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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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All sourcesNASA NTRSDOE OSTI
DOE OSTI2023

BinaRena: a dedicated interactive platform for human-guided exploration and binning of metagenomes

Background: Exploring metagenomic contigs and “binning” them into metagenome-assembled genomes (MAGs) are essential for the delineation of functional and evolutionary guilds within microbial communities. Despite the advances in automated binning algorithms, their capabilities in recovering MAGs with accuracy and biological relevance are so far limited. Researchers often find that human involvement is necessary to achieve representative binning results. This manual process however is expertise demanding and labor intensive, and it deserves to be supported by software infrastructure. Results: We present BinaRena, a comprehensive and versatile graphic interface dedicated to aiding human operators to explore metagenome assemblies via customizable visualization and to associate contigs with bins. Contigs are rendered as an interactive scatter plot based on various data types, including sequence metrics, coverage profiles, taxonomic assignments, and functional annotations. Various contig-level operations are permitted, such as selection, masking, highlighting, focusing, and searching. Binning plans can be conveniently edited, inspected, and compared visually or using metrics including silhouette coefficient and adjusted Rand index. Completeness and contamination of user-selected contigs can be calculated in real time. In demonstration of BinaRena’s usability, we show that it facilitated biological pattern discovery, hypothesis generation, and bin refinement in a complex tropical peatland metagenome. It enabled isolation of pathogenic genomes within closely related populations from the gut microbiota of diarrheal human subjects. It significantly improved overall binning quality after curating results of automated binners using a simulated marine dataset. Conclusions: BinaRena is an installation-free, dependency-free, client-end web application that operates directly in any modern web browser, facilitating ease of deployment and accessibility for researchers of all skill levels. The program is hosted at https://github.com/qiyunlab/binarena, together with documentation, tutorials, example data, and a live demo. It effectively supports human researchers in intuitive interpretation and fine tuning of metagenomic data.

59 BASIC BIOLOGICAL SCIENCES↗
NASA NTRS2005

NASA Tech Briefs, March 2005

Topics covered include: Scheme for Entering Binary Data Into a Quantum Computer; Encryption for Remote Control via Internet or Intranet; Coupled Receiver/Decoders for Low-Rate Turbo Codes; Processing GPS Occultation Data To Characterize Atmosphere; Displacing Unpredictable Nulls in Antenna Radiation Patterns; Integrated Pointing and Signal Detector for Optical Receiver; Adaptive Thresholding and Parameter Estimation for PPM; Data-Driven Software Framework for Web-Based ISS Telescience; Software for Secondary-School Learning About Robotics; Fuzzy Logic Engine; Telephone-Directory Program; Simulating a Direction-Finder Search for an ELT; Formulating Precursors for Coating Metals and Ceramics; Making Macroscopic Assemblies of Aligned Carbon Nanotubes; Ball Bearings Equipped for In Situ Lubrication on Demand; Synthetic Bursae for Robots; Robot Forearm and Dexterous Hand; Making a Metal-Lined Composite-Overwrapped Pressure Vessel; Ex Vivo Growth of Bioengineered Ligaments and Other Tissues; Stroboscopic Goggles for Reduction of Motion Sickness; Articulating Support for Horizontal Resistive Exercise; Modified Penning-Malmberg Trap for Storing Antiprotons; Tumbleweed Rovers; Two-Photon Fluorescence Microscope for Microgravity Research; Biased Randomized Algorithm for Fast Model-Based Diagnosis; Fast Algorithms for Model-Based Diagnosis; Simulations of Evaporating Multicomponent Fuel Drops; Formation Flying of Tethered and Nontethered Spacecraft; and Two Methods for Efficient Solution of the Hitting- Set Problem.

