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At least 433 records · Page 24

Using foreground/background analysis to determine leaf and canopy chemistry

Spectral Mixture Analysis (SMA) has become a well established procedure for analyzing imaging spectrometry data, however, the technique is relatively insensitive to minor sources of spectral variation (e.g., discriminating stressed from unstressed vegetation and variations in canopy chemistry). Other statistical approaches have been tried e.g., stepwise multiple linear regression analysis to predict canopy chemistry. Grossman et al. reported that SMLR is sensitive to measurement error and that the prediction of minor chemical components are not independent of patterns observed in more dominant spectral components like water. Further, they observed that the relationships were strongly dependent on the mode of expressing reflectance (R, -log R) and whether chemistry was expressed on a weight (g/g) or are basis (g/sq m). Thus, alternative multivariate techniques need to be examined. Smith et al. reported a revised SMA that they termed Foreground/Background Analysis (FBA) that permits directing the analysis along any axis of variance by identifying vectors through the n-dimensional spectral volume orthonormal to each other. Here, we report an application of the FBA technique for the detection of canopy chemistry using a modified form of the analysis.

Pinzon, J. E.↗

Lidar Altimeter Measurements of Canopy Structure: Methods and Validation for Closed Canopy, Broadleaf Forests

Lidar altimeter observations of vegetated landscapes provide a time-resolved measure of laser pulse backscatter energy from canopy surfaces and the underlying ground. Airborne lidar altimeter data was acquired using the Scanning Lidar Imager of Canopies by Echo Recovery (SLICER) for a successional sequence of four, closed-canopy, deciduous forest stands in eastern Maryland. The four stands were selected so as to include a range of canopy structures of importance to forest ecosystem function, including variation in the height and roughness of the outer-most canopy surface and the vertical organization of canopy stories and gaps. The character of the SLICER backscatter signal is described and a method is developed that accounts for occlusion of the laser energy by canopy surfaces, transforming the backscatter signal to a canopy height profile (CHP) that quantitatively represents the relative vertical distribution of canopy surface area. The transformation applies an increased weighting to the backscatter amplitude as a function of closure through the canopy and assumes a horizontally random distribution of the canopy components. SLICER CHPs, averaged over areas of overlap where lidar ground tracks intersect, are shown to be highly reproducible. CHP transects across the four stands reveal spatial variations in vegetation, at the scale of the individual 10 m diameter laser footprints, within and between stands. Averaged SLICER CHPs are compared to analogous height profile results derived from ground-based sightings to plant intercepts measured on plots within the four stands. Tbe plots were located on the segments of the lidar ground tracks from which averaged SLICER CHPs were derived, and the ground observations were acquired within two weeks of the SLICER data acquisition to minimize temporal change. The differences in canopy structure between the four stands is similarly described by the SLICER and ground-based CHP results, however a Chi-square test of similarity documents differences that are statistically significant. The differences are discussed in terms of measurement properties that define the smoothness of the resulting CHPs and Lidar Altimeter Measurements of Canopy Structure - Harding et al. canopy properties that may vertically bias the CHP representations of canopy structure. The statistical differences are most likely due to the more noisy character of the ground-based CHPs, especially high in the canopy where ground-based sightings are rare resulting in an underestimate of canopy surface area and height, and to departures from the assumption of horizontal randomness which bias the CHPs toward the observer (upward for SLICER and downward for ground-based CHPs). The results demonstrate that the SLICER observations reliably provide a measure of canopy structure that reveals ecologically interesting structural variations such as those characterizing a successional sequence of closed-canopy, broadleaf forest stands.

Harding, D. J.↗

Canopy architecture measured with a laser

A laser based method was employed to measure and numerically describe the architecture of a corn canopy. Use of the method provides an interception coefficient for classes of vegetation in layers of the canopy viewed in various directions. Architectural data obtained for similar corn canopies but measured by differing methods are comparable to the results obtained using the laser based method. These results provide input data to mathematical models employed in remote sensing for describing the radiation environment in a plant canopy and predicting its reflectance.

