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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 433 records · Page 24
All sourcesNASA NTRSDOE OSTI
DOE OSTI2020

Potential virus-mediated nitrogen cycling in oxygen-depleted oceanic waters

Viruses play an important role in the ecology and biogeochemistry of marine ecosystems. Beyond mortality and gene transfer, viruses can reprogram microbial metabolism during infection by expressing auxiliary metabolic genes (AMGs) involved in photosynthesis, central carbon metabolism, and nutrient cycling. While previous studies have focused on AMG diversity in the sunlit and dark ocean, less is known about the role of viruses in shaping metabolic networks along redox gradients associated with marine oxygen minimum zones (OMZs). Here, we analyzed relatively quantitative viral metagenomic datasets that profiled the oxygen gradient across Eastern Tropical South Pacific (ETSP) OMZ waters, assessing whether OMZ viruses might impact nitrogen (N) cycling via AMGs. Identified viral genomes encoded six N-cycle AMGs associated with denitrification, nitrification, assimilatory nitrate reduction, and nitrite transport. The majority of these AMGs (80%) were identified in T4-like Myoviridae phages, predicted to infect Cyanobacteria and Proteobacteria, or in unclassified archaeal viruses predicted to infect Thaumarchaeota. Four AMGs were exclusive to anoxic waters and had distributions that paralleled homologous microbial genes. Together, these findings suggest viruses modulate N-cycling processes within the ETSP OMZ and may contribute to nitrogen loss throughout the global oceans thus providing a baseline for their inclusion in the ecosystem and geochemical models.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2024

Pinus ponderosa physiology data from the 2023 girdling manipulation field experiment at Game Ridge, Missoula County, Montana, USA

This dataset contains physiology data on Pinus ponderosa saplings, including: leaf water potential (MPa, megapascals), leaf osmotic potential (MPa, megapascals), leaf pressure potential (MPa, megapascals), leaf relative water content (% saturated mass), as well as soluble sugars (% dry mass),starch (% dry mass), and total nonstructural carbohydrates (% dry mass) found in branch phloem and xylem. Data files and data dictionary(ies) are uploaded as .csv files and .xlsx files. The Users Guide is a .pdf file. Location data can be found in the Google Earth file GameRidge_SitePlotCoordinates.kmz.kml included here. These datasets were collected for Plant Carbohydrate Depletion, Mycorrhizal Networks, and Vulnerability to Drought: An Experimental Test in the Field. This experiment examined the interdependency between plant hydraulics and carbohydrate availability and sought to develop ways to incorporate interactions with below ground symbiotic organisms to better model and quantify forest response to drought.

54 ENVIRONMENTAL SCIENCES↗
NASA NTRS2021

Large-scale space use of large juvenile and adult smalltooth sawfish Pristis pectinata: implications for management

The smalltooth sawfish Pristis pectinata is an endangered species endemic to the Atlantic Ocean. The only known viable populations occur in the USA along both coasts of Florida and in the western Bahamas. Little is known about habitat use and movement ecology of large juvenile and adult smalltooth sawfish. Although Critical Habitat — a management designation in the USA — has been identified for small juveniles, it has yet to be identified for these life stages. Between May 2016 and April 2019, we used passive acoustic telemetry and 3 large data sharing networks of receivers to track movements of 43 large juvenile and adult smalltooth sawfish. During this study, 24 females and 19 males were implanted with transmitters with estimated 4 or 10 yr battery lives. These tagged individuals were detected off the southeastern USA on 461 receivers ranging from off the coast of Brunswick, Georgia, to the lower Florida Keys, and along the Gulf coast to Apalachee Bay, Florida. Seasonal migrations were undertaken by 58% (43% mature; 57% immature) of the tagged individuals, with the remainder being apparent residents of their tagging locations. Tagged sawfish from both size classes and of both sexes migrated, which indicates that neither sex nor length is a predictor of whether a sawfish will migrate or not. Although both coasts of Florida were used for migration, most individuals consistently used the same coast when they migrated. The areas surrounding Boca Grande, Cape Canaveral, and the lower Florida Keys were heavily visited sites that could be further evaluated as potential Critical Habitat for these life stages. Understanding the movement patterns of this Critically Endangered species is essential for creating policies to protect areas important for promoting growth of the population.