Source record↗
NASA NTRS2016

Analysis of Summer-Time Ozone and Precursor Species in the Southeast United States

Ozone (O3) is a greenhouse gas and toxic pollutant which plays a major role in air quality and atmospheric chemistry. The understanding and ability to model the horizontal and vertical structure of O3 mixing ratios is difficult due to the complex formation/destruction processes and transport pathways that cause large variability of O3. The Environmental Protection Agency has National Ambient Air Quality Standards for O3 set at 75 ppb with future standards proposed to be as low as 65 ppb. These lower values emphasize the need to better understand/simulate the transport processes, emission sources, and chemical processes controlling precursor species (e.g., NOx, VOCs, and CO) which influence O3 mixing ratios. The uncertainty of these controlling variables is particularly large in the southeast United States (US) which is a region impacted by multiple different emission sources of precursor species (anthropogenic and biogenic) and transport processes resulting in complex spatio-temporal O3 patterns. During this work we will evaluate O3 and precursor species in the southeast US applying models, ground-based and airborne in situ data, and lidar observations. In the summer of 2013, the UAH O3 Differential Absorption Lidar (DIAL) (part of the Tropospheric Ozone Lidar Network (TOLNet)) measured vertical O3 profiles from the surface up to approximately 12 km. During this period, the lidar observed numerous periods of dynamic temporal and vertical O3 structures. In order to determine the sources/processes impacting these O3 mixing ratios we will apply the CTM GEOS-Chem (v9-02) at a 0.25 deg x 0.3125 deg resolution. Using in situ ground-based (e.g., SEARCH Network, CASTNET), airborne (e.g., NOAA WP-3D - SENEX 2013, DC-8 - SEAC4RS), and TOLNet lidar data we will first evaluate the model to determine the capability of GEOS-Chem to simulate the spatio-temporal variability of O3 in the southeast US. Secondly, we will perform model sensitivity studies in order to quantify which emission sources (e.g., anthropogenic, biogenic, lighting, wildfire) and transport processes (e.g., stratospheric, long-range, local scale) are contributing to these TOLNet-observed dynamic O3 patterns. Results from the evaluation of the model and the study of sources/processes impacting observed O3 mixing ratios will be presented.

Optical Radar↗
DOE OSTI2025

End-to-end deep learning pipeline for real-time Bragg peak segmentation: from training to large-scale deployment

X-ray crystallography reconstruction, which transforms discrete X-ray diffraction patterns into three-dimensional molecular structures, relies critically on accurate Bragg peak finding for structure determination. As X-ray free electron laser (XFEL) facilities advance toward MHz data rates (1 million images per second), traditional peak finding algorithms that require manual parameter tuning or exhaustive grid searches across multiple experiments become increasingly impractical. While deep learning approaches offer promising solutions, their deployment in high-throughput environments presents significant challenges in automated dataset labeling, model scalability, edge deployment efficiency, and distributed inference capabilities. We present an end-to-end deep learning pipeline with three key components: (1) a data engine that combines traditional algorithms with our peak matching algorithm to generate high-quality training data at scale, (2) a modular architecture that scales from a few million to hundreds of million parameters, enabling us to train large expert-level models offline while deploying smaller, distilled models at the edge, and (3) a decoupled producer-consumer architecture that separates specialized data source layer from model inference, enabling flexible deployment across diverse computing environments. Using this integrated approach, our pipeline achieves accuracy comparable to traditional methods tuned by human experts while eliminating the need for experiment-specific parameter tuning. Although current throughput requires optimization for MHz facilities, our system's scalable architecture and demonstrated model compression capabilities provide a foundation for future high-throughput XFEL deployments.

