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At least 451 records · Page 25

Basic properties and models of solar prominences

Prominences are relatively cool (10,000 K) and dense plasma clouds which may persist for 100 days or more in the midst of the much hotter (1 million K) and more tenuous (10 exp 9/cu cm) corona. Many observations imply that the magnetic field in and around prominences is responsible both for isolating prominences from the corona and for supporting them against gravity. It is not at all obvious how the magnetic field can do both these tasks, but the limited theoretical models that are available suggest that a magnetic-flux rope is involved. Using a new analytical model, it is argued that the flux rope could also play a key role in the eruption of a prominence by supplying the magnetic energy necessary to drive the prominence outwards.

Forbes, T. G.↗

A Modular, Portable Model of Image Fidelity

There is a persistent need for a trustworthy model of perceptual image fidelity, especially in applications such as image compression and display design. A fidelity model provides a measure of the visual discriminability of two images. Ahumada has previously shown that the existing fidelity models may be categorized according to their inclusion of various canonical properties, such as a contrast sensitivity function, spatial frequency channels, etc. This suggests that research would be aided by the availability of a modular model, in which these components could be easily inserted or removed. A further impediment to research in this area has been that most models are written in low-level languages and are consequently large, non-portable, and difficult to understand, modify, and maintain. We therefore believe research would also be aided by models written in high-level languages. To serve both of these purposes, and to honor our conference host for his lifetime dedication to the problem of image quality. Global brightness and its effect on perceptual image quality. We offer a modular model written in the high-level language Mathematica. We will demonstrate this model and show how it may be modified.

Watson, Andrew B.↗

Ar-39-Ar-40 Ages of Euerites and the Thermal History of Asteroid 4-Vesta

Eucrite meteorites are igneous rocks that derive from a large asteroid, probably 4 Vesta. Prior studies have shown that after eucrites formed, most were subsequently metamorphosed to temperatures up to equal to or greater than 800 C, and much later many were brecciated and heated by large impacts into the parent body surface. The uncommon basaltic, unbrecciated eucrites also formed near the surface but presumably escaped later brecciation, whereas the cumulate eucrites formed at depth where metamorphism may have persisted for a considerable period. To further understand the complex HED parent body thermal history, we determined new Ar-39-Ar-40 ages for nine eucrites classified as basaltic but unbrecciated, six eucrites classified as cumulate, and several basaltic-brecciated eucrites. Relatively precise Ar-Ar ages of two cumulate eucrites (Moama and EET87520) and four unbrecciated eucrites give a tight cluster at 4.48 +/1 0.01 Gyr. Ar-Ar ages of six additional unbrecciated eucrites are consistent with this age, within their larger age uncertainties. In contrast, available literature data on Pb-Pb isochron ages of four cumulate eucrites and one unbrecciated eucrite vary over 4.4-4.515 Gyr, and Sm-147 - Nd-143 isochron ages of four cumulate and three unbrecciated eucrites vary over 4.41-4.55 Gyr. Similar Ar-Ar ages for cumulate and unbrecciated eucrites imply that cumulate eucrites do not have a younger formation age than basaltic eucrites, as previously proposed. Rather, we suggest that these cumulate and unbrecciated eucrites resided at depth where parent body temperatures were sufficiently high to cause the K-Ar and some other chronometers to remain open diffusion systems. From the strong clustering of Ar-Ar ages at approximately 4.48 Gyr, we propose that these meteorites were excavated from depth in a single large impact event approximately 4.48 Gyr ago, which quickly cooled the samples and started the K-Ar chronometer. A large (approximately 460 km) crater postulated to exist on Vesta may be the source of these eucrites and of many smaller asteroids thought to be spectrally or physically associated with Vesta. Some Pb-Pb and Sm-Nd ages of cumulate and unbrecciated eucrites are consistent with the 4.48 Gyr Ar-Ar age, and the few older Pb-Pb and Sm-Nd ages may reflect isotopic closure prior to the large cratering event. One cumulate eucrite gives an Ar-Ar age of 4.25 Gyr; three additional cumulate eucrites give Ar-Ar ages of 3.4-3.7 Gyr; and two unbrecciated eucrites give Ar-Ar ages of approximately 3.55 Gyr. We attribute these younger ages to later impact heating. In addition, we find Ar-Ar impact-reset ages of several brecciated eucrites and eucritic clasts in howardites to fall in the range of 3.5-4.1 Gyr. Among these, Piplia Kalan, the first eucrite to show evidence for extinct 26 Al, was strongly impact heated approximately3.5 Gyr ago. When these data are combined with eucrite Ar-Ar ages in the literature, they confirm the previous suggestion that several large impact heating events occurred on Vesta over the time period approximately 4.1-3.4 Gyr ago. The onset of major impact heating may have occurred at similar times for both Vesta and the Moon, but impact heating appears to have persisted to a somewhat later time on Vesta compared to the Moon.