Vanderbilt, Vern C.↗

Assessing Alaskan boreal forest landcover affected by climate-wildfire interactions from ground truth surveys and NASA airborne remote sensing

Alaska’s boreal forest is facing unprecedented challenges under rapid climate warming (increasingly severe fires, droughts, pest/disease outbreaks) that may destabilize its function as a global carbon sink. Forests near Fairbanks may be especially vulnerable, impacting air quality and ecosystem services. We combined GT (ground truthing) with Airborne Visible InfraRed Imaging Spectrometer (AVIRIS-NG) images collected by the NASA Arctic-Boreal Vulnerability Experiment (ABoVE) program (2017-2019) to assess landcover change at five recently burned sites (2001-2019) of different fire severities and moisture regimes within 30 miles of Fairbanks. GT included tree seedling counts, understory % cover and >50% leaf canopy color assessment. 36 circular plots (1/30 ha radius) including 6 moderate to severely burned plots were selected across sites. 31 additional sites including 12 burned sites were geotagged in photos. AVIRIS images were processed from 29 spectral bands selected to identify changes in chlorophyll and water content. Images were segmented into natural boundaries (polygons) using ENVI 5.5 software. A spectral library of 8 AVIRIS bands with high between-class/low within-class variation was used in two random forest models to predict vegetation classes (model 1: 12 classes, model 2: 14 classes) in each AVIRIS scene, using 20% of the data as training data. Model 2 classified 20% more polygons overall, but only 42% of GT/geotagged polygons were correctly classified by both models. More forest sites were correctly classified (63%) than open vegetation (32%) or post-fire sites (46%). 50% of aspen forest and post-fire polygons were misclassified as shrubland. GT revealed that post-fire plots supported 134,000 (± 48,000) tree seedlings and saplings ha-1 (0.2 - 4 m height, 64% deciduous) versus 2500 (± 2100) shrubs ha-1 (1-6 m height). > 50% canopy browning was observed in conifer forest (8 plots) with no signs of insect infestation. Canopy herbivory > 50% (leaf miner, leaf beetle) and moose herbivory of tree bark was seen across aspen sites. Our study suggests: 1) low canopy vegetation presents challenges for improved landcover classification, and 2) aspen forest should be differentiated in vegetation maps which would aid in tracking herbivory.

Alaska↗

Vegetation Biochemistry: What Can Imaging Spectrometry Tell Us About Canopies?

Changes in ecosystem processes such as productivity and decomposition may be expressed in the canopy foliar chemistry resulting from altered carbon allocation patterns, metabolic processes and nutrient availability. Understanding carbon balance on land over large regions requires quantitative determination of leaf constituents such as lignin and total nitrogen from remote sensing imaging systems. Results from spectral reflectance measurements of stacked leaves in the laboratory show that spectrum matching techniques are applicable to the derivation of the equivalent liquid water thickness in plants as well as to the extraction of dry leaf matter reflectance spectra from spectra of green leaves. The residual spectra derived by subtracting water spectra from the spectra of green leaves shows a feature at 1.72 micrometers that can be related to the lignin content of the leaves. Oak leaves have a deeper residual absorption feature than do cotton leaves which is consistent with their relative lignin content. Similar results are achieved when deriving the residuals from images taken over areas of grass and pine trees. Imaging spectrometry provides promise in developing images of various foliar biochemical constituents.

Goetz, Alexander F. H.↗

Assessing impacts of off-nadir observation on remote sensing of vegetation - Use of the Suits model

The use of Suits' (1972a, b) digital radiative transfer model to simulate the effect of nonLambertian canopy reflectance on off-nadir observations of vegetation is discussed. Canopy reflectances of cord grass are calculated using the radiative transfer model, field radiometric measurements, and airborne multispectral scanner data. The effects of varying view angles on canopy reflectance are analyzed and compared. The comparison reveals that the model is effective in simulating the sense and magnitude of reflectance change due to variable angles of observations; however, the model does not reproduce the observed dependence of nadir canopy reflectance on solar zenith angle. It is concluded that the radiative transfer model is applicable for predicting the variation in canopy reflectance due to changing view zenith angles.

