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At least 451 records · Page 25

A universal mini-vector and an annealing of PCR products (APP)-based cloning strategy for convenient molecular biological manipulations

Currently, the most widely used strategies for molecular cloning are sticky-end ligation-based cloning, TA cloning, blunt-end ligation-based cloning and ligase-independent cloning. In this study we have developed a novel mini-vector pANY1 which can simultaneously meet the requirements of all these cloning strategies. In addition, the selection of appropriate restriction digestion sites is difficult in some cases because of the presence of internal sites. In this study, an annealing of PCR products (APP)-based sticky-end cloning strategy was introduced to avoid this issue. Additionally, false positives occur during molecular cloning, which increases the workload of isolating positive clones. The plasmid pANY1 contains a ccdB cassette between multiple cloning sites, which efficiently avoids these false positives. Therefore, this mini-vector should serve as a useful tool with wide applications in biosciences, agriculture, food technologies, etc.

60 APPLIED LIFE SCIENCES↗

An Advanced Actuator Line Method for Wind Energy Applications and Beyond: Preprint

The actuator line method to represent rotor aerodynamics within computational fluid dynamics has been in use for over a decade. This method applies a body force to the flow field along rotating lines corresponding to the individual rotor blades and employs tabular airfoil data to compute the force distribution. The actuator line method is attractive because compared to blade-resolved simulations, the required mesh is much simpler and the computational cost is lower. This work proposes a higher fidelity variant of the actuator line method meant to fill the space between current actuator line and blade-resolved simulations. It contains modifications in two key areas. The first is that of freestream velocity vector estimation along the line, which is necessary to compute the lift and drag along the line using tabular airfoil data. Most current methods rely on point sampling in which the location of sampling is ambiguous. Here we test a velocity sampling method that uses a properly weighted integral over space, removing this ambiguity. The second area of improvement is the function used to project the one-dimensional actuator line force onto the three-dimensional fluid mesh as a body force. We propose and test a projection function that spreads the force over a region that looks something like a real blade with the hope that it will produce the blade local and near wake flow features with more accuracy and higher fidelity. Our goal is that between these two improvements, not only will the flow field predictions be enhanced, but also the spanwise loading will be made more accurate. We refer to this combination of improvements as the advanced actuator line method. We apply these improvements to two different wind turbine cases. Although there is a strong wind energy motivation in our work, there is no reason these advanced actuator line ideas cannot be used in other applications, such as helicopter rotors.

17 WIND ENERGY↗

A Particle-in-Cell Method for Plasmas with a Generalized Momentum Formulation, Part II: Enforcing the Lorenz Gauge Condition

In a previous paper Christlieb et al. (A particle-in-cell method for plasmas with a generalized momentum formulation, part I: Model formulation, 2024), we developed a new particle-in-cell (PIC) method for the relativistic Vlasov–Maxwell system in which the electromagnetic fields and the equations of motion for the particles were cast in terms of scalar and vector potentials through a Hamiltonian formulation. This new method evolved the potentials under the Lorenz gauge using integral equation methods. New methods to construct spatial derivatives of the potentials that converge at the same rates as the fields were also presented. The new particle method was compared against standard explicit discretizations, including the well-known FDTD-PIC method, for a range of applications involving sheaths and particle beams. Here, this paper extends this new class of methods by focusing on the enforcement the Lorenz gauge condition in both exact and approximate forms using co-located meshes. A time-consistency property of the proposed field solver for the vector potential form of Maxwell’s equations is established, which is shown to preserve the equivalence between the semi-discrete Lorenz gauge condition and the analogous semi-discrete continuity equation. Using this property, we present three methods to enforce a semi-discrete gauge condition. The first method introduces an update for the continuity equation that is consistent with the discretization of the Lorenz gauge condition. Both the finite difference and spectral implementations satisfy this discrete gauge condition to machine precision. The second approach we propose enforces a semi-discrete continuity equation using the boundary integral solution to the field equations. The potential benefit of this approach is that it eliminates spatial derivatives that appear on the particle data, namely the current density, which is often calculated by linear combinations of low-order spline basis functions. This method is ideally suited to boundary integral equation methods that invert multi-dimensional operators without dimensional splitting techniques and will be the subject of future work. The third approach introduces a gauge correcting method that makes direct use of the gauge condition to modify the scalar potential and uses local maps for both the charge and current densities. This results in a gauge error, as the maps do not enforce the continuity equation. The vector potential coming from the current density is taken to be exact, and using the Lorenz gauge, we compute a correction to the scalar potential that makes the two potentials satisfy the gauge condition. This method also enforces the gauge condition to machine precision. We demonstrate two of the proposed methods in the context of periodic domains. Problems defined on bounded domains, including those with complex geometric features remain an ongoing effort. However, this work shows that it is possible to design computationally efficient methods that can effectively enforce the Lorenz gauge condition in a non-staggered PIC formulation.