Bogard, Donald D.↗

NLRP3 inflammasome inhibition attenuates silica-induced epithelial to mesenchymal transition (EMT) in human bronchial epithelial cells

Highlights: • Silica challenge dramatically induced EMT in line with NLRP3 inflammasome activation in 16HBE cells. • Genetic or pharmacological inhibition of NLRP3 inflammasome attenuated silica-induced EMT. • TAK1-MAPK-Snail/NF-κB pathway was involved in NLRP3 inflammasome mediated EMT process. • Pirfenidone exerted remarkable anti-EMT effect, which might be at least partially owing to its suppression of NLRP3 inflammasome. Silicosis is an incurable and progressive lung disease characterized by chronic inflammation and fibroblasts accumulation. Studies have indicated a vital role for epithelial-mesenchymal transition (EMT) in fibroblasts accumulation. NLRP3 inflammasome is a critical mediator of inflammation in response to a wide range of stimuli (including silica particles), and plays an important role in many respiratory diseases. However, whether NLRP3 inflammasome regulates silica-induced EMT remains unknown. Our results showed that silica induced EMT in human bronchial epithelial cells (16HBE cells) in a dose- and time-dependent manner. Meanwhile, silica persistently activated NLRP3 inflammasome as indicated by continuously elevated extracellular levels of interleukin-1β (IL-1β) and IL-18. NLRP3 inflammasome inhibition by short hairpin RNA (shRNA)-mediated knockdown of NLRP3, selective inhibitor MCC950, and caspase-1 inhibitor Z-YVAD-FMK attenuated silica-induced EMT. Western blot analysis indicated that TAK1-MAPK-Snail/NF-κB pathway involved NLRP3 inflammasome-mediated EMT. Moreover, pirfenidone, a commercially and clinically available drug approved for treating idiopathic pulmonary fibrosis (IPF), effectively suppressed silica-induced EMT of 16HBE cells in line with NLRP3 inflammasome inhibition. Collectively, our results indicate that NLRP3 inflammasome is a promising target for blocking or retarding EMT-mediated fibrosis in pulmonary silicosis. On basis of this mechanism, pirfenidone might be a potential drug for the treatment of silicosis.

60 APPLIED LIFE SCIENCES↗

Ultrasensitive multi-species detection of CRISPR-Cas9 by a portable centrifugal microfluidic platform

The discovery of the RNA-guided DNA nuclease CRISPR-Cas9 has enabled the targeted editing of genomes from diverse organisms, but the permanent and inheritable nature of genome modification also poses immense risks. The potential for accidental exposure, malicious use, or undesirable persistence of Cas9 therapeutics and off-target genome effects highlight the need for detection assays. Here we report a centrifugal microfluidic platform for the measurement of both Cas9 protein levels and nuclease activity. Because Cas9 from many bacterial species have been adapted for biotechnology applications, we developed the capability to detect Cas9 from the widely-used S. pyogenes, as well as S. aureus, N. meningitidis, and S. thermophilus using commercially-available antibodies. Further, we show that the phage-derived anti-CRISPR protein AcrIIC1, which binds to Cas9 from several species, can be used as a capture reagent to broaden the species range of detection. Finally, as genome modification generally requires Cas9 nuclease activity, a fluorescence-based sedimentation nuclease assay was also incorporated to allow the sensitive and simultaneous measurement of both Cas9 protein and activity in a single biological sample.