Wang, Cong↗
NASA NTRS1994

Search for effects of Comet S-L 9 fragment impacts on low radio frequency emission from Jupiter

Decametric radio observations of Jupiter were made before, during, and after the impacts of the fragments of the comet S-L 9 with the planet, from the University of Florida Radio Observatory, the Maipu Radio Astronomy Observatory of the University of Chile, and the Owens Valley Radio Observatory of the California Institute of Technology. The decametric radiation was monitored at frequencies from 16.7 to 32 MHz. The minimum detectable flux densities were on the order of 30 kJy, except for that of the large 26.3 MHz array in Florida, which was about 1 kJy. There was no significant enhancement or suppression of the decametric L-burst or S-burst emission with respect to normal activity patterns that might be attributed to the fragment entries. A burst of left-hand elliptically polarized radiation having a considerably longer duration than an L-burst was observed almost simultaneously with the impact of the large fragment Q2, and another with right-hand elliptical polarization was observed simultaneously with Q1. We consider the possibility that these two bursts were emitted just above the local electron cyclotron frequencies from the southern and northern ends, respectively, of magnetic flux tubes that had been excited in some way by the proximity of fragments Q2 and Q1. A search was conducted for possible comet-enhanced Jovian synchrotron radiation at 45 MHz using a large dipole antenna array at the observatory in Chile.

Carr, T. D.↗
DOE OSTI2017

Asymmetric responses of primary productivity to precipitation extremes: A synthesis of grassland precipitation manipulation experiments

Climatic changes are altering Earth's hydrological cycle, resulting in altered precipitation amounts, increased interannual variability of precipitation, and more frequent extreme precipitation events. These trends will likely continue into the future, having substantial impacts on net primary productivity (NPP) and associated ecosystem services such as food production and carbon sequestration. Frequently, experimental manipulations of precipitation have linked altered precipitation regimes to changes in NPP. Yet, findings have been diverse and substantial uncertainty still surrounds generalities describing patterns of ecosystem sensitivity to altered precipitation. Additionally, we do not know whether previously observed correlations between NPP and precipitation remain accurate when precipitation changes become extreme. We synthesized results from 83 case studies of experimental precipitation manipulations in grasslands worldwide. Here, we used meta-analytical techniques to search for generalities and asymmetries of aboveground NPP (ANPP) and belowground NPP (BNPP) responses to both the direction and magnitude of precipitation change. Sensitivity (i.e., productivity response standardized by the amount of precipitation change) of BNPP was similar under precipitation additions and reductions, but ANPP was more sensitive to precipitation additions than reductions; this was especially evident in drier ecosystems. Additionally, overall relationships between the magnitude of productivity responses and the magnitude of precipitation change were saturating in form. The saturating form of this relationship was likely driven by ANPP responses to very extreme precipitation increases, although there were limited studies imposing extreme precipitation change, and there was considerable variation among experiments. Finally, this highlights the importance of incorporating gradients of manipulations, ranging from extreme drought to extreme precipitation increases into future climate change experiments. Additionally, policy and land management decisions related to global change scenarios should consider how ANPP and BNPP responses may differ, and that ecosystem responses to extreme events might not be predicted from relationships found under moderate environmental changes.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2022

Theory, phenomenology, and experimental avenues for dark showers: a Snowmass 2021 report

In this work, we consider the case of a strongly coupled dark/hidden sector, which extends the Standard Model (SM) by adding an additional non-Abelian gauge group. These extensions generally contain matter fields, much like the SM quarks, and gauge fields similar to the SM gluons. We focus on the exploration of such sectors where the dark particles are produced at the LHC through a portal and undergo rapid hadronization within the dark sector before decaying back, at least in part and potentially with sizeable lifetimes, to SM particles, giving a range of possibly spectacular signatures such as emerging or semi-visible jets. Other, non-QCD-like scenarios leading to soft unclustered energy patterns or glueballs are also discussed. After a review of the theory, existing benchmarks and constraints, this work addresses how to build consistent benchmarks from the underlying physical parameters and present new developments for the PYTHIA Hidden Valley module, along with jet substructure studies. Finally, a series of improved search strategies is presented in order to pave the way for a better exploration of the dark showers at the LHC.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗
NASA NTRS1973

Choice: 36 band feature selection software with applications to multispectral pattern recognition

Feature selection software was developed at the Earth Resources Laboratory that is capable of inputting up to 36 channels and selecting channel subsets according to several criteria based on divergence. One of the criterion used is compatible with the table look-up classifier requirements. The software indicates which channel subset best separates (based on average divergence) each class from all other classes. The software employs an exhaustive search technique, and computer time is not prohibitive. A typical task to select the best 4 of 22 channels for 12 classes takes 9 minutes on a Univac 1108 computer.