Pristis pectinata Habitat use · Acoustic monitorin↗
DOE OSTI2025

The architecture of resilience: a genome assembly of Myrothamnus flabellifolia sheds light on desiccation tolerance and sex determination

Myrothamnus flabellifolia is a dioecious resurrection plant endemic to southern Africa that has become an important model for understanding desiccation tolerance. Despite its ecological and medicinal significance, genomic and transcriptomic resources for the species are limited. We generated a chromosome-level, haplotype-resolved reference genome assembly and annotation for M. flabellifolia and conducted transcriptomic profiling across a natural dehydration–rehydration time course in the field. Genome architecture and sex determination were characterized, and co-expression network and cis-regulatory element (CRE) enrichment analyses were used to investigate dynamic responses to desiccation. The 1.28-Gb genome exhibits unusually consistent chromatin architecture with unique chromosome organization across highly divergent haplotypes. We identified an XY sexual system with a small sex-determining region on Chromosome 8. Transcriptomic responses varied with dehydration severity, pointing to early suppression of growth, progressive activation of protective mechanisms, and subsequent return to homeostasis upon rehydration. Late embryogenesis abundant and early light-induced protein transcripts were dynamically regulated and showed enrichment of abscisic acid and stress-responsive CREs pointing toward conserved responses. Together, this study provides foundational resources for understanding the genomic architecture and reproductive biology of M. flabellifolia and offers new insights into the mechanisms of desiccation tolerance.

chromosome structure↗
DOE OSTI2022

ActinoBase: tools and protocols for researchers working on Streptomyces and other filamentous actinobacteria

Actinobacteria is an ancient phylum of Gram-positive bacteria with a characteristic high GC content to their DNA. The ActinoBase Wiki is focused on the filamentous actinobacteria, such as Streptomyces species, and the techniques and growth conditions used to study them. These organisms are studied because of their complex developmental life cycles and diverse specialised metabolism which produces many of the antibiotics currently used in the clinic. ActinoBase is a community effort that provides valuable and freely accessible resources, including protocols and practical information about filamentous actinobacteria. It is aimed at enabling knowledge exchange between members of the international research community working with these fascinating bacteria. ActinoBase is an anchor platform that underpins worldwide efforts to understand the ecology, biology and metabolic potential of these organisms. There are two key differences that set ActinoBase apart from other Wiki-based platforms: [1] ActinoBase is specifically aimed at researchers working on filamentous actinobacteria and is tailored to help users overcome challenges working with these bacteria and [2] it provides a freely accessible resource with global networking opportunities for researchers with a broad range of experience in this field.

59 BASIC BIOLOGICAL SCIENCES↗
NASA NTRSDate not supplied

GeoNEX-SUBSETS: Geostationary Satellite Observations Over International Observing Network Sites

Satellite remote sensing is crucial for monitoring the Earth’s surface and for simulating global carbon and water cycles. Subsets of satellite data from sensors such as MODIS over established observing networks have been valuable for researchers for comparing the ground observed phenomena with satellite observations. Here, we introduce new subsets of the GeoNEX geostationary satellite datasets over locations of several ground observation networks. The NASA Earth Exchange group has been generating geostationary satellite products with our international partners and universities to cover the entire globe. In comparison to polar-orbiting satellite sensors such as MODIS, the new generation geostationary satellites observe target areas at a higher frequency (5-10 minutes), which also significantly increased the data volume. To reduce the burden of downloading and extracting geostationary time series data and provide easy access to the community, we provide subsets of GeoNEX products through our data portal [www.data.nas.nasa.gov]. The ready-to-use subset follows the same format as the MODIS fixed sites subset tools for users who are familiar with MODIS subset data and software. The selected networks include Fluxnet, AERONET, and Phenocam over the conterminous US. We demonstrate the usage of the GeoNEX fixed-site subset data and showcase thir advantages with three example studies. The first example is simulating the diurnal cycle of plant ecophysiology at Fluxnet sites. The high frequency of the GeoNEX time series allows us to run ecological models at sub-hour time steps and directly compare the simulated carbon and water fluxes with half-hourly Fluxnet data. The second example uses the geostationary data to track phenological changes. It highlights the high-frequent observations of geostationary satellites in helping mask cloud covers and capture the quick responses of vegetation to environmental changes. As such, these examples demonstrate the value of ready-to-use GeoNEX subsets data in terrestrial ecophysiology research.