59 BASIC BIOLOGICAL SCIENCES↗

Droughts Reduce Growth Rates and Increase Vulnerability to Increasingly Frequent and Severe Drying Events in an Aquatic Ectotherm

Many aquatic organisms are experiencing increasingly severe and frequent droughts and drying events. Simultaneously, drought effects are carrying over to nondrought years as ecosystems remain in incomplete states of recovery. Aquatic organisms are thus faced with fewer sequential years under degraded environmental conditions to prepare for increasingly severe droughts and potential drying events. We assessed the effect of droughts and sex on the growth, mass, and mass-dependent estivation potential of long-lived aquatic salamanders (Greater Sirens, Siren lacertina) that estivate during drying events brought on by severe droughts. We calculated growth rates of S. lacertina based on mark–recapture data spanning 11 yr of a severe drought local minimum (of past 50 yr) in the southeastern United States. Sirens showed a distinct seasonal gain in body length and mass from March through September and little growth for the rest of the year. Gains during the growth season were strongly reduced by drought conditions. Although male and female sirens were predicted to reach a similar maximum body size, females grew much slower. Recruitment into drying event ‘‘size refugia’’ is constrained by drying event severity (determines minimum size required), frequency (determines available time between events to grow), and environmental conditions between drying events (determines the rate of growth). Thus, increases in drying event severity and frequency will require faster growth to a larger body size for successful recruitment into a size class that is resistant to drying events. The slower growth of females and reduction of growth during suboptimal years (mild to moderate droughts) suggest that the life history strategy of Greater Sirens for persisting through drying events potentially increases their demographic susceptibility to the predicted effects of climate change.

59 BASIC BIOLOGICAL SCIENCES↗

Global Geodetic Signatures of the Antarctic Ice Sheet

Four scenarios of present day Antarctic ice sheet mass change are developed from comprehensive reviews of the available glaciological and oceanographic evidence. The gridded scenarios predict widely varying contributions to secular sea level change xi ranging from -1.1 to 0.45 mm/yr, and predict polar motion m and time-varying low-degree gravitational coefficients J(sub l) that differ significantly from earlier estimates. A reasonably linear relationship between the rate of sea level change from Antarctica xi(sub A) and the predicted Antarctic J(sub l) is found for the four scenarios. This linearity permits a series of forward models to be constructed that incorporate the effects of ice mass changes in Antarctica, Greenland, and distributed smaller glaciers, as well as postglacial rebound (assuming the ICE-3G deglaciation history), with the goal of obtaining optimum reconciliation between observed constraints on J(sub l) and sea level rise xi. Numerous viable combinations of lower mantle viscosity and hydrologic sources are found that safely "observed" in the range of 1 to 2-2.5 mm/yr and observed J(sub l) for degrees 2, 3, and 4. In contrast, rates of global sea level rise above 2.5 mm/yr are inconsistent with available J(sub l) observations. The successful composite models feature a pair of lower mantle viscosity solutions arising from the sensitivity of J(sub l) to glacial rebound. The paired values are well separated at xi = 1 mm/yr, but move closer together as xi is increased, and, in fact, merge around xi = 2 - 2.5 mm/yr, revealing an intimate relation between xi and preferred lower mantle viscosity. This general pattern is quite robust and persists for different J(sub l) solutions, for variations in source assumptions, and for different styles of lower mantle viscosity stratification. Tighter J(sub l) constraints for l greater than 2 may allow some viscosity stratification schemes and source assumptions to be excluded in the future. For a given total observed xi the sea level rise from Antarctica xi(sub A) is tightly constrained and ranges from 0 to + 1 mr/yr (corresponding to an ablating ice sheet) as estimates of xi are raised from 1 to 2.5 mm/yr. However, when the degree 3 zonal harmonic constraint is removed, the solutions show little sensitivity to Antarctic mass balance, emphasizing the need for a well determined odd-degree secular zonal harmonic for determining polar ice mass balance.

James, Thomas S.↗

Targeting GPUs with OpenMP directives on Summit: A simple and effective Fortran experience

We use OpenMP to target hardware accelerators (GPUs) on Summit, a newly deployed supercomputer at the Oak Ridge Leadership Computing Facility (OLCF), demonstrating simplified access to GPU devices for users of our astrophysics code GenASiS and useful speedup on a sample fluid dynamics problem. We modify our workhorse class for data storage to include members and methods that significantly streamline the persistent allocation of and association to GPU memory. Users offload computational kernels with OpenMP target directives that are rather similar to constructs already familiar from multi-core parallelization. In this initial example we ask, “With a given number of Summit nodes, how fast can we compute with and without GPUs?”, and find total wall time speedups of ~ 12X. We also find reasonable weak scaling up to 8000 GPUs (1334 Summit nodes). We make available the source code from this work at https://github.com/GenASiS/GenASiS_Basics.