Jones, W. C.↗
DOE OSTI2021

Relationships between the Stellar, Gaseous, and Star Formation Disks in LITTLE THINGS Dwarf Irregular Galaxies: Indirect Evidence for Substantial Fractions of Dark Molecular Gas

The stellar, gaseous and young stellar disks in the LITTLE THINGS sample of nearby dwarf irregular galaxies are fitted with functions to search for correlations between the parameters. We find that the H i radial profiles are generally flatter in the center and fall faster in the outer regions than the V-band profiles, while young stars are more centrally concentrated, especially if the H i is more centrally flat. This pattern suggests that the H i is turning into molecules in the center, and the molecular clouds are forming stars and FUV. A model that assumes the molecular surface density is proportional to the total gas surface density to a power of 1.5 or 2, in analogy with the Kennicutt–Schmidt relation, reproduces the relationship between the ratio of the visible to the H i scale length and the H i Sérsic index. The molecular fraction is estimated as a function of radius for each galaxy by converting the FUV to a molecular surface density using conventional calibrations. The average molecular fraction inside 3R {sub D} is 23% ± 17%. However, the break in the stellar surface brightness profile has no unified tracer related to star formation.

74 ATOMIC AND MOLECULAR PHYSICS↗
DOE OSTI2024

Land cover and space use influence coyote carnivory: evidence from stable-isotope analysis

For many species, the relationship between space use and diet composition is complex, with individuals adopting varying space use strategies such as territoriality to facilitate resource acquisition. Coyotes ( Canis latrans ) exhibit two disparate types of space use; defending mutually exclusive territories (residents) or moving nomadically across landscapes (transients). Resident coyotes have increased access to familiar food resources, thus improved foraging opportunities to compensate for the energetic costs of defending territories. Conversely, transients do not defend territories and are able to redirect energetic costs of territorial defense towards extensive movements in search of mates and breeding opportunities. These differences in space use attributed to different behavioral strategies likely influence foraging and ultimately diet composition, but these relationships have not been well studied. We investigated diet composition of resident and transient coyotes in the southeastern United States by pairing individual space use patterns with analysis of stable carbon (δ 13 C) and nitrogen (δ 15 N) isotope values to assess diet. During 2016–2017, we monitored 41 coyotes (26 residents, 15 transients) with GPS radio-collars along the Savannah River area in the southeastern United States. We observed a canopy effect on δ 13 C values and little anthropogenic food in coyote diets, suggesting 13 C enrichment is likely more influenced by reduced canopy cover than consumption of human foods. We also observed other land cover effects, such as agricultural cover and road density, on δ 15 N values as well as reduced space used by coyotes, suggesting that cover types and localized, resident-like space use can influence the degree of carnivory in coyotes. Finally, diets and niche space did not differ between resident and transient coyotes despite differences observed in the proportional contribution of potential food sources to their diets. Although our stable isotope mixing models detected differences between the diets of resident and transient coyotes, both relied mostly on mammalian prey (52.8%, SD = 15.9 for residents, 42.0%, SD = 15.6 for transients). Resident coyotes consumed more game birds (21.3%, SD = 11.6 vs 13.7%, SD = 8.8) and less fruit (10.5%, SD = 6.9 vs 21.3%, SD = 10.7) and insects (7.2%, SD = 4.7 vs 14.3%, SD = 8.5) than did transients. Our findings indicate that coyote populations fall on a feeding continuum of omnivory to carnivory in which variability in feeding strategies is influenced by land cover characteristics and space use behaviors.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2016