Bartlett, D. S.↗

L Band Brightness Temperature from Forest: Comparison of Approximate Techniques

In this paper, three approximate physical microwave radiometry models have been used to calculate brightness temperatures from a forest canopy at L-band. These models are (1) tau-omega model (zero order scattering approximation to radiative transfer equations), (2) successive order of scattering model up to first order (first order scattering approximation to the radiative transfer equations), and (3) Peak technique utilizing the active solution obtained from the Distorted Born Approximation (DBA). These models are physically-based and treat vegetation as a layer of discrete scatterers over a rough surface. Vegetation components within the canopy are represented by canonical shapes such as dielectric discs and cylinders. The tau-omega model is based on a zero-order solution to the radiative transfer (RT) equations. The model ignores scattering except for the effect of the scatterers in the attenuation of the emission through the vegetation. Application of the tau-omega model to data acquired during airborne and ground-based campaigns over the years has solidified scientific understanding of microwave interactions with different landscapes. In particular, shrubland, grasslands, agricultural crops, and light to moderate vegetation have been investigated. Its applicability to areas with a significant tree fraction is unknown. The first order scattering model is based on an iterative solution of the RT equation up to the first order. The first order solution is obtained by substituting the zeroth-order solution into the scattering source term and then solving the resulting radiative transfer equations. This formulation adds a new scattering term to the tau-omega model. It represents emission by particles in the layer and emission by the ground that is scattered once by particles in the layer. The resulting model represents an improvement over the standard zero-order solution (the tau-omega model) since it accounts for the scattered vegetation and ground radiation that can have a pronounced effect on the observed brightness temperature. The third model is based on the Peake formulation in conjunction with the DBA. The procedure for calculation of forest emission is accomplished by first calculating the bistatic scattering cross section for each type of scatterer, then by using the DBA to calculate specular albedo of the ground and the diffused albedo of the layer. Once the albedos are determined, Peake s principle relating active and passive problems can be used to determine the effective emissivity of the forest layer.

Kurum, Mehmet↗

Estimation of Forest Canopy Leaf Area Index Using Directional ASAS Measurements

Coniferous forest canopy reflectance was derived from radiance data collected the Advanced Solid-State Array Spectroradiometer (ASAS). Red and Near-InfraRed (NIR) responses were examined as a function of view zenith angle (theta(sub v)), solar zenith angle (theta(sub s)), and site characteristics. Relationships were formulated between the Normalized Difference Vegetation Index (NDVI) and canopy Leaf Area Index (LAI). It is suggested that the offnadir NDVI is a more stable estimator of LAI than is the nadir-view NDVI.

Johnson, Lee F.↗

Incorporating Plant Phenology Dynamics in a Biophysical Canopy Model

The Multi-Layer Canopy Model (MLCan) is a vegetation model created to capture plant responses to environmental change. Themodel vertically resolves carbon uptake, water vapor and energy exchange at each canopy level by coupling photosynthesis, stomatal conductance and leaf energy balance. The model is forced by incoming shortwave and longwave radiation, as well as near-surface meteorological conditions. The original formulation of MLCan utilized canopy structural traits derived from observations. This project aims to incorporate a plant phenology scheme within MLCan allowing these structural traits to vary dynamically. In the plant phenology scheme implemented here, plant growth is dependent on environmental conditions such as air temperature and soil moisture. The scheme includes functionality that models plant germination, growth, and senescence. These growth stages dictate the variation in six different vegetative carbon pools: storage, leaves, stem, coarse roots, fine roots, and reproductive. The magnitudes of these carbon pools determine land surface parameters such as leaf area index, canopy height, rooting depth and root water uptake capacity. Coupling this phenology scheme with MLCan allows for a more flexible representation of the structure and function of vegetation as it responds to changing environmental conditions.

