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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 433 records · Page 24
All sourcesNASA NTRSDOE OSTI
DOE OSTI2020

GapMind: Automated Annotation of Amino Acid Biosynthesis

ABSTRACT GapMind is a Web-based tool for annotating amino acid biosynthesis in bacteria and archaea ( http://papers.genomics.lbl.gov/gaps ). GapMind incorporates many variant pathways and 130 different reactions, and it analyzes a genome in just 15 s. To avoid error-prone transitive annotations, GapMind relies primarily on a database of experimentally characterized proteins. GapMind correctly handles fusion proteins and split proteins, which often cause errors for best-hit approaches. To improve GapMind’s coverage, we examined genetic data from 35 bacteria that grow in defined media without amino acids, and we filled many gaps in amino acid biosynthesis pathways. For example, we identified additional genes for arginine synthesis with succinylated intermediates in Bacteroides thetaiotaomicron , and we propose that Dyella japonica synthesizes tyrosine from phenylalanine. Nevertheless, for many bacteria and archaea that grow in minimal media, genes for some steps still cannot be identified. To help interpret potential gaps, GapMind checks if they match known gaps in related microbes that can grow in minimal media. GapMind should aid the identification of microbial growth requirements. IMPORTANCE Many microbes can make all of the amino acids (the building blocks of proteins). In principle, we should be able to predict which amino acids a microbe can make, and which it requires as nutrients, by checking its genome sequence for all of the necessary genes. However, in practice, it is difficult to check for all of the alternative pathways. Furthermore, new pathways and enzymes are still being discovered. We built an automated tool, GapMind, to annotate amino acid biosynthesis in bacterial and archaeal genomes. We used GapMind to list gaps: cases where a microbe makes an amino acid but a complete pathway cannot be identified in its genome. We used these gaps, together with data from mutants, to identify new pathways and enzymes. However, for most bacteria and archaea, we still do not know how they can make all of the amino acids.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2024

In Silico Human Mobility Data Science: Leveraging Massive Simulated Mobility Data (Vision Paper)

Human mobility data science using trajectories or check-ins of individuals has many applications. Recently, we have seen a plethora of research efforts that tackle these applications. However, research progress in this field is limited by a lack of large and representative datasets. The largest and most commonly used dataset of individual human trajectories captures fewer than 200 individuals, while datasets of individual human check-ins capture fewer than 100 check-ins per city per day. Thus, it is not clear if findings from the human mobility data science community would generalize to large populations. Since obtaining massive, representative, and individual-level human mobility data is hard to come by due to privacy considerations, the vision of this work is to embrace the use of data generated by large-scale socially realistic microsimulations. Informed by both real data and leveraging social and behavioral theories, massive spatially explicit microsimulations may allow us to simulate entire megacities at the person level. The simulated worlds, which do not capture any identifiable personal information, allow us to perform “in silico” experiments using the simulated world as a sandbox in which we have perfect information and perfect control without jeopardizing the privacy of any actual individual. In silico experiments have become commonplace in other scientific domains such as chemistry and biology, permitting experiments that foster the understanding of concepts without any harm to individuals. This work describes challenges and opportunities for leveraging massive and realistic simulated alternate worlds for in silico human mobility data science.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2020

COVID-19 global pandemic planning: Performance and electret charge of N95 respirators after recommended decontamination methods