Interstellar laser communication: implementability criterion and optimisation conditions for the addressed signal search and sending

Using new opportunities offered by the construction of large optical telescopes, a laser radiation receiver with an iodine active quantum filter, high-energy iodine lasers with a diffraction-limited beam divergence and the discovery of exoplanets of the Earth type, including those located relatively not far from the Sun, we analyse the implementability of interstellar laser communication under the conditions, when the central spot of the diffraction pattern at the place of the laser signal reception by means of large optical telescopes can be made smaller than the orbit of the planet, and the signals come to the specified point of the orbit not synchronously with the planet motion because of the error in the determination of the distance between the Sun and the star, around which the planet chosen for communication rotates. (paper)

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗
DOE OSTI2023

Search for octupolar order in NpO 2 by neutron powder diffraction

The magnetic structure of neptunium dioxide (NpO 2 ) remains a mystery despite decades of research. We revisited the search for magnetic ordering in NpO 2 by performing a powder neutron diffraction experiment at low temperatures and relatively large values of Q. Diffraction data were collected for 300 MK, 15 K, and 35 K to understand the phase transition near 25 K. However, no significant changes in the neutron diffraction pattern were identified. Using the octupolar magnetic form factor j 6 , the maximum theoretical expected value of the magnetic moment (3.27 μ B ), the calculated magnetic Bragg peak intensities would not be observable in neutron powder diffraction data. This value is much larger than the previously estimated magnetic moment of ~0.1 μ B . In conclusion, supported by experimental results, these calculations suggest that unpolarized neutron powder diffraction is unsuitable for measuring octupolar ordering in NpO 2 .

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
NASA NTRS1985

A search for long-lived velocity fields at the solar poles

A search has been made in the polar regions of the sun for large-scale (50-200 Mm) velocity fields with lifetimes of the order of the solar rotation period (approximately equal to or greater than 30 days). The observations show that any such large-scale, long-lived velocity patterns in the polar regions must have an amplitude less than 5 m/s. Marginally significant detections (at the 2-3 sigma level) were made of two kinds of structures with amplitudes of order 3 m/s. One has a rotation period approximately 38 days (close to the polar rotation period at the sun's surface), and a scale approximately 150 Mm; the other has a period approximately 24 days and a scale approximately 100 Mm. Tentatively, the first structure is interpreted as being of supergranular origin. The second structure is interpreted as the overshooting of the dominant convective mode of the lower solar convection zone - the giant granulation.

Durney, B. R.↗
DOE OSTI2018

Progress Toward a Deep-Learning-Based Search for Low-Energy Electron Neutrinos in MicroBooNE

MicroBooNE is a neutrino experiment based at Fermilab which consists of a liquid argon time-projection chamber in the Booster Neutrino Beam (BNB). The experiment aims to investigate the excess of electron neutrino-like events seen by the MiniBooNE experiment, also located in the BNB. I will describe the status of our deep-learning-based search for low-energy electron neutrino interactions within the MicroBooNE detector and the muon neutrino interactions by which we will constrain them. This analysis features a novel hybrid approach of traditional reconstruction methods combined with the use of convolutional neural networks, a type of deep learning algorithm highly adept at pattern recognition. I will present work on ongoing studies that will characterize and quantify the systematic uncertainties associated with this analysis.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗
DOE OSTI2016