GeoNEX↗
NASA NTRS2018

Mobile Device Application for Monitoring Cyanobacteria Harmful Algal Blooms Using Sentinel-3 Satellite Ocean and Land Colour Instruments

Cyanobacterial harmful algal blooms (cyanoHAB) cause human and ecological health problems in lakes worldwide. The timely distribution of satellite-derived cyanoHAB data is necessary for adaptive water quality management and for targeted deployment of water quality monitoring resources. Software platforms that permit timely, useful, and cost-effective delivery of information from satellites are required to help managers respond to cyanoHABs. The Cyanobacteria Assessment Network (CyAN) mobile device application (app) uses data from the European Space Agency Copernicus Sentinel-3 satellite Ocean and Land Colour Instrument (OLCI) in near real-time to make initial water quality assessments and quickly alert managers to potential problems and emerging threats related to cyanobacteria. App functionality and satellite data were validated with 25 state health advisories issued in 2017. The CyAN app provides water quality managers with a user-friendly platform that reduces the complexities associated with accessing satellite data to allow fast, efficient, initial assessments across lakes.

Harmful Algal Bloom↗
NASA NTRS2022

3D-CHESS: Decentralized, Distributed, Dynamic, and Context-aware Heterogeneous Sensor Systems

This paper describes the objectives and current status of the 3D-CHESS project which aims to demonstrate a new Earth observing strategy based on a context-aware Earth observing sensor web. This sensor web consists of a set of nodes with a knowledge base, heterogeneous sensors, edge computing, and autonomous decision-making capabilities. Context awareness is defined as the ability for the nodes to gather, exchange, and leverage contextual information (e.g., state of the Earth system, state and capabilities of itself and of other nodes in the network, and how those states relate to the dy- namic mission objectives) to improve decision making and planning. The current goal of the project is to demonstrate proof of concept by comparing the performance of a 3D- CHESS sensor web with that of status quo architectures in the context of a multi-sensor inland hydrologic and ecologic monitoring system.

David, Cedric H.↗
DOE OSTI2022

Predicting spring green-up across diverse North American grasslands

Vegetation phenology influences many ecosystem and climate processes, such as carbon uptake and energy and water cycles. Thus, understanding drivers of vegetation phenology is crucial for predicting current and future impacts of climate change on ecological systems. Existing models can accurately predict the date of spring green-up in temperate forests but tend to perform poorly in grassland systems. We hypothesize this is because most do not incorporate water availability, a primary limiting factor for grassland plants. In this study, we used long-term datasets of digital imagery from the PhenoCam Network of 43 diverse North American grassland sites (195 site-years) to test existing spring phenology models, as well as develop several new models that incorporate precipitation or soil moisture (53 models). As a result, most of the new models performed substantially better, with the best model requiring sufficient accumulated precipitation followed by warm temperatures to trigger spring onset (root mean square error, RMSE, between predicted and observed dates = 16.0 days). Importantly, the best model performed well across all grassland types using a single set of parameters, from temperate to arid grasslands. Since plants are adapted to their local climates, model performance was further improved when parameters were independently optimized for four separate climate regions (RMSE = 10.4 days). Therefore, both sufficient precipitation and temperature are required for grassland green-up, but optimal thresholds vary by region. Running the top model with projected climate data (representative concentration pathway 8.5) suggests that, depending on the climate region, spring onset will occur up to 12 days earlier within 100 years in temperature-limited sites, but the trend is unclear for precipitation-limited sites (3.5 ± 8.0 days later). This new phenology model improves our ability to understand and predict grassland dynamics, with implications for both current and future ecosystem processes related to carbon and water cycling.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2022

Organizational Principles of Hyporheic Exchange Flow and Biogeochemical Cycling in River Networks Across Scales

Hyporheic zones increase freshwater ecosystem resilience to hydrological extremes and global environmental change. However, current conceptualizations of hyporheic exchange, residence time distributions, and the associated biogeochemical cycling in streambed sediments do not always accurately explain the hydrological and biogeochemical complexity observed in streams and rivers. Specifically, existing conceptual models insufficiently represent the coupled transport and reactivity along groundwater and surface water flow paths, the role of autochthonous organic matter in streambed biogeochemical functioning, and the feedbacks between surface-subsurface ecological processes, both within and across spatial and temporal scales. While simplified approaches to these issues are justifiable and necessary for transferability, the exclusion of important hyporheic processes from our conceptualizations can lead to erroneous conclusions and inadequate understanding and management of interconnected surface water and groundwater environments. This is particularly true at the landscape scale, where the organizational principles of spatio-temporal dynamics of hyporheic exchange flow (HEF) and biogeochemical processes remain largely uncharacterized. This article seeks to identify the most important drivers and controls of HEF and biogeochemical cycling based on a comprehensive synthesis of findings from a wide range of river systems. We use these observations to test current paradigms and conceptual models, discussing the interactions of local-to-regional hydrological, geomorphological, and ecological controls of hyporheic zone functioning. This improved conceptualization of the landscape organizational principles of drivers of HEF and biogeochemical processes from reach to catchment scales will inform future river research directions and watershed management strategies.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2021