Shortages of N95 respirators for use by medical personnel have driven consideration of novel conservation strategies, including decontamination for reuse and extended use. Decontamination methods listed as promising by the Centers for Disease Control and Prevention (CDC) (vaporous hydrogen peroxide (VHP), wet heat, ultraviolet irradiation (UVI)) and several methods considered for low resource environments (bleach, isopropyl alcohol and detergent/soap) were studied for two commonly used surgical N95 respirators (3M™ 1860 and 1870+ Aura™). Although N95 filtration performance depends on the electrostatically charged electret filtration layer, the impact of decontamination on this layer is largely unexplored. As such, respirator performance following decontamination was assessed based on the fit, filtration efficiency, and pressure drop, along with the relationship between (1) surface charge of the electret layer, and (2) elastic properties of the straps. Decontamination with VHP, wet heat, UVI, and bleach did not degrade fit and filtration performance or electret charge. Isopropyl alcohol and soap significantly degraded fit, filtration performance, and electret charge. Pressure drop across the respirators was unchanged. Modest degradation of N95 strap elasticity was observed in mechanical fatigue testing, a model for repeated donnings and doffings. CDC recommended decontamination methods including VHP, wet heat, and UV light did not degrade N95 respirator fit or filtration performance in these tests. Extended use of N95 respirators may degrade strap elasticity, but a loss of face seal integrity should be apparent during user seal checks. NIOSH recommends performing user seal checks after every donning to detect loss of appropriate fit. Decontamination methods which degrade electret charge such as alcohols or detergents should not be used on N95 respirators. The loss of N95 performance due to electret degradation would not be apparent to a respirator user or evident during a negative pressure user seal check.

60 APPLIED LIFE SCIENCES↗
DOE OSTI2023

IDAES-PSE 2.1.0 Release

The Institute for the Design of Advanced Energy Systems (IDAES) Integrated Platform is a versatile computational environment offering extensive process systems engineering (PSE) capabilities for optimizing the design and operation of complex, interacting technologies and systems. IDAES enables users to efficiently search vast, complex design spaces to discover the lowest cost, most environmentally sustainable solutions while supporting the full process modeling lifecycle, from conceptual design to dynamic optimization and control. The extensible, open platform empowers users to create models of novel processes and rapidly develop custom analyses, workflows, and end-user applications. IDAES-PSE 2.1.0 Release Highlights New IDAES Examples Repository Starting with this release, the IDAES examples are developed in the new IDAES/examples repository. Along with many content and usability improvements, the most significant changes are: To install the examples, after installing IDAES, run pip install idaes-examples The idaes get-examples command, previously used for this, has been removed The HTML version is now available at https://idaes-examples.readthedocs.io The previous URL, https://idaes.github.io/examples-pse, will not be updated and may be removed at some point in the future For more details, refer to the resources available at IDAES/examples. Removal of Non-Functional Apps A review of the code in the idaes/apps and idaes/models_extra folders was undertaken, and a number of tools were identified as being outdated or non-functional and no longer supported by their development teams. Due to this, the following tools have been removed: idaes/apps/alamopy_depr (note that the new ALAMOpy interface remains avaialble in idaes/core/surrogates) idaes/apps/helmet idaes/apps/ripe idaes/apps/roundingRegression idaes/models_extra/carbon_capture Pyomo 6.6 This version of IDAES is the first requiring Pyomo 6.6. This version of Pyomo contains multiple internal improvements and refactorings. While for the majority of cases this should have positive or no impact on solvability of IDAES models, we are aware of a small number of models that have been affected as a result of these changes. For more information, refer to the Pyomo 6.6.1 release notes. Other highlights Model Initialization A prototype API for a new approach to initializing IDAES models is now available which makes available some new techniques for initializing models. This is documented in the Initializing Models Reference Guide Modular Properties Framework Support for some transport properties Helmholtz Equation of State properties Better error checking for case where unit models are set to include phase equilibrium but the property package is set to support only a single phase Multi-Stream Contactor model: a new base model for systems involving contacting of two or more streams with mass transfer. This model is intended to be used as the foundation for models such as membrane separators, solvent extraction and other similar processes. This is documented in the Multi-Stream Contactor Reference Guide idaes/models_extra/power_generation report() methods for unit models using Helmholtz equation of state General Code Maintenance Streamlining of dependencies and creation of new optional dependency groupings to support non-core tools General linting of codebase to ensure compliance with most pylint checks Spell checking of all code and doc strings Removal of backward compatibility code for Python 2

IDAES↗
DOE OSTI2020

Initial Radiation of Nuclear Power Plant Components (CRADA NFE-17-06892 Final Report)