High-resolution studies of the Majorana atomic chain platform

Ordered assemblies of magnetic atoms on the surface of conventional superconductors can be used to engineer topological superconducting phases and realize Majorana fermion quasiparticles (MQPs) in a condensed matter setting. Recent experiments have shown that chains of Fe atoms on Pb generically have the required electronic characteristics to form a one-dimensional topological superconductor and have revealed spatially resolved signatures of localized MQPs at the ends of such chains. Here we report higher-resolution measurements of the same atomic chain system performed using a dilution refrigerator scanning tunnelling microscope (STM). With significantly better energy resolution than previous studies, we show that the zero-bias peak (ZBP) in Fe chains has no detectable splitting from hybridization with other states. The measurements also reveal that the ZBP exhibits a distinctive ‘double eye’ spatial pattern on nanometre length scales. Theoretically we show that this is a general consequence of STM measurements of MQPs with substantial spectral weight in the superconducting substrate, a conclusion further supported by measurements of Pb overlayers deposited on top of the Fe chains. Lastly, we report experiments performed with superconducting tips in search of the particle–hole symmetric MQP signature expected in such measurements.

Electronic properties and materials↗
DOE OSTI2012

Literature mining of protein-residue associations with graph rules learned through distant supervision

Background: We propose a method for automatic extraction of protein-specific residue mentions from the biomedical literature. The method searches text for mentions of amino acids at specific sequence positions and attempts to correctly associate each mention with a protein also named in the text. The methods presented in this work will enable improved protein functional site extraction from articles, ultimately supporting protein function prediction. Our method made use of linguistic patterns for identifying the amino acid residue mentions in text. Further, we applied an automated graph-based method to learn syntactic patterns corresponding to protein-residue pairs mentioned in the text. We finally present an approach to automated construction of relevant training and test data using the distant supervision model. Results: The performance of the method was assessed by extracting protein-residue relations from a new automatically generated test set of sentences containing high confidence examples found using distant supervision. It achieved a F-measure of 0.84 on automatically created silver corpus and 0.79 on a manually annotated gold data set for this task, outperforming previous methods. Conclusions: The primary contributions of this work are to (1) demonstrate the effectiveness of distant supervision for automatic creation of training data for protein-residue relation extraction, substantially reducing the effort and time involved in manual annotation of a data set and (2) show that the graph-based relation extraction approach we used generalizes well to the problem of protein-residue association extraction. This work paves the way towards effective extraction of protein functional residues from the literature.

59 BASIC BIOLOGICAL SCIENCES↗
NASA NTRS2001

Simulation of Climatic Changes in the Arctic and North Atlantic During Recent Decades

The interactions of the atmosphere and ice-ocean system in the Arctic will be studied using a coupled ice-ocean model which will also use ice drift derived from microwave observations as forcing. We especially search for linkages between the recent large climatic shifts in the Arctic Ocean and atmosphere for which period we also have microwave sea ice data. The coupled model area covers the whole N. Atlantic thus interactions between the lower latitudes are also investigated because we anticipate that the same large scale atmospheric patterns which dominate the midlatitudes extend their influence on the Arctic. The model hindcast for 1951-1993 shows clear decadal variability in the leading modes of ocean circulation. No specific low-freq modes are expected for the ice drift because its spectrum is white. However, the ice drift exhibits two see-saw patterns in response to the leading atmospheric circulation mode ('Arctic Oscillation'), one of them is the well-known out of phase relationship between Baffin Bay and Barents-Kara Seas, the other one is between Siberian shelf and Alaskan Coast (Hakkinen and Geiger, 2000).

Hakkinen, Sirpa↗
DOE OSTI2019

Search for a Low Energy Excess in MicroBooNE

MicroBooNE (the Micro Booster Neutrino Experiment) is a liquid argon time-projection chamber (TPC) experiment designed for short-baseline neutrino physics, currently running at Fermilab. It aims to address the anomalous excess of low-energy events observed by the MiniBooNE experiment. Recent progress towards the search for the low-energy events have brought to develop fully automated event selection algorithm to identify charged-current electron neutrino event candidates with no pions and at least one proton in the final state ($\nu_e~\text{CC} 0\pi \text{N}p$) using the Pandora multi-algorithm pattern recognition. Several cross checks and sidebands have been studied so far to validate the analysis.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