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At least 433 records · Page 24

A Practical Framework for Simulating Time-Resolved Spectroscopy Based on a Real-Time Dyson Expansion

Time-resolved spectroscopy is a powerful tool for probing electron dynamics in molecules and solids, revealing transient phenomena on subfemtosecond time scales. The interpretation of experimental results is often enhanced by parallel numerical studies, which can provide insight and validation for experimental hypotheses. However, developing a theoretical framework for simulating time-resolved spectra remains a significant challenge. The most suitable approach involves the many-body nonequilibrium Green's function formalism, which accounts for crucial dynamical many-body correlations during time evolution. While these dynamical correlations are essential for observing emergent behavior in time-resolved spectra, they also render the formalism prohibitively expensive for large-scale simulations. Substantial effort has been devoted to reducing this computational cost─through approximations and numerical techniques─while preserving the key dynamical correlations. The ultimate goal is to enable first-principles simulations of time-dependent systems ranging from small molecules to large, periodic, multidimensional solids. Here, in this perspective, we outline key challenges in developing practical simulations for time-resolved spectroscopy, with a particular focus on Green's function methodologies. We highlight a recent advancement toward a scalable framework: the real-time Dyson expansion (RT-DE) [Phys. Rev. Lett. 2024, 133, 226902]. We introduce the theoretical foundation of RT-DE and discuss strategies for improving scalability, which have already enabled simulations of system sizes beyond the reach of previous fully dynamical approaches. We conclude with an outlook on future directions for extending RT-DE to first-principles studies of dynamically correlated, nonequilibrium systems.

Reeves, Cian C. [Univ. of California, Santa Barbar↗

Optimal, centralized dynamic curbside parking space zoning

In this paper we formulate a dynamic mixed integer program for optimally zoning curbside parking spaces subject to transportation policy-inspired constraints and regularization terms. First, we illustrate how given some objective of curb zoning valuation as a function of zone type (paid parking, bus stop, etc.), dynamically rezoning involves unrolling this optimization program over a fixed time horizon. Second, we implement two different solution methods given an example curb zoning valuation. In the first method, we solve long horizon dynamic zoning problems via approximate dynamic programming. In the second method, we employ Dantzig-Wolfe decomposition to break-up the mixed-integer program into a master problem and several sub-problems that can be solved in parallel. This speeds up the computational solve-time of the MIP considerably. We present simulation results and comparisons of the different employed techniques on vehicle arrival-rate data obtained for a neighborhood in downtown Seattle, Washington, USA.

Nazir, Mohammad Nawaf↗

SHARP: a distributed GPU-based ptychographic solver

Ever brighter light sources, fast parallel detectors and advances in phase retrieval methods have made ptychography a practical and popular imaging technique. Compared to previous techniques, ptychography provides superior robustness and resolution at the expense of more advanced and time-consuming data analysis. Therefore, by taking advantage of massively parallel architectures, high-throughput processing can expedite this analysis and provide microscopists with immediate feedback. These advances allow real-time imaging at wavelength-limited resolution, coupled with a large field of view. This article describes a set of algorithmic and computational methodologies used at the Advanced Light Source and US Department of Energy light sources. These are packaged as a CUDA-based software environment named SHARP, aimed at providing state-of-the-art high-throughput ptychography reconstructions for the coming era of diffraction-limited light sources.

47 OTHER INSTRUMENTATION↗

Developing A Large Time Step, Robust, and Low Communication Multi-Moment PDE Integration Scheme for Exascale Applications

The Boundary Averaged Multi-moment Constrained finite-Volume (BA-MCV) method is de- rived, explained, and evaluated for 1-D transport to assess accuracy, maximum stable time step (MSTS), oscillations for discontinuous data, and parallel communication burden. The BA-MCV scheme is altered from the original MCV scheme to compute the updates of point wise cell boundary derivatives entirely locally. Then it is altered such that boundary moments are replaced with the interface upwind value. The scheme is stable at a maximum stable CFL (MSCFL) value of one no matter how high-order the scheme is, giving significantly larger time steps than Galerkin methods, for which the MSCFL decreases nearly quadratically with in- creasing order. The BA-MCV method is compared against a SE method at varying order, both using the ADER-DT time discretization. BA-MCV error for a sine wave was comparable to the same order of accuracy for a SE method. The resulting large time step, multi-moment, low communication scheme is of great interest for exascale architectures.