As advanced reactor concepts are developed, instrumentation and control (I&C) cables and sensors will play a significant role in assuring their operation is well understood, and safety-related process information can be collected reliably over the course of their design life. As a first step to develop acceptance criteria and define the limits of currently available nuclear I&C cable and sensor technology, a collaboration between Oak Ridge National Laboratory and Analysis and Measurement Services (AMS) Corporation was initiated under the Gateway for Accelerated Innovation in Nuclear (GAIN) Program. This collaborative effort focused on providing technical information related to the combined thermal and radiation aging of nuclear power plant (NPP) cables, companion NPP cable insulation samples, and two prototype temperature and two pressure sensors. This work was carried out using the instrumented gamma irradiation system that is part of the High Flux Isotope Reactor Gamma Irradiation Facility (HFIR GIF). This system provided the opportunity for the condition of the prototype sensors to be tracked during the irradiation in order to determine their functional limits with greater granularity when compared to a simple irradiation insertion at the HFIRGIF. Experimental assemblies for sensor irradiation were successfully completed, and sensor irradiation to accumulated dose of 3000 kGy at a rate of approximately 6 kGy/hr was carried out. Two prototype temperature assemblies were continuously monitored during exposure to 3000 kGy and found to have no observable degradation from the irradiation. Two pressure sensors were first irradiated to 1000 kGy. At which point, one of the sensors was found to operate normally; however, a second sensor failed the operability test. The operable pressure sensor output was then continuously monitored from 1000 kGy to 3000 kGy. The sensor output exhibited steady trendable drift versus the accumulated radiation dose. At the conclusion of the irradiation, the four test sensors were released for laboratory calibration checks. The calibration check of the temperature sensors found no significant change after irradiation compared to baseline measurements before irradiation; however, both pressure sensors failed the post-test calibration checks and both sensors were not functioning properly. These results will help inform sensor manufacturers and I&C design engineers of potential limitations of these types of sensors for use in high radiation environments associated with the compact configuration of new Small Modular Reactors (SMRs) such as NuScale’s reactor power module. Irradiations on NPP cables and companion samples were not completed due to programmatic delays, however a path forward that was based on lessons learned from this project was defined to accommodate future, comparable instrumented gamma irradiations at the HFIR GIF.

22 GENERAL STUDIES OF NUCLEAR REACTORS↗
DOE OSTI2020

Data-driven Alignment of the Tracker for the Mu2e Experiment

An alignment of the Mu2e Tracker is investigated using the Mu2e Offline Software and Millepede-II. Simulated misalignments of Tracker planes were inserted between Monte-Carlo event generation and before reconstruction using randomly generated $(x,y,z)$-translations and rotations of the rigid-body planes in the detector model. Cosmic ray muons, with no magnetic field present in the Detector Solenoid, will follow a straight-line trajectory. A maximum-likelihood fit is used to reconstruct a track and determine its parameters. Tracks traversing at least four planes, with ten registered straw hits, and a maximum time residual of $20$ ns are selected to be used in an alignment sample. The cuts were chosen to discard tracks with low information content, such as those with high levels of multiple scattering or those with low numbers of measurements contributing to a single track fit. Millepede-II produces the resulting alignment constants according to a simultaneous least-squares fit of the alignment parameters and the track parameters for all input tracks. The improved alignment constants are used to repeat the process and recover an increased number of suitable tracks, further improving the estimate of the alignment constants in subsequent iterations. A performance study of the process was conducted on a misaligned Tracker in the case of translation-only, and translation plus rotational misalignments. In both cases, the correct alignment constants were recovered to within statistical error after three global fit iterations. Additionally, a continuous integration system was developed for the \texttt{Mu2e/Offline} GitHub repository, introducing a convenient automated testing process for all proposed changes (``pull requests"). The tests developed included a full build of the software, followed by tests of the validation routines, geometry overlap checking, and multi-threading mode. Additionally, code quality checks and low-statistics physics comparison checks a re also available.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗
DOE OSTI2021

Definitions for Testing Whether Evaluated Nuclear Data Relative Uncertainties are Realistic in Size