97 MATHEMATICS AND COMPUTING↗

Ballistic Phonon Transport in Holey Silicon

When the size of semiconductors is smaller than the phonon mean free path, phonons can carry heat with no internal scattering. Ballistic phonon transport has received attention for both theoretical and practical aspects because Fourier's law of heat conduction breaks down and the heat dissipation in nanoscale transistors becomes unpredictable in the ballistic regime. While recent experiments demonstrate room-temperature evidence of ballistic phonon transport in various nanomaterials, the thermal conductivity data for silicon in the length scale of 10-100 nm is still not available due to experimental challenges. In this work, we show ballistic phonon transport prevails in the cross-plane direction of holey silicon from 35 to 200 nm. The thermal conductivity scales linearly with the length (thickness) even though the lateral dimension (neck) is as narrow as 20 nm. We assess the impact of long-wavelength phonons and predict a transition from ballistic to diffusive regime using scaling models. Our results support strong persistence of long-wavelength phonons in nanostructures and are useful for controlling phonon transport for thermoelectrics and potential phononic applications.

77 NANOSCIENCE AND NANOTECHNOLOGY↗

Surface melting over the Greenland ice sheet from enhanced resolution passive microwave brightness temperatures (1979–2019)

Surface melting is a major component of the Greenland ice sheet (GrIS) surface mass balance, affecting sea level rise through direct runoff and the modulation on ice dynamics and hydrological processes, supraglacially, englacially and subglacially. Passive microwave (PMW) brightness temperature observations are of paramount importance in studying the spatial and temporal evolution of surface melting in view of their long temporal coverage (1979–to date) and high temporal resolution (daily). However, a major limitation of PMW datasets has been the relatively coarse spatial resolution, being historically of the order of tens of kilometres. Here, we use a newly released passive microwave dataset (37 GHz, horizontal polarization) made available through the NASA MeASUREs program to study the spatiotemporal evolution of surface melting over the GrIS at an enhanced spatial resolution of 3.125 Km. We assess the outputs of different detection algorithms through data collected by Automatic Weather Stations (AWS) and the outputs of the MAR regional climate model. We found that surface melting is well captured using a dynamic algorithm based on the outputs of MEMLS model, capable to detect sporadic and persistent melting. Our results indicate that, during the reference period 1979–2019 (1988–2019), surface melting over the GrIS increased in terms of both duration, up to ~4.5 (2.9) days per decade, and extension, up to 6.9 % (3.6 %) of the GrIS surface extent per decade, according to the MEMLS algorithm. Furthermore, the melting season has started up to ~4 (2.5) days earlier and ended ~7 (3.9) days later per decade. We also explored the information content of the enhanced resolution dataset with respect to the one at 25 km and MAR outputs through a semi-variogram approach. We found that the enhanced product is more sensitive to local scale processes, hence confirming the potential interest of this new enhanced product for studying surface melting over Greenland at a higher spatial resolution than the historical products and monitor its impact on sea level rise. This offers the opportunity to improve our understanding of the processes driving melting, to validate modelled melt extent at high resolution and potentially to assimilate this data in climate models.

Surface melting↗

ENVnet provides a global molecular resource of dissolved organic matter

Dissolved organic matter (DOM) is an important component of Earth's carbon cycle and one of the planet's most chemically diverse pools, yet the molecular structures of its constituents remain largely unresolved. This limitation has hindered our ability to link DOM composition to microbial processes and ecosystem function. Here we present ENVnet, a global molecular repository built from tandem mass spectrometry data collected across 13 terrestrial and aquatic environment types, including 419 newly generated samples that expand publicly available DOM metabolomics data and cover previously underrepresented environments. By computationally deconvolving chimeric mass spectra, a longstanding challenge in environmental metabolomics, we recover high-quality fragmentation data for >22,000 distinct molecular features (defined by a specific precursor mass and fragmentation pattern). Using ENVnet, we uncover conserved and environment-specific molecular patterns in DOM composition and underlying biogeochemical processes. We also use molecular features encoded in ENVnet to train predictive models of DOM persistence, allowing molecular-level assessment of microbial turnover in independent systems.

