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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 433 records · Page 24
All sourcesNASA NTRSDOE OSTI
DOE OSTI2016

Differential Coexpression Analysis Reveals Extensive Rewiring of Arabidopsis Gene Coexpression in Response to Pseudomonas syringae Infection

Plant defense responses to pathogens involve massive transcriptional reprogramming. Recently, differential coexpression analysis has been developed to study the rewiring of gene networks through microarray data, which is becoming an important complement to traditional differential expression analysis. Using time-series microarray data of Arabidopsis thaliana infected with Pseudomonas syringae, we analyzed Arabidopsis defense responses to P. syringae through differential coexpression analysis. Overall, we found that differential coexpression was a common phenomenon of plant immunity. Genes that were frequently involved in differential coexpression tend to be related to plant immune responses. Importantly, many of those genes have similar average expression levels between normal plant growth and pathogen infection but have different coexpression partners. By integrating the Arabidopsis regulatory network into our analysis, we identified several transcription factors that may be regulators of differential coexpression during plant immune responses. We also observed extensive differential coexpression between genes within the same metabolic pathways. Several metabolic pathways, such as photosynthesis light reactions, exhibited significant changes in expression correlation between normal growth and pathogen infection. Taken together, differential coexpression analysis provides a new strategy for analyzing transcriptional data related to plant defense responses and new insights into the understanding of plant-pathogen interactions.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2011

Random matrix theory for mixed regular-chaotic dynamics in the super-extensive regime

We apply Tsallis's q-indexed nonextensive entropy to formulate a random matrix theory (RMT), which may be suitable for systems with mixed regular-chaotic dynamics. We consider the super-extensive regime of q<1. We obtain analytical expressions for the level-spacing distributions, which are strictly valid for 2 X2 random-matrix ensembles, as usually done in the standard RMT. We compare the results with spacing distributions, numerically calculated for random matrix ensembles describing a harmonic oscillator perturbed by Gaussian orthogonal and unitary ensembles.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗
DOE OSTI2011

The two modes extension to the Berk-Breizman equation: Delayed differential equations and asymptotic solutions

The integro-differential Berk-Breizman (BB) equation, describing the evolution of particle-driven wave mode is transformed into a simple delayed differential equation form {nu}{partial_derivative}a({tau})/{partial_derivative}{tau}=a({tau}) -a{sup 2}({tau}- 1) a({tau}- 2). This transformation is also applied to the two modes extension of the BB theory. The obtained solutions are presented together with the derived asymptotic analytical solutions and the numerical results.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗
DOE OSTI2011

Charging of a dust particle in a plasma with a non extensive electron distribution function

We present a theoretical model for the electrostatic charging of a spherical dust particle in an electron-ion plasma with streaming ions and a nonextensive electron distribution function following a non-Maxwell-Boltzmann law. The non-extensive electron distribution function drastically affects the electron current to dust grain surface and, therefore, the electron charge on a dust particle is significantly reduced in a non-Maxwellian dusty plasma.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗
DOE OSTI2012

N=2 supersymmetric extension of l-conformal Galilei algebra

N=2 supersymmetric extension of the l-conformal Galilei algebra is constructed. A relation between its representations in flat spacetime and in Newton-Hooke spacetime is discussed. An infinite-dimensional generalization of the superalgebra is given.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗
DOE OSTI2012

Analysis of moire fringes by Wiener filtering: An extension to the Fourier method

In X-ray Talbot interferometry, tilting the phase grating with respect to the absorption grating results in the formation of spatial fringes. The analysis of this moire pattern, classically performed by the Fourier method, allows the extraction of the sample phase shift information from a single image. In this context, an extension to the Fourier method is proposed. The filter used to extract the fringe information is chosen optimally in the least-squares sense, given models for the zeroth and first order modes, noise and the modulation transfer function. The latter is obtained by measuring the detector response to moire fringes with increasing frequencies. The obtained Wiener filter allows a better reconstruction of the phase information at all fringe frequencies, compared to the usual box or gaussian filters. This is demonstrated quantitatively by experiments using synchrotron radiation.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗
DOE OSTI2013