This document describes various tests that can be used to check whether evaluated relative uncertainties stored in nuclear-data covariances are realistic. To be more specific, these tests check whether nuclear-data uncertainties could be either over- or under-estimated given the input that usually enters the evaluation of nuclear-data mean values and covariances. Warning and error messages on the reliability of nuclear-data uncertainties will result from these tests. If uncertainties of one specific nuclear-data observable trigger warning messages from multiple tests, an evaluator should counter-check the reliability of the relative uncertainties of this particular nuclear-data covariance matrix.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗
DOE OSTI2026

Database Performance Monitoring for DUNE

This project improves Checkmk monitoring for DUNE Rucio PostgreSQL database services by adding clearer dashboard visibility for connection and lock behavior. The work began with a request to monitor database performance metrics such as connection usage, configured limits, lock activity, wait behavior, query performance, storage trends, and saturation alerts. Existing Checkmk PostgreSQL checks were reviewed, and gaps were identified in how connection states and lock modes were displayed. To address these gaps, two DSG-specific local checks were added for dune_rucio_prod: one for connection-state monitoring and one for lock-state monitoring. These checks report active, idle, idle-in-transaction, total, usage-percent, lock-mode, waiting-lock, and wait-age metrics. The added metrics supplement built-in Checkmk monitoring and provide DUNE application developers with clearer service states, history graphs, dashboard widgets, and alerts.

Bowers, Elliot [Cabrillo Coll.]↗
DOE OSTI2020

HarDWR - Cumulative Water Rights Curves

A dataset within the Harmonized Database of Western U.S. Water Rights (HarDWR). For a detailed description of the database, please see the meta-record v2.0. Changelog v2.0 - Recalculated based on Harmonized Water Rights Records v2.0 sourced from WestDAAT - Added "Unspecified" was a water source category, and files associated with this category v1.01 - Updated the names of each file with an ID number less than 3 digits to include leading 0s v1.0 - Initial public release Description This product an updated version of the database used as input to the WBM model (Grogan et al. in review; Grogan et al. 2022), and is the result of the step creating cumulative water rights curves described in Lisk et al. (2024). This database contains 2,667 individual .csv files, three for each Water Management Area (WMA) in the 11-state region. File Naming WMA_[###]_[X]W.csv, where [###] is the unique identifier for each WMA, and [X] is either "S" for surface water rights, "G" for groundwater rights, or "U" for unspecified. Column headers in each file: Year: the priority date year CUML: the total cumulative water rights allocated up to this priority date year (ft3s-1) Irrigation: The percent of cumulative water rights allocated to the Irrigation category up to this priority date year (%) Domestic: The percent of cumulative water rights allocated to the Domestic category up to this priority date year (%) Livestock: The percent of cumulative water rights allocated to the Livestock category up to this priority date year (%) Fish: The percent of cumulative water rights allocated to the Fish category up to this priority date year (%) Industrial: The percent of cumulative water rights allocated to the Industrial category up to this priority date year (%) Environmental: The percent of cumulative water rights allocated to the Environmental category up to this priority date year (%) Other: The percent of cumulative water rights allocated to the Other category up to this priority date year (%) In addition to the database files, there is a companion .csv file, called stateWMAs_ID.csv. The main purpose of this file is to provide the means of translating between the [###] unique identifier and the various other id of the WMA the file is attached to. This translation file has five columns, which are: basinNum: The official state given alpha-numeric identifier of the WMA basinName: the state provided English name of the area, where applicable state: the state name uniID: a unique identifier we created by concatenating the state name, and underscore, and the state numerical ID ID: a unique numeric identifier we created as a requirement for the files to be used within WBM (Grogan et al. in review) For those whom may be interested in exploring our code more in depth, we are also making available an internal data file for convenience. The file is in .RData format and contains everything described above as well as some minor additional objects used within the code calculating the cumulative curves. For completeness, here is a detailed description of the various objects which can be found within the .RData file: states: A character vector containing the state names for those states in the study region. More importantly, the index of the state name is also the index in which that state's data can be found in the various following list objects. For example, if California is the second index in this object, the data for California will also be in the second index for each accompanying list. wmasRightsPersGrd: A list of nested lists of data frames. Each state has one entry in the top level list and consist of a list with one data frame per WMA. The data frames in this object are the same as the above described .csv files, specifically for groundwater. wmasRightsPersSur: A list of nested lists of data frames. Each state has one entry in the top level list and consist of a list with one data frame per WMA. The data frames in this object are the same as the above described .csv files, specifically for surface water. wmasRightsPersUnsp: A list of nested lists of data frames. Each state has one entry in the top level list and consist of a list with one data frame per WMA. The data frames in this object are the same as the above described .csv files, specifically for water from an unspecified source. wmasRightsTotsGrd: A list of nested lists of data frames. Each state has one entry in the top level list and consist of a list with one data frame per WMA. The values in the data frames of this object would be the equivalent to multiplying the CUML column by the sector percentage columns to create the sector total ft3s-1, specifically for groundwater. This object is provided for convenience to check out original total values, if desired. wmasRightsTotsSur: A list of nested lists of data frames. Each state has one entry in the top level list and consist of a list with one data frame per WMA. The values in the data frames of this object would be the equivalent to multiplying the CUML column by the sector percentage columns to create the sector total ft3s-1, specifically for surface water. This object is provided for convenience to check out original total values, if desired. wmasRightsTotsUnsp: A list of nested lists of data frames. Each state has one entry in the top level list and consist of a list with one data frame per WMA. The values in the data frames of this object would be the equivalent to multiplying the CUML column by the sector percentage columns to create the sector total ft3s-1, specifically for water from an unspecified source. This object is provided for convenience to check out original total values, if desired. wmaIDByState: A list of data frames which contain the by state allocation by WMA matrix. There is a matrix for each state in a different data frame within the object.