environmental changes↗

Demonstration of Repeat-Pass POLINSAR Using UAVSAR: The RMOG Model

In this paper we show our first POLINSAR results using the Uninhabited Aerial Vehicle Synthetic Aperture Radar (UAVSAR) developed by the Jet Propulsion Laboratory (JPL). UAVSAR is a L-band repeat-pass polarimetric and interferometric system designed for measuring vegetation structure and monitoring crustal deformations. In order to extract canopy height from POLINSAR data and account for temporal decorrelation, we formulate a physical model of the temporal-volumetric coherence, random motion over ground (RMOG) model. Canopy height extracted from single-baseline UAVSAR data using the RMOG model is shown to be in agreement with canopy height measured by the Land, Vegetation, and Ice Sensor (LVIS) lidar.

polarimetry↗

Hyperspectral Reflectance for Measuring Canopy‐Level Nutrients and Photosynthesis in a Salt Marsh

Abstract Salt marsh ecosystems are underrepresented in process‐based models due to their unique location across the terrestrial–aquatic interface. Particularly, the role of leaf nutrients on canopy photosynthesis (F A ) remains unclear, despite their relevance for regulating vegetation growth. We combined multiyear information of canopy‐level nutrients and eddy covariance measurements with canopy surface hyperspectral remote sensing (CSHRS) to quantify the spatial and temporal variability of F A in a temperate salt marsh. We found that F A showed a positive relationship with canopy‐level N at the ecosystem scale and for areas dominated by Spartina cynosuroides , but not for areas dominated by short S. alterniflora . F A showed a positive relationship with canopy‐level P, K, and Na, but a negative relationship with Fe, for areas associated with S. cynosuroides , S. alterniflora , and at the ecosystem scale. We used partial least squares regression (PLSR) with CSHRS and found statistically significant data–model agreements to predict canopy‐level nutrients and F A . The red‐edge electromagnetic region and ∼770 nm showed the highest contribution of variance in PLSR models for canopy‐level nutrients and F A , but we propose that underlying sediment biogeochemistry can complicate interpretation of reflectance measurements. Our findings highlight the relevance of spatial variability in salt marshes vegetation and the promising application of CSHRS for linking information of canopy‐level nutrients with F A . We call for further development of canopy surface hyperspectral methods and analyses across salt marshes to improve our understanding of how these ecosystems will respond to global environmental change.

Environmental Sciences & Ecology↗

Roles of Urban Tree Canopy and Buildings in Urban Heat Island Effects: Parameterization and Preliminary Results

Urban heat island (UHI) effects can strengthen heat waves and air pollution episodes. In this study, the dampening impact of urban trees on the UHI during an extreme heat wave in the Washington, D.C., and Baltimore, Maryland, metropolitan area is examined by incorporating trees, soil, and grass into the coupled Weather Research and Forecasting model and an urban canopy model (WRF-UCM). By parameterizing the effects of these natural surfaces alongside roadways and buildings, the modified WRF-UCM is used to investigate how urban trees, soil, and grass dampen the UHI. The modified model was run with 50% tree cover over urban roads and a 10% decrease in the width of urban streets to make space for soil and grass alongside the roads and buildings. Results show that, averaged over all urban areas, the added vegetation decreases surface air temperature in urban street canyons by 4.1 K and road-surface and building-wall temperatures by 15.4 and 8.9 K, respectively, as a result of tree shading and evapotranspiration. These temperature changes propagate downwind and alter the temperature gradient associated with the Chesapeake Bay breeze and, therefore, alter the strength of the bay breeze. The impact of building height on the UHI shows that decreasing commercial building heights by 8 m and residential building heights by 2.5 m results in up to 0.4-K higher daytime surface and near-surface air temperatures because of less building shading and up to 1.2-K lower nighttime temperatures because of less longwave radiative trapping in urban street canyons.

urban vegetation↗

Utilizing In Situ Directional Hyperspectral Measurements to Validate Bio-Indicator Simulations for a Corn Crop Canopy