Norman, Matthew R.↗

Rotational coherence dominates early-time dynamics and produces long-time revivals in the S 2 state of azulene

Here, the ultrafast dynamics of azulene have been debated for decades, with reported picosecond decay constants variously attributed to intramolecular vibrational redistribution (IVR), internal conversion, or rotational dephasing. Using polarization- and femtosecond time-resolved resonance-enhanced multiphoton ionization spectroscopy with a nanosecond delay window, we disentangle this long-standing inconsistency and show that the early 2–5 ps decay component arises entirely from the rotational dephasing of an excited-state wavepacket. Identical time constants extracted from the decay of the parallel signal and the rise of the perpendicular signal across multiple vibronic origins provide an unambiguous rotational anisotropy signature, eliminating the need for IVR-based interpretations. Extending the measurement window to 1.3 ns reveals well-structured J-type and C-type rotational coherence revivals in S 2 azulene on top of the well-documented fluorescence decay, demonstrating that both the short- and long-time dynamics contain information about the coherent rotational dynamics. These results show that azulene, and by extension polycyclic aromatic hydrocarbons, can sustain structured rotational coherence deep into the nanosecond regime, positioning PAHs as model systems for quantum-coherent wavepacket dynamics and providing a framework for probing coherence, decoherence, and rotational control in electronically rich molecular systems.

Zhan, Jie [University of Georgia, Athens, GA (Unit↗

Entropy production far from equilibrium in a chiral charged plasma in the presence of external electromagnetic fields

We report on the time evolution of a charged strongly coupled N = 4 SYM plasma with an axial anomaly subjected to strong electromagnetic fields. The evolution of this plasma corresponds to a fully backreacted asymptotically AdS 5 solution to the Einstein-Maxwell-Chern-Simons theory. We explore the evolution of the axial current and production of axial charges. As an application we show that after a sufficiently long time both the entropy and the holographic entanglement entropy of a strip-like topology (both parallel to and transverse to the flow of axial current) grow linearly in time.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Electrochemical leaching of spent LIBs: Kinetics, novel reactor, and modeling

The use of electrons as main reagent for the recovery and recycling of critical metals from spent lithium-ion batteries (LIBs) is a process electrification strategy that can be used to close the life-cycle loop of LIBs through more sustainable methods. Electrochemical leaching, a process that uses a reductant that is constantly regenerated electrochemically for the leaching of lithium-ion battery black mass (LIBBM), has shown high extraction efficiencies and sustainable scores. However, slow kinetics, reactor design challenges and lack of deeper understanding of the underlying processes are barriers to the optimization, scale-up, and market adoption of this technology. In this paper, a kinetic study and mathematical model for dissolving LIBBM is presented to better understand the underlying mechanisms aiming to reduce the processing time and make predictions for future design and scale-up. The effect of acid and electrochemically mediated reductant concentrations, LIBBM loading, and cathode/reactor designs were explored. As a result, the leaching time was reduced from 7h to under 1h at a pulp density of 73 g/L, without external heating. A novel reactor with parallel baffle electrodes (PBE) was developed, which significantly reduced the leaching time by improving convection in a stirred slurry electrochemical reactor. Dimensionless numbers were deduced from an unsteady state model, which can be used in dimensional analysis for future process design and scale-up.

25 ENERGY STORAGE↗

Distribution Locational Real-Time Pricing Based Smart Building Control and Management

This paper proposes an real-virtual parallel computing scheme for smart building operations aiming at augmenting overall social welfare. The University of Denver's campus power grid and Ritchie fitness center is used for demonstrating the proposed approach. An artificial virtual system is built in parallel to the real physical system to evaluate the overall social cost of the building operation based on the social science based working productivity model, numerical experiment based building energy consumption model and the power system based real-time pricing mechanism. Through interactive feedback exchanged between the real and virtual system, enlarged social welfare, including monetary cost reduction and energy saving, as well as working productivity improvements, can be achieved.

24 POWER TRANSMISSION AND DISTRIBUTION↗

A New Class of AMG Interpolation Methods Based on Matrix-Matrix Multiplications

A new class of distance-two interpolation methods for algebraic multigrid (AMG) that can be formulated in terms of sparse matrix-matrix multiplications is presented and analyzed. Compared with similar distance-two prolongation operators, the proposed algorithms exhibit improved efficiency and portability to various computing platforms, since they allow one to easily exploit existing high-performance sparse matrix kernels. The new interpolation methods have been implemented in hypre, a widely used parallel multigrid solver library. With the proposed interpolations, the overall time of hypre's BoomerAMG setup can be considerably reduced, while sustaining equivalent, sometimes improved, convergence rates. Numerical results for a variety of test problems on parallel machines are presented that support the superiority of the proposed interpolation operators over the existing ones in hypre.