Identification of Effector Metabolites Using Exometabolite Profiling of Diverse Microalgae

Dissolved exometabolites mediate algal interactions in aquatic ecosystems, but microalgal exometabolomes remain understudied. We conducted an untargeted metabolomic analysis of nonpolar exometabolites exuded from four phylogenetically and ecologically diverse eukaryotic microalgal strains grown in the laboratory, freshwater Chlamydomonas reinhardtii, brackish Desmodesmus sp., marine Phaeodactylum tricornutum, and marine Microchloropsis salina, to identify released metabolites based on relative enrichment in the exometabolomes compared to cell pellet metabolomes. Exudates from the different taxa were distinct, but we did not observe clear phylogenetic patterns. We used feature-based molecular networking to explore the identities of these metabolites, revealing several distinct di- and tripeptides secreted by each of the algae, lumichrome, a compound that is known to be involved in plant growth and bacterial quorum sensing, and novel prostaglandin-like compounds. We further investigated the impacts of exogenous additions of eight compounds selected based on exometabolome enrichment on algal growth. Of these compounds, five (lumichrome, 5'-S-methyl-5'-thioadenosine, 17-phenyl trinor prostaglandin A2, dodecanedioic acid, and aleuritic acid) impacted growth in at least one of the algal cultures. Two of these compounds (dodecanedioic acid and aleuritic acid) produced contrasting results, increasing growth in some algae and decreasing growth in others. Together, our results reveal new groups of microalgal exometabolites, some of which could alter algal growth when provided exogenously, suggesting potential roles in allelopathy and algal interactions.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2022

Stochastic and deterministic processes shape bioenergy crop microbiomes along a vertical soil niche

Abstract Sustainable biofuel cropping systems aim to address climate change while meeting energy needs. Understanding how soil and plant‐associated microbes respond to these different cropping systems is key to promoting agriculture sustainability and evaluating changes in ecosystem functions. Here, we leverage a long‐term biofuel cropping system field experiment to dissect soil and root microbiome changes across a soil‐depth gradient in poplar, restored prairie and switchgrass to understand their effects on the microbial communities. High throughput amplicon sequencing of the fungal internal transcribed spacer (ITS) and prokaryotic 16S DNA regions showed a common trend of root and soil microbial community richness decreasing and evenness increasing with depth. Ecological niche (root vs. soil) had the strongest effect on community structure, followed by depth, then crop. Stochastic processes dominated the structuring of fungal communities in deeper soil layers while operational taxonomic units (OTUs) in surface soil layers were more likely to co‐occur and to be enriched by plant hosts. Prokaryotic communities were dispersal limited at deeper depths. Microbial networks showed a higher density, connectedness, average degree and module size in deeper soils. We observed a decrease in fungal‐fungal links and an increase of bacteria–bacteria links with increasing depth in all crops, particularly in the root microbiome.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2022

Spatial scales of competition and a growth–motility trade-off interact to determine bacterial coexistence

The coexistence of competing species is a long-lasting puzzle in evolutionary ecology research. Despite abundant experimental evidence showing that the opportunity for coexistence decreases as niche overlap increases between species, bacterial species and strains competing for the same resources are commonly found across diverse spatially heterogeneous habitats. We thus hypothesized that the spatial scale of competition may play a key role in determining bacterial coexistence, and interact with other mechanisms that promote coexistence, including a growth–motility trade-off. To test this hypothesis, we let two Pseudomonas putida strains compete at local and regional scales by inoculating them either in a mixed droplet or in separate droplets in the same Petri dish, respectively. We also created conditions that allow the bacterial strains to disperse across abiotic or fungal hyphae networks. We found that competition at the local scale led to competitive exclusion while regional competition promoted coexistence. When competing in the presence of dispersal networks, the growth–motility trade-off promoted coexistence only when the strains were inoculated in separate droplets. Our results provide a mechanism by which existing laboratory data suggesting competitive exclusion at a local scale is reconciled with the widespread coexistence of competing bacterial strains in complex natural environments with dispersal.