Two radiative transfer canopy models, SAIL and the two-layer Markov-Chain Canopy Reflectance Model (MCRM), were coupled with in situ leaf optical properties to simulate canopy-level spectral band ratio vegetation indices with the focus on the photochemical reflectance index in a cornfield. In situ hyperspectral measurements were made at both leaf and canopy levels. Leaf optical properties were obtained from both sunlit and shaded leaves. Canopy reflectance was acquired for eight different relative azimuth angles (psi) at three different view zenith angles (Theta (sub v)), and later used to validate model outputs. Field observations of photochemical reflectance index (PRI) for sunlit leaves exhibited lower values than shaded leaves, indicating higher light stress. Canopy PRI expressed obvious sensitivity to viewing geometry, as a function of both Theta (sub v) and psi . Overall, simulations from MCRM exhibited better agreements with in situ values than SAIL. When using only sunlit leaves as input, the MCRM-simulated PRI values showed satisfactory correlation and RMSE, as compared to in situ values. However, the performance of the MCRM model was significantly improved after defining a lower canopy layer comprised of shaded leaves beneath the upper sunlit leaf layer. Four other widely used band ratio vegetation indices were also studied and compared with the PRI results. MCRM simulations were able to generate satisfactory simulations for these other four indices when using only sunlit leaves as input; but unlike PRI, adding shaded leaves did not improve the performance of MCRM. These results support the hypothesis that the PRI is sensitive to physiological dynamics while the others detect static factors related to canopy structure. Sensitivity analysis was performed on MCRM in order to better understand the effects of structure related parameters on the PRI simulations. Leaf area index (LAI) showed the most significant impact on MCRM-simulated PRI among the parameters studied. This research shows the importance of hyperspectral and narrow band sensor studies, and especially the necessity of including the green wavelengths (e.g., 531 nm) on satellites proposing to monitor carbon dynamics of terrestrial ecosystems.

Cheng, Yen-Ben↗

A brief description of the simple biosphere model (SiB)

A biosphere model for calculating the transfer of energy, mass, and momentum between the atmosphere and the vegetated surface of the Earth was designed for atmospheric general circulation models. An upper vegetation layer represents the perennial canopy of trees or shrubs, a lower layer represents the annual ground cover of grasses and other herbacious species. The local coverage of each vegetation layer may be fractional or complete but as the individual vegetation elements are considered to be evenly spaced, their root systems are assumed to extend uniformly throughout the entire grid-area. The biosphere has seven prognostic physical-state variables: two temperatures (one for the canopy and one for the ground cover and soil surface); two interception water stores (one for the canopy and one for the ground cover); and three soil moisture stores (two of which can be reached by the vegetation root systems and one underlying recharge layer into and out of which moisture is transferred only by hydraulic diffusion).

Sellers, P. J.↗

Efficacy and Costs of Restoring Wetland Breeding Habitat for Imperiled Amphibians in the Southeastern U.S.

Herbaceous isolated wetlands in the North American Southeastern Coastal Plain are important breeding sites for many imperiled amphibians. However, most are degraded from alterations to historic fire disturbance and hydrologic regimes. Without fire, encroaching woody vegetation can transition wetlands to more terrestrial conditions and negatively impact amphibian breeding habitat, yet few studies have experimentally tested the efficacy, cost, or temporal requirement of current methods to restore herbaceous wetland vegetation. Here, we tested the interaction of manipulating wetland canopy and leaf litter/duff to promote herbaceous vegetation within one year (i.e., one breeding season) in degraded herbaceous wetlands in South Carolina. We assessed plant response via herbaceous cover, composition, and species similarity to the wetland seed bank and then related treatment performance to treatment cost. Removing trees combined with burning, disturbing, or removing duff significantly increased herbaceous cover and proportions of wetland plants and graminoids. Removing trees alone did not improve herbaceous cover compared to closed-canopy controls, and manipulating duff alone had limited positive effects on plant cover and composition. The most expensive yet effective treatment was Tree Removal-Duff Removal, while Tree Removal-Duff Disturbance was the most cost-effective. At a minimum, we recommend removing trees and burning to kickstart herbaceous recovery. Promisingly, comparisons of our data with previous seed bank studies from these same wetlands indicate there was limited seed bank attrition during 30 years of woody encroachment. Results from this study should aid practitioners in choosing wetland restoration techniques to better conserve at-risk species in the Southeastern Coastal Plain.