Systematic analysis of transverse momentum distribution and non-extensive thermodynamics theory

A systematic analysis of transverse momentum distribution of hadrons produced in ultrarelativistic p+p and A+A collisions is presented. We investigate the effective temperature and the entropic parameter from the non-extensive thermodynamic theory of strong interaction. We conclude that the existence of a limiting effective temperature and of a limiting entropic parameter is in accordance with experimental data.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗
DOE OSTI2013

Nuclear EMC effect in non-extensive statistical model

In the present work, we attempt to describe the nuclear EMC effect by using the proton structure functions obtained from the non-extensive statistical quark model. We record that such model has three fundamental variables, the temperature T, the radius, and the Tsallis parameter q. By combining different small changes, a good agreement with the experimental data may be obtained. Another interesting point of the model is to allow phenomenological interpretation, for instance, with q constant and changing the radius and the temperature or changing the radius and q and keeping the temperature.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗
DOE OSTI2013

Rational extension and Jacobi-type X{sub m} solutions of a quantum nonlinear oscillator

We construct a rational extension of a recently studied nonlinear quantum oscillator model. Our extended model is shown to retain exact solvability, admitting a discrete spectrum and corresponding closed-form solutions that are expressed through Jacobi-type X{sub m} exceptional orthogonal polynomials.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗
DOE OSTI2014

Properties of hadronic systems according to the non-extensive self-consistent thermodynamics

The non-extensive self-consistent theory describing the thermodynamics of hadronic systems at high temperatures is used to derive some thermodynamical quantities, as pressure, entropy, speed of sound and trace-anomaly. The calculations are free of fitting parameters, and the results are compared to lattice QCD calculations, showing a good agreement between theory and data up to temperatures around 175 MeV. Above this temperature the effects of a singularity in the partition function at T{sub o} = 192 MeV results in a divergent behaviour in respect with the lattice calculation.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗
DOE OSTI2015

Properties of solitary kinetic Alfvén wave in a plasma with non-extensive electrons

The properties of solitary kinetic Alfvén waves (SKAWs) in a finite β plasma with three dimensional non-extensive electrons are investigated. Numerical results show that there only exists sub-Alfvénic hump type SKAW. The down limit of the Alfvén Mach number M{sub z} for the existence of SKAW increases with the increase of β. Whereas, it varies non-monotonously with respect to electron nonextensive parameter q for a given β. In the range of M{sub z} where SKAWs exist for different values of q, a bigger q results in a denser soliton structure, making the magnitude of the static electric field along the background magnetic field enhanced. However, the dependence of the amplitudes of the perpendicular magnetic and electric field on q is non-monotonous.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗
DOE OSTI2015

Capacitated arc routing problem and its extensions in waste collection

Capacitated arc routing problem (CARP) is the youngest generation of graph theory that focuses on solving the edge/arc routing for optimality. Since many years, operational research devoted to CARP counterpart, known as vehicle routing problem (VRP), which does not fit to several real cases such like waste collection problem and road maintenance. In this paper, we highlighted several extensions of capacitated arc routing problem (CARP) that represents the real-life problem of vehicle operation in waste collection. By purpose, CARP is designed to find a set of routes for vehicles that satisfies all pre-setting constraints in such that all vehicles must start and end at a depot, service a set of demands on edges (or arcs) exactly once without exceeding the capacity, thus the total fleet cost is minimized. We also addressed the differentiation between CARP and VRP in waste collection. Several issues have been discussed including stochastic demands and time window problems in order to show the complexity and importance of CARP in the related industry. A mathematical model of CARP and its new version is presented by considering several factors such like delivery cost, lateness penalty and delivery time.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗
DOE OSTI2015

Deformed oscillator algebra approach of some quantum superintegrable Lissajous systems on the sphere and of their rational extensions