54 ENVIRONMENTAL SCIENCES↗

Implementing Production Grids

We have presented the essence of experience gained in building two production Grids, and provided some of the global context for this work. As the reader might imagine, there were a lot of false starts, refinements to the approaches and to the software, and several substantial integration projects (SRB and Condor integrated with Globus) to get where we are today. However, the point of this paper is to try and make it substantially easier for others to get to the point where Information Power Grids (IPG) and the DOE Science Grids are today. This is what is needed in order to move us toward the vision of a common cyber infrastructure for science. The author would also like to remind the readers that this paper primarily represents the actual experiences that resulted from specific architectural and software choices during the design and implementation of these two Grids. The choices made were dictated by the criteria laid out in section 1. There is a lot more Grid software available today that there was four years ago, and various of these packages are being integrated into IPG and the DOE Grids. However, the foundation choices of Globus, SRB, and Condor would not be significantly different today than they were four years ago. Nonetheless, if the GGF is successful in its work - and we have every reason to believe that it will be - then in a few years we will see that the 28 functions provided by these packages will be defined in terms of protocols and MIS, and there will be several robust implementations available for each of the basic components, especially the Grid Common Services. The impact of the emerging Web Grid Services work is not yet clear. It will likely have a substantial impact on building higher level services, however it is the opinion of the author that this will in no way obviate the need for the Grid Common Services. These are the foundation of Grids, and the focus of almost all of the operational and persistent infrastructure aspects of Grids.

Johnston, William E.↗

Anastomosing hemangioma of the liver: a case series

Purpose: To report imaging and pathologic features of five pathologically proven anastomosing hemangiomas of the liver (AHL). Methods: A retrospective review for AHL was conducted using our institutional database from 6/2004 to 3/2018. Histology proven AHL with radiologic imaging available for review were included. A total of five patients who met our criteria were identified from our institutional database. Computed tomography, ultrasound, and magnetic resonance imaging findings, including location, size, attenuation/signal intensity, enhancement characteristics, and additional imaging data were reviewed. The clinical and pathological data were also reviewed. Results: The imaging characteristics of AHL are variable, but features such as peripheral or diffuse hyperintensity on diffusion weighted imaging, arterial hyperenhancement without globular interrupted enhancement, and persistent enhancement without complete filling in the delayed phases were more characteristic of AHL. Imaging also demonstrated a lack of aggressive features. Conclusions: AHL present a diagnostic dilemma as they can mimic more malignant lesions, such as angiosarcoma, both on imaging and at pathology. While the imaging characteristics of AHL are variable, there are some features which can help distinguish AHL from other liver lesions. When the diagnosis of anastomosing hemangioma is known, the management of choice is primarily surveillance, as intervention can cause unnecessary morbidity, and no degeneration to malignancy has been identified to date.

62 RADIOLOGY AND NUCLEAR MEDICINE↗

Shifting temporal dynamics of human mobility in the United States

In this paper we analyze the average hourly temporal dynamics of human mobility in the United States from 2019 to 2020. We discuss how large decreases in human mobility nonuniformly effect the daily temporal dynamics of aggregate human behavior. The data used are weekly activity patterns for POIs from 2019 to 2020 in the United States, provided by SafeGraph and made openly available to academic and research institutions. We use clustering methods to create metrics describing how human activity changes throughout the day/week at the county and national levels. In response to significant mobility reductions starting March 2020, daily temporal patterns of human activity changed nonuniformly. Morning activity started later, and evening activity started earlier in 2020 compared to 2019, and temporal behavioral patterns on weekdays began to look more similar to weekends. The changes in daily temporal behavior persisted throughout the year even as total mobility levels recovered. The results provide insights on the changes in human behavior in response covid-19 policies and illustrate influences on social systems, health, and transportation networks.