54 ENVIRONMENTAL SCIENCES↗

Mapping Temperate Forest Phenology Using Tower, UAV, and Ground-Based Sensors

Phenology is a distinct marker of the impacts of climate change on ecosystems. Accordingly, monitoring the spatiotemporal patterns of vegetation phenology is important to understand the changing Earth system. A wide range of sensors have been used to monitor vegetation phenology, including digital cameras with different viewing geometries mounted on various types of platforms. Sensor perspective, view-angle, and resolution can potentially impact estimates of phenology. We compared three different methods of remotely sensing vegetation phenology—an unoccupied aerial vehicle (UAV)-based, downward-facing RGB camera, a below-canopy, upward-facing hemispherical camera with blue (B), green (G), and near-infrared (NIR) bands, and a tower-based RGB PhenoCam, positioned at an oblique angle to the canopy—to estimate spring phenological transition towards canopy closure in a mixed-species temperate forest in central Virginia, USA. Our study had two objectives: (1) to compare the above- and below-canopy inference of canopy greenness (using green chromatic coordinate and normalized difference vegetation index) and canopy structural attributes (leaf area and gap fraction) by matching below-canopy hemispherical photos with high spatial resolution (0.03 m) UAV imagery, to find the appropriate spatial coverage and resolution for comparison; (2) to compare how UAV, ground-based, and tower-based imagery performed in estimating the timing of the spring phenological transition. We found that a spatial buffer of 20 m radius for UAV imagery is most closely comparable to below-canopy imagery in this system. Sensors and platforms agree within +/− 5 days of when canopy greenness stabilizes from the spring phenophase into the growing season. We show that pairing UAV imagery with tower-based observation platforms and plot-based observations for phenological studies (e.g., long-term monitoring, existing research networks, and permanent plots) has the potential to scale plot-based forest structural measures via UAV imagery, constrain uncertainty estimates around phenophases, and more robustly assess site heterogeneity.

Jeff W. Atkins↗

Tracking Seasonal and Interannual Variability in Photosynthetic Downregulation in Response to Water Stress at a Temperate Deciduous Forest

Abstract The understanding and modeling of photosynthetic dynamics affected by climate variability can be highly uncertain. In this paper, we examined a well‐characterized eddy covariance site in a drought‐prone temperate deciduous broadleaf forest combining tower measurements and satellite observations. We find that an increase in spring temperature usually leads to enhanced spring gross primary production (GPP), but a GPP reduction in late growing season due to water limitation. We evaluated how well a coupled fluorescence‐photosynthesis model (SCOPE) and satellite data sets track the interannual and seasonal variations of tower GPP from 2007 to 2016. In SCOPE, a simple stress factor scaling of Vcmax as a linear function of observed predawn leaf water potential ( ψ pd ) shows a good agreement between modeled and measured interannual variations in both GPP and solar‐induced chlorophyll fluorescence (SIF) from the Global Ozone Monitoring Experiment‐2 (GOME‐2). The modeled and satellite‐observed changes in SIF yield are ~30% smaller than corresponding changes in light use efficiency (LUE) under severe stress, for which a common linear SIF to GPP scaling would underestimate the stress reduction in GPP. Overall, GOME‐2 SIF tracks interannual tower GPP variations better than satellite vegetations indices (VIs) representing canopy “greenness.” However, it is still challenging to attribute observed SIF variations unequivocally to greenness or physiological changes due to large GOME‐2 footprint. Higher‐resolution SIF data sets (e.g., TROPOMI) already show the potential to well capture the downregulation of late‐season GPP and could pave the way to better disentangle canopy structural and physiological changes in the future.

He, Liyin↗

Effects of vegetation on passive microwave estimates of soil moisture

Data collected over plots using a microwave radiometer with a wavelength of 21 cm were used to evaluate a theoretical model of the effect of vegetative cover on the emission of soils. The theoretical model was used as a basis of a simplified model which predicts the emissivity of a soil-vegetation complex with a full canopy cover. This model, when transformed to predict soil moisture, requires measurements of the microwave brightness temperature, surface temperature and vegetation biomass. Since surface temperature can be determined using thermal infrared measurements and vegetation biomass could be estimated with visible and near infrared measurements, the simplified model could be applied using only remotely sensed data.

Jackson, T. J.↗