We extend the construction of 2D superintegrable Hamiltonians with separation of variables in spherical coordinates using combinations of shift, ladder, and supercharge operators to models involving rational extensions of the two-parameter Lissajous systems on the sphere. These new families of superintegrable systems with integrals of arbitrary order are connected with Jacobi exceptional orthogonal polynomials of type I (or II) and supersymmetric quantum mechanics. Moreover, we present an algebraic derivation of the degenerate energy spectrum for the one- and two-parameter Lissajous systems and the rationally extended models. These results are based on finitely generated polynomial algebras, Casimir operators, realizations as deformed oscillator algebras, and finite-dimensional unitary representations. Such results have only been established so far for 2D superintegrable systems separable in Cartesian coordinates, which are related to a class of polynomial algebras that display a simpler structure. We also point out how the structure function of these deformed oscillator algebras is directly related with the generalized Heisenberg algebras spanned by the nonpolynomial integrals.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗
DOE OSTI2016

The free energy of the metastable supersaturated vapor via restricted ensemble simulations. III. An extension to the Corti and Debenedetti subcell constraint algorithm

In order to improve the sampling of restricted microstates in our previous work [C. Nie, J. Geng, and W. H. Marlow, J. Chem. Phys. 127, 154505 (2007); 128, 234310 (2008)] and quantitatively predict thermal properties of supersaturated vapors, an extension is made to the Corti and Debenedetti subcell constraint algorithm [D. S. Corti and P. Debenedetti, Chem. Eng. Sci. 49, 2717 (1994)], which restricts the maximum allowed local density at any point in a simulation box. The maximum allowed local density at a point in a simulation box is defined by the maximum number of particles N{sub m} allowed to appear inside a sphere of radius R, with this point as the center of the sphere. Both N{sub m} and R serve as extra thermodynamic variables for maintaining a certain degree of spatial homogeneity in a supersaturated system. In a restricted canonical ensemble, at a given temperature and an overall density, series of local minima on the Helmholtz free energy surface F(N{sub m}, R) are found subject to different (N{sub m}, R) pairs. The true equilibrium metastable state is identified through the analysis of the formation free energies of Stillinger clusters of various sizes obtained from these restricted states. The simulation results of a supersaturated Lennard-Jones vapor at reduced temperature 0.7 including the vapor pressure isotherm, formation free energies of critical nuclei, and chemical potential differences are presented and analyzed. In addition, with slight modifications, the current algorithm can be applied to computing thermal properties of superheated liquids.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2016

Connection between quantum systems involving the fourth Painlevé transcendent and k-step rational extensions of the harmonic oscillator related to Hermite exceptional orthogonal polynomial

The purpose of this communication is to point out the connection between a 1D quantum Hamiltonian involving the fourth Painlevé transcendent P{sub IV}, obtained in the context of second-order supersymmetric quantum mechanics and third-order ladder operators, with a hierarchy of families of quantum systems called k-step rational extensions of the harmonic oscillator and related with multi-indexed X{sub m{sub 1,m{sub 2,…,m{sub k}}}} Hermite exceptional orthogonal polynomials of type III. The connection between these exactly solvable models is established at the level of the equivalence of the Hamiltonians using rational solutions of the fourth Painlevé equation in terms of generalized Hermite and Okamoto polynomials. We also relate the different ladder operators obtained by various combinations of supersymmetric constructions involving Darboux-Crum and Krein-Adler supercharges, their zero modes and the corresponding energies. These results will demonstrate and clarify the relation observed for a particular case in previous papers.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗
DOE OSTI2016

The PETRA III extension

The 3{sup rd} generation low-emittance 6 GeV PETRA III facility has been substantially modified to add new beamlines. This extension project involved the complete removal and reconstruction of part of the storage ring with a double-bend achromat lattice as well as the construction of two new experimental halls. Making use of two long straight sections and a canted undulator scheme in the rebuilt arcs, up to ten new insertion device beamlines can be accommodated. In the current phase of the project, seven insertion device and one bending magnet beamline are being implemented.

43 PARTICLE ACCELERATORS↗