Economics↗
NASA NTRS1975

Launch vehicle attitude control

The minor loop and minor loop support modules which maintain correct vehicle attitude control by generating vehicle attitude error signals were verified. The logic is checked during boost and orbit (unusual timing situations necessitate the additional orbit checks) and the constants used by these modules checked at every point during the flight. Since the same logic instructions are used throughout the flight with only the constants changing, verification of the logic at two points and the constants at all points verify the logic throughout the flight.

Source record↗
NASA NTRS1974

Alternant codes

A class of codes defined by the parity check matrix of a linear code of minimum distance at least t + 1 is examined and the number of parity check symbols is discussed. Determinants of this type are known as alternants (Muir and Metzler, 1930); codes corresponding to such a matrix are termed alternant codes. The parity check matrix is obtained by restricting some of its elements to subfields of GF(q to the m-th power). Minimum distance and redundancy bounds are established for these codes, and some interesting equivalence and invariance properties are derived.

Helgert, H. J.↗
NASA NTRS1977

Evaluation Program for Secondary Spacecraft Cells: Synchronous Orbit Testing of Sealed Nickel Cadmium Cells

Performance data concerning sealed nickel-cadmium cells operating under a synchronous orbit regime are presented. A space satellite maintaining a position over a fixed point on earth as the earth rotates on its axis and revolves about the sun was simulated. Results include: (1) exposure to synchronous orbit testing at a temperature of 40 C yields less than 6 years of life; (2) performance at -20 C presents a low capacity problem; (3) the capacity check, performed at the middle of each show period, provides a temporary red reconditioning effect on the cells in that the end-of-discharge voltages are higher, for approximately 7 to 10 days, following the capacity check than they were 7 to 10 days prior to the capacity check; (4) all the test packs at -20 C and 40 C have either failed or were discontinued because of low capacity; and (5) test packs at temperatures of 0 C and 10 C have delivered the best capacity during life and packs tested at 20 C showed better life capability than packs tested at -20 C and 40 C.

Harkness, J. D.↗
NASA NTRS1980

Tube-shape verifier

Inexpensive apparatus checks accuracy of bent tubes. Assortment of slotted angles and clamps is bolted down to flat aluminum plate outlining shape of standard tube bent to desired configuration. Newly bent tubes are then checked against this outline. Because parts are bolted down, tubes can be checked very rapidly without disturbing outline. One verifier per tube-bending machine can really speed up production in tube-bending shop.