99 GENERAL AND MISCELLANEOUS↗

Small-scale properties from exascale computations of turbulence on a $\mathbf{32\,768^3}$ periodic cube

To study the physics of small-scale properties of homogeneous isotropic turbulence at increasingly high Reynolds numbers, direct numerical simulation results have been obtained for forced isotropic turbulence at Taylor-scale Reynolds number R λ = 2500 on a 32 768 3 three-dimensional periodic domain using a GPU pseudo-spectral code on a 1.1 exaflop GPU supercomputer (Frontier). These simulations employ the multi-resolution independent simulation (MRIS) technique (Yeung & Ravikumar 2020, Phys. Rev. Fluids, vol. 5, 110517) where ensemble averaging is performed over multiple short segments initiated from velocity fields at modest resolution, and subsequently taken to higher resolution in both space and time. Reynolds numbers are increased by reducing the viscosity with the large-scale forcing parameters unchanged. Although MRIS segments at the highest resolution for each Reynolds number last for only a few Kolmogorov time scales, small-scale physics in the dissipation range is well captured – for instance, in the probability density functions and higher moments of the dissipation rate and enstrophy density, which appear to show monotonic trends persisting well beyond the Reynolds number range in prior works in the literature. Attainment of range of length and time scales consistent with classical scaling also reinforces the potential utility of the present high-resolution data for studies of short-time-scale turbulence physics at high Reynolds numbers where full-length simulations spanning many large-eddy time scales are still not accessible. A single snapshot of the 32 768 3 data is publicly available for further analyses via the Johns Hopkins Turbulence Database.

intermittency↗

Evapotranspiration depletes groundwater under warming over the contiguous United States

A warmer climate increases evaporative demand. However, response to warming depends on water availability. Existing earth system models represent soil moisture but simplify groundwater connections, a primary control on soil moisture. Here we apply an integrated surface-groundwater hydrologic model to evaluate the sensitivity of shallow groundwater to warming across the majority of the US. We show that as warming shifts the balance between water supply and demand, shallow groundwater storage can buffer plant water stress; but only where shallow groundwater connections are present, and not indefinitely. As warming persists, storage can be depleted and connections lost. Similarly, in the arid western US warming does not result in significant groundwater changes because this area is already largely water limited. The direct response of shallow groundwater storage to warming demonstrates the strong and early effect that low to moderate warming may have on groundwater storage and evapotranspiration.

54 ENVIRONMENTAL SCIENCES↗

Enhanced North American carbon uptake associated with El Niño

Long-term atmospheric CO 2 mole fraction and δ 13 CO 2 observations over North America document persistent responses to the El Niño–Southern Oscillation. We estimate these responses corresponded to 0.61 (0.45 to 0.79) PgC year –1 more North American carbon uptake during El Niño than during La Niña between 2007 and 2015, partially offsetting increases of net tropical biosphere-to-atmosphere carbon flux around El Niño. Anomalies in derived North American net ecosystem exchange (NEE) display strong but opposite correlations with surface air temperature between seasons, while their correlation with water availability was more constant throughout the year, such that water availability is the dominant control on annual NEE variability over North America. These results suggest that increased water availability and favorable temperature conditions (warmer spring and cooler summer) caused enhanced carbon uptake over North America near and during El Niño.

54 ENVIRONMENTAL SCIENCES↗

Surface-Based Observations of Contrail Occurrence Over the US, Apr. 1993 to Apr. 1994

Surface observers stationed at 19 U.S. Air Force Bases and Army Air Stations recorded the daytime occurrence of contrails and cloud fraction on an hourly basis for the period April 1993 through April 1994. Each observation uses one of four main categories to report contrails as unobserved, non-persistent, persistent, and indeterminate. Additional classification includes the co-occurrence of cirrus with each report. The data cover much of the continental U.S. including locations near major commercial air routes. The mean annual frequency of occurrence in unobstructed viewing conditions is 13 percent for these sites. Contrail occurrence varied substantially with location and season. Most contrails occurred during the winter months and least during the summer with a pronounced minimum during July. Although nocturnal observations are not available, it appears that the contrails have a diurnal variation that peaks during mid morning over most areas. Contrails were most often observed in areas near major commercial air corridors and least often over areas far removed from the heaviest air traffic. A significant correlation exists between mean contrail frequency and aircraft fuel usage above 7 km suggesting predictive potential for assessing future contrail effects on climate.

Minnis, Patrick↗