97 MATHEMATICS AND COMPUTING↗

Accurate reaction-diffusion operator splitting on tetrahedral meshes for parallel stochastic molecular simulations

Spatial stochastic molecular simulations in biology are limited by the intense computation required to track molecules in space either in a discrete time or discrete space framework, which has led to the development of parallel methods that can take advantage of the power of modern supercomputers in recent years. We systematically test suggested components of stochastic reaction-diffusion operator splitting in the literature and discuss their effects on accuracy. We introduce an operator splitting implementation for irregular meshes that enhances accuracy with minimal performance cost. We test a range of models in small-scale MPI simulations from simple diffusion models to realistic biological models and find that multi-dimensional geometry partitioning is an important consideration for optimum performance. We demonstrate performance gains of 1-3 orders of magnitude in the parallel implementation, with peak performance strongly dependent on model specification.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

IMEX HDG-DG: A coupled implicit hybridized discontinuous Galerkin and explicit discontinuous Galerkin approach for shallow water systems

We propose IMEX HDG-DG schemes for planar and spherical shallow water systems. Of interest is subcritical flow, where the speed of the gravity wave is faster than that of nonlinear advection. In order to simulate these flows efficiently, we split the governing system into a stiff part describing the gravity wave and a non-stiff part associated with nonlinear advection. The former is discretized implicitly with the HDG method while an explicit Runge-Kutta DG discretization is employed for the latter. The proposed IMEX HDG-DG framework: 1) facilitates high-order solutions both in time and space; 2) avoids overly small time-step sizes; 3) requires only one linear system solve per time stage; 4) relative to DG generates smaller and sparser linear systems while promoting further parallelism; and 5) suppresses the fast modes in the system with a large time-step size. Numerical results for various test cases demonstrate that our methods are beneficial for applications where non-stiff terms are accurately treated while stiff terms are less accurately handled.

42 ENGINEERING↗

An evaluation of the state of time synchronization on leadership class supercomputers

We present a detailed examination of time agreement characteristics for nodes within extreme-scale parallel computers. Using a software tool we introduce in this paper, we quantify attributes of clock skew among nodes in three representative high-performance computers sited at three national laboratories. Our measurements detail the statistical properties of time agreement among nodes and how time agreement drifts over typical application execution durations. We discuss the implications of our measurements, why the current state of the field is inadequate, and propose strategies to address observed shortcomings.

97 MATHEMATICS AND COMPUTING↗

Relative molecular orientation can impact the onset of plasticity in molecular crystals

Abstract Creating or moving dislocations is the first step to dissipating mechanical energy via plastic deformation under contact loading. In molecular crystals there is both a lattice that defines crystal orientation and a relative orientation of the basis of the molecules. We define a normalization parameter which relates strain at yield, the hardness of the bulk crystal, and a distance parameter analogous to a Burgers vector that nominally predicts the relative ease of initiating plasticity in this broad class of materials. Analyzing the yield behavior of 10 different molecular crystals of varying space groups shows the inter-molecular orientation predicts the experimentally observed applied stress needed to nucleate dislocations. When molecules are oriented ‘parallel’ relative to one another the normalized maximum shear stress at the onset of plasticity is on the order of 3–5 times lower than when molecules within the crystal are ‘anti-parallel’, and molecules with a more equiaxed shape fall in between these bounds. This provides an initial indication of a structural feature which predicts the relative ease of initiating plasticity during contact loading in molecular crystals.

36 MATERIALS SCIENCE↗

Virtual Time III, Part 3: Throttling and Message Cancellation

This is Part 3 of a trio of papers that unify in a natural way the two historically distinct parallel discrete event synchronization paradigms, optimistic and conservative, combining the best properties of both into a single framework called Unified Virtual Time (UVT). In this part, we survey the synchronization effects that can be achieved by restricting to corner cases the relationships permitted among the control variables, GVT, CVT, TVT, and LVT, which were defined in Part 1. Here we also survey various throttling policies from the literature and describe how they can be implemented in UVT by controlling the value of TVT, including policies that can take advantage of rollback in addition to LP blocking. A significant result is a new category of efficient and higher precision throttling algorithms for optimistic execution that are based on optimistic lookahead, defined in a way that is symmetric to what we now call the conservative lookahead information that is traditionally used for conservative synchronization. Finally, we present a novel algorithm allowing the choice between lazy and aggressive cancellation to be made on a message-by-message basis using either external logic expressed in the model code, or policy code internal to the simulator, or a mixture of both.