Anderson, A. N.↗
NASA NTRS1978

Quasi-optimal decoding of linear block codes using soft decision detection

A simple but effective decoding procedure, applicable to any (n,k) linear block code with symbols from GF(q), is described. The technique involves a transformation of the parity check equations which focuses the code's correction power on the soft symbol set while still retaining the capability to correct one symbol error from outside this set. The soft symbol set is defined to be the n-k least reliably detected code symbol positions whose parity check row-spaces are linearly independent. The process generates a number of error vector screening candidates, each a solution to the parity check equations, and the maximum-likelihood candidate is accepted.

Greene, E. P.↗
NASA NTRS1983

Experiments with optical instruments

Photography was used to document known defects of the periscopic instrument used to check spacecrews in the descent module of the Soyuz T-4. The screen of the altitude control unit was also photographed and revealed glare in the central field of vision. A light filter was installed in the peripheral window to observe the Sun and horizon of the Earth. Checking attitude control by means of polaroids enabled a 5 further advance (500 km) into the zone of shadow. The attitude control unit was used to check the orbital orientation with respect to the vertical during the night segment of flight. A lens screen was used for the emission glow of the atmosphere at an altitude of about 100 km. Docking of the Soyuz T-4 was observed by means of an onboard display, a television camera, and a sighting device. From a distance of about 5 km, the space station could be seen as a bright dot in the sighting device. Docking occurred in shadow.

Savinykh, V.↗
NASA NTRS1985

Automatic oscillator frequency control system

A frequency control system makes an initial correction of the frequency of its own timing circuit after comparison against a frequency of known accuracy and then sequentially checks and corrects the frequencies of several voltage controlled local oscillator circuits. The timing circuit initiates the machine cycles of a central processing unit which applies a frequency index to an input register in a modulo-sum frequency divider stage and enables a multiplexer to clock an accumulator register in the divider stage with a cyclical signal derived from the oscillator circuit being checked. Upon expiration of the interval, the processing unit compares the remainder held as the contents of the accumulator against a stored zero error constant and applies an appropriate correction word to a correction stage to shift the frequency of the oscillator being checked. A signal from the accumulator register may be used to drive a phase plane ROM and, with periodic shifts in the applied frequency index, to provide frequency shift keying of the resultant output signal. Interposition of a phase adder between the accumulator register and phase plane ROM permits phase shift keying of the output signal by periodic variation in the value of a phase index applied to one input of the phase adder.

Smith, S. F.↗
NASA NTRS1987

Second generation experiments in fault tolerant software

The purpose of the Multi-Version Software (MVS) experiment is to obtain empirical measurements of the performance of multi-version systems. Twenty version of a program were prepared under reasonably realistic development conditions from the same specifications. The overall structure of the testing environment for the MVS experiment and its status are described. A preliminary version of the control system is described that was implemented for the MVS experiment to allow the experimenter to have control over the details of the testing. The results of an empirical study of error detection using self checks are also presented. The analysis of the checks revealed that there are great differences in the ability of individual programmers to design effective checks.

Knight, J. C.↗
NASA NTRS1987

Development of the helium signature test for orbiter main propulsion system revalidation between flights

This paper presents the development of a test technique for revalidation of the Space Shuttle Orbiter Main Propulsion System during ground turnaround operations between flights of the Space Transportation System (STS). The Main Propulsion System consists of the three Space Shuttle Main Engines (SSME's) and the Main Propulsion System (MPS) connecting the SSME's to the orbiter/ground and orbiter/External Tank (ET) interfaces. The Helium Signature Test (HST) performs an end-to-end leak check of the MPS/SSME subsystems that serves as a final validation of those systems for reuse. The test was initially developed during the ground processing flow prior to the STS-6 launch of orbiter Challenger. The test was developed to fulfill a requirement for an overall subsystem leak check as a result of experience gained during the STS-6 Challenger Flight Readiness Firing (FRF) series, during which leaks were encountered in the SSME's that were not detected by routine fluid joint leak checks. The HST technique is described in detail, including orbiter and test equipment configuration, and compared to other leak detection methods used to revalidate MPS/SSME systems for reuse. The HST data base accumulated since STS-6 is summarized and future test applications are described.

Bilardo, Vincent J., Jr.↗