97 MATHEMATICS AND COMPUTING↗

Super-Alfvénic Propagation and Damping of Reconnection Onset Signatures

The quadrupolar out-of-plane Hall magnetic leld generated during collisionless reconnection propagates away from the x line as a kinetic Alfvén wave (KAW). While it has been shown that this KAW carries substantial Poynting flux and propagates super-Alfvenically, how this KAW damps as it propagates away from the x line is not well understood. In this study, this damping is examined using kinetic particle-in-cell simulations of antiparallel symmetric magnetic reconnection in a one-dimensional current sheet equilibrium. In the reconnection simulations, the KAW wave vector has a typical magnitude comparable to an inverse fluid Larmor radius (effectively an inverse ion Larmor radius) and a direction of 85–89°relative to the local magnetic field. We find that the damping of the reconnection KAW is consistent with linear Landau damping results from a numerical Vlasov dispersion solver. This knowledge allows us to generalize our damping predictions to regions in the magnetotail and solar corona where the magnetic geometry can be approximated as a current sheet. For the magneto tail, the KAW from reconnection will not damp away before propagating the approximately 20 Earth radii associated with global magneto tail distances. For the solar corona, on the other hand, these KAWs will completely damp before reaching the distances comparable to the flare loop length.

79 ASTRONOMY AND ASTROPHYSICS↗

Implicit Large-Eddy Simulation of Single-Injector Cooling Flow

The turbulent heat flux vector plays a critical role in aero-propulsion flow. Currently, traditional RANS based methods do not currently have reliable closures which can accurately predict the turbulent transport of heat. Scale Resolving Simulations can provide critical insight into this fundamental fluid mechanism. Large-eddy Simulations (LES) were performed on the single-hole film-cooling experimental configuration from the recent experiments conducted at NASA Glenn Research Center (GRC)[1]. The experiment of Wernet et al. obtained mean and fluctuating temperatures which can be used to validate LES results predicting the turbulent heat flux vector. The FDL3DI flow solver was used to complete simulations of two blowing ratios of the THX - III dataset. A grid sensitivity study was also performed. Initial LES results show promising agreement between the simulation and experimental measurements.

High-Order methods↗

Precise predictions for same-sign W-boson scattering at the LHC

Vector-boson scattering processes are of great importance for the current run-II and future runs of the Large Hadron Collider. The presence of triple and quartic gauge couplings in the process gives access to the gauge sector of the Standard Model (SM) and possible new-physics contributions there. To test any new-physics hypothesis, sound knowledge of the SM contributions is necessary, with a precision which at least matches the experimental uncertainties of existing and forthcoming measurements. In this article we present a detailed study of the vector-boson scattering process with two positively-charged leptons and missing transverse momentum in the final state. In particular, we first carry out a systematic comparison of the various approximations that are usually performed for this kind of process against the complete calculation, at LO and NLO QCD accuracy. Such a study is performed both in the usual fiducial region used by experimental collaborations and in a more inclusive phase space, where the differences among the various approximations lead to more sizeable effects. Afterwards, we turn to predictions matched to parton showers, at LO and NLO: we show that on the one hand, the inclusion of NLO QCD corrections leads to more stable predictions, but on the other hand the details of the matching and of the parton-shower programs cause differences which are considerably larger than those observed at fixed order, even in the experimental fiducial region. We conclude with recommendations for experimental studies of vector-boson scattering processes.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Measurement of the τ lepton polarization in Z boson decays in proton-proton collisions at $ \sqrt{s} $ = 13 TeV