59 BASIC BIOLOGICAL SCIENCES↗
NASA NTRS1979

The ecology of prominences

The paper discusses the roles of prominences in the solar scheme. Attention is given to classifications and the ways in which prominences exist: hydrostatic support, ballistic support, and magnetic support. In the case of ballistic support, surges are differentiated from sprays which involve the ejection of material that is already above the solar surface. Discussion also covers filimets and fibrils and the conditions for their appearance. It is proposed that most flares originate in prominence instabilities. In addition supergranulation is covered, noting the network is not seen on the boundary of unipolar regions. It is concluded that prominences play a critical role in flares and field reconnection, and the evolution of solar magnetic fields.

Zirin, H.↗
NASA NTRS2009

Solutions Network Formulation Report. The Potential Contributions of the Global Precipitation Measurement Mission to Phosphorus Reduction Efforts in the Florida Everglades

This candidate solution suggests the use of GPM precipitation observations to enhance the CERP. Specifically, GPM measurements could augment in situ precipitation data that are used to model agricultural phosphorus discharged into the Everglades. This solution benefits society by aiding water resource managers in identifying effective phosphorus reduction scenarios and thereby returning the Everglades to a more natural state. This solution supports the Water Management, Coastal Management, and Ecological Forecasting National Applications.

Anderson, Daniel↗
NASA NTRS2015

Sea Ice Outlook for September 2015 June Report - NASA Global Modeling and Assimilation Office

The recent decline in perennial sea ice cover in Arctic Ocean is a topic of enormous scientific interest and has relevance to a broad variety of scientific disciplines and human endeavors including biological and physical oceanography, atmospheric circulation, high latitude ecology, the sustainability of indigenous communities, commerce, and resource exploration. A credible seasonal prediction of sea ice extent would be of substantial use to many of the stakeholders in these fields and may also reveal details on the physical processes that result in the current trends in the ice cover. Forecasts are challenging due in part to limitations in the polar observing network, the large variability in the climate system, and an incomplete knowledge of the significant processes. Nevertheless it is a useful to understand the current capabilities of high latitude seasonal forecasting and identify areas where such forecasts may be improved. Since 2008 the Arctic Research Consortium of the United States (ARCUS) has conducted a seasonal forecasting contest in which the average Arctic sea ice extent for the month of September (the month of the annual extent minimum) is predicted from available forecasts in early June, July, and August. The competition is known as the Sea Ice Outlook (SIO) but recently came under the auspices of the Sea Ice Prediction Network (SIPN), and multi-agency funded project to evaluate the SIO. The forecasts are submitted based on modeling, statistical, and heuristic methods. Forecasts of Arctic sea ice extent from the GMAO are derived from seasonal prediction system of the NASA Goddard Earth Observing System model, version 5 (GEOS 5) coupled atmosphere and ocean general circulation model (AOGCM). The projections are made in order to understand the relative skill of the forecasting system and to determine the effects of future improvements to the system. This years prediction is for a September average Arctic ice extent of 5.030.41 million km2.

SIPN↗
NASA NTRS2017

Very High Resolution Tree Cover Mapping for Continental United States using Deep Convolutional Neural Networks

Uncertainties in input land cover estimates contribute to a significant bias in modeled above ground biomass (AGB) and carbon estimates from satellite-derived data. The resolution of most currently used passive remote sensing products is not sufficient to capture tree canopy cover of less than ca. 10-20 percent, limiting their utility to estimate canopy cover and AGB for trees outside of forest land. In our study, we created a first of its kind Continental United States (CONUS) tree cover map at a spatial resolution of 1-m for the 2010-2012 epoch using the USDA NAIP imagery to address the present uncertainties in AGB estimates. The process involves different tasks including data acquisition ingestion to pre-processing and running a state-of-art encoder-decoder based deep convolutional neural network (CNN) algorithm for automatically generating a tree non-tree map for almost a quarter million scenes. The entire processing chain including generation of the largest open source existing aerial satellite image training database was performed at the NEX supercomputing and storage facility. We believe the resulting forest cover product will substantially contribute to filling the gaps in ongoing carbon and ecological monitoring research and help quantifying the errors and uncertainties in derived products.

High Resolution↗