throttling↗

Covering Resilience: A Recent Development for Binomial Checkpointing

In terms of computing time, adjoint methods offer a very attractive alternative to compute gradient information, required, e.g., for optimization purposes. However, together with this very favorable temporal complexity result comes a memory requirement that is in essence proportional with the operation count of the underlying function, e.g., if algorithmic differentiation is used to provide the adjoints. For this reason, checkpointing approaches in many variants have become popular. This paper analyzes an extension of the so-called binomial approach to cover also possible failures of the computing systems. Such a measure of precaution is of special interest for massive parallel simulations and adjoint calculations where the mean time between failure of the large scale computing system is smaller than the time needed to complete the calculation of the adjoint information. We describe the extensions of standard checkpointing approaches required for such resilience, provide a corresponding implementation and discuss first numerical results.

Walther, Andrea↗

Extending the Binomial Checkpointing Technique for Resilience

In terms of computing time, adjoint methods offer a very attractive alternative to compute gradient information, re- quired, e.g., for optimization purposes. However, together with this very favorable temporal complexity result comes a memory requirement that is in essence proportional with the operation count of the underlying function, e.g., if algo- rithmic differentiation is used to provide the adjoints. For this reason, checkpointing approaches in many variants have become popular. This paper analyzes an extension of the so-called binomial approach to cover also possible failures of the computing systems. Such a measure of precaution is of special interest for massive parallel simulations and adjoint calculations where the mean time between failure of the large scale computing system is smaller than the time needed to complete the calculation of the adjoint information. We de- scribe the extensions of standard checkpointing approaches required for such resilience, provide a corresponding imple- mentation and discuss numerical results.

Walther, Andrea↗

Performance and energy impact of OpenMP runtime configurations on power constrained systems

Energy consumption of an application has attained the same vitality as execution time in current HPC systems, primarily due to the massive energy consumption of these systems and consequently substantial energy bills. This fact forced software developers as well as hardware vendors to put an extensive focus on energy consumption. This focus becomes even more crucial in power constrained systems, where the amount of power dedicated to applications is limited. In such systems, finding the optimal balance between execution time and energy consumption has a significant impact on utilizing these systems efficiently. A programming model is a necessary layer where optimizations can be applied to find the optimal balance. OpenMP is a standard programming model for intra-node parallelism. In this paper, we give a detailed analysis of how to optimize the execution time and energy consumption of an OpenMP application using the OpenMP runtime environment at different power levels. We studied twenty-eight OpenMP parallel regions from five NAS Parallel Benchmark (NPB) applications. Based on the study, we show that for a given power level, a suitable selection of OpenMP runtime parameters can improve the execution time and energy consumption of a parallel region up to 67% and 72%, respectively. We also show that these fine-grained improvements resulted in up to 26% of execution time and 38% of energy consumption improvement for a given OpenMP application. We finally observed that optimizing the energy consumption behavior alone across all power levels regardless of execution time behavior can lead to an additional energy consumption improvement of up to 55%. However, this improvement comes at the expense of execution time.

97 MATHEMATICS AND COMPUTING↗

SU-F-SPS-09: Parallel MC Kernel Calculations for VMAT Plan Improvement

Purpose: Adding kernels (small perturbations in leaf positions) to the existing apertures of VMAT control points may improve plan quality. We investigate the calculation of kernel doses using a parallelized Monte Carlo (MC) method. Methods: A clinical prostate VMAT DICOM plan was exported from Eclipse. An arbitrary control point and leaf were chosen, and a modified MLC file was created, corresponding to the leaf position offset by 0.5cm. The additional dose produced by this 0.5 cm × 0.5 cm kernel was calculated using the DOSXYZnrc component module of BEAMnrc. A range of particle history counts were run (varying from 3 × 10{sup 6} to 3 × 10{sup 7}); each job was split among 1, 10, or 100 parallel processes. A particle count of 3 × 10{sup 6} was established as the lower range because it provided the minimal accuracy level. Results: As expected, an increase in particle counts linearly increases run time. For the lowest particle count, the time varied from 30 hours for the single-processor run, to 0.30 hours for the 100-processor run. Conclusion: Parallel processing of MC calculations in the EGS framework significantly decreases time necessary for each kernel dose calculation. Particle counts lower than 1 × 10{sup 6} have too large of an error to output accurate dose for a Monte Carlo kernel calculation. Future work will investigate increasing the number of parallel processes and optimizing run times for multiple kernel calculations.

60 APPLIED LIFE SCIENCES↗