The polarization of τ leptons is measured using leptonic and hadronic τ lepton decays in Z → τ$^{+}$τ$^{−}$ events in proton-proton collisions at $ \sqrt{s} $ = 13 TeV recorded by CMS at the CERN LHC with an integrated luminosity of 36.3 fb$^{−1}$. The measured τ$^{−}$ lepton polarization at the Z boson mass pole is $ {\mathcal{P}}_{\tau}\left(\textrm{Z}\right) $ = −0.144 ± 0.006 (stat) ± 0.014 (syst) = −0.144 ± 0.015, in good agreement with the measurement of the τ lepton asymmetry parameter of A$_{τ}$ = 0.1439 ± 0.0043 = $ -{\mathcal{P}}_{\tau}\left(\textrm{Z}\right) $ at LEP. The τ lepton polarization depends on the ratio of the vector to axial-vector couplings of the τ leptons in the neutral current expression, and thus on the effective weak mixing angle sin$^{2} {\theta}_{\textrm{W}}^{\textrm{eff}} $, independently of the Z boson production mechanism. The obtained value sin$^{2} {\theta}_{\textrm{W}}^{\textrm{eff}} $ = 0.2319 ± 0.0008(stat) ± 0.0018(syst) = 0.2319 ± 0.0019 is in good agreement with measurements at e$^{+}$e$^{−}$ colliders.[graphic not available: see fulltext]

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Characterization of the atmospheric muon flux in IceCube

Muons produced in atmospheric cosmic ray showers account for the by far dominant part of the event yield in large-volume underground particle detectors. The IceCube detector, with an instrumented volume of about a cubic kilometer, has the potential to conduct unique investigations on atmospheric muons by exploiting the large collection area and the possibility to track particles over a long distance. Through detailed reconstruction of energy deposition along the tracks, the characteristics of muon bundles can be quantified, and individual particles of exceptionally high energy identified. The data can then be used to constrain the cosmic ray primary flux and the contribution to atmospheric lepton fluxes from prompt decays of short-lived hadrons. In this paper, techniques for the extraction of physical measurements from atmospheric muon events are described and first results are presented. The multiplicity spectrum of TeV muons in cosmic ray air showers for primaries in the energy range from the knee to the ankle is derived and found to be consistent with recent results from surface detectors. The single muon energy spectrum is determined up to PeV energies and shows a clear indication for the emergence of a distinct spectral component from prompt decays of short-lived hadrons. The magnitude of the prompt flux, which should include a substantial contribution from light vector meson di-muon decays, is consistent with current theoretical predictions. The variety of measurements and high event statistics can also be exploited for the evaluation of systematic effects. In the course of this study, internal inconsistencies in the zenith angle distribution of events were found which indicate the presence of an unexplained effect outside the currently applied range of detector systematics. The underlying cause could be related to the hadronic interaction models used to describe muon production in air showers.

79 ASTRONOMY AND ASTROPHYSICS↗

Searches with mono-leptons

We explore the implications of the mono-lepton plus missing transverse energy signature at the LHC, and point out its significance on understanding how dark matter interacts with quarks, where the signature arises from dark matter pair production together with a leptonically decaying W boson radiated from the initial state quarks. We derive limits using the existing W' searches at the LHC, and find an interesting interference between the contributions from dark matter couplings to up-type and down-type quarks. Mono-leptons can actually furnish the strongest current bound on dark matter interactions for axial-vector (spin-dependent) interactions and iso-spin violating couplings. Should a signal of dark matter production be observed, this process can also help disentangle the dark matter couplings to up- and down-type quarks.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Threshold photoproduction of η c and η b using holographic QCD

We discuss the possibility that threshold photoