Alps for 35 days in May 2018. The data set is used to perform a detailed study of targeted processes within the highly dynamic cryospheric environment. In particular, the physical processes controlling glacial basal motion are poorly understood and remain challenging to observe directly. Especially in the Alpine region for temperate based glaciers where the ice rapidly responds to changing climatic conditions and thus, processes are strongly intermittent in time and heterogeneous in space. Spatially dense seismic and Global Positioning System (GPS) measurements are analyzed applying machine learning to gain insight into the processes controlling glacial motions of Glacier d’Argentière. Using multiple bandpass-filtered copies of the continuous seismic waveforms, we compute energy-based features, develop a matched field beamforming catalog and include meteorological observations. Features describing the data are analyzed with a gradient boosting decision tree model to directly estimate the GPS displacements from the seismic noise. We posit that features of the seismic noise provide direct access to the dominant parameters that drive displacement on the highly variable and unsteady surface of the glacier. The machine learning model infers daily fluctuations and longer term trends. The results show on-ice displacement rates are strongly modulated by activity at the base of the glacier. The techniques presented provide a new approach to study glacial basal sliding and discover its full complexity.

58 GEOSCIENCES↗

Programs and Code for Geothermal Exploration Artificial Intelligence

The scripts below are used to run the Geothermal Exploration Artificial Intelligence developed within the "Detection of Potential Geothermal Exploration Sites from Hyperspectral Images via Deep Learning" project. It includes all scripts for pre-processing and processing, including: - Land Surface Temperature K-Means classifier - Labeling AI using Self Organizing Maps (SOM) - Post-processing for Permanent Scatterer InSAR (PSInSAR) analysis with SOM - Mineral marker summarizing - Artificial Intelligence (AI) Data splitting: creates data set from a single raster file - Artificial Intelligence Model: creates AI from a single data set, after splitting in Train, Validation and Test subsets - AI Mapper: creates a classification map based on a raster file

15 GEOTHERMAL ENERGY↗

Elementary Particle Interactions (Final Technical Report)

Neutrinos provide a promising window to probe a wide range of fundamental physics. The past two decades have brought several remarkable neutrino-related discoveries indicating that one may answer the most sought after question of our matter dominated universe from within the neutrino sector. The global neutrino physics program is currently focused on studying neutrino oscillations, and to understand the implications of this phenomena on the evolution of the universe. Addressing all of these open questions and completing the story of neutrino oscillations requires technological advances in neutrino detection. Liquid argon time projection chambers (LArTPCs) are imaging detectors that offer fine-grained tracking, calorimetry and scalability, and are increasingly favored for the next generation of large neutrino detectors. Through leading technical and scientific roles on MicroBooNE, Short-Baseline Near Detector (SBND) and the Deep Underground Neutrino Experiment (DUNE) LArTPC neutrino experiments, the research program supported through this funding has significantly advanced the understanding of neutrino properties along with technical development of LArTPCs for both short- and long-baseline neutrino oscillations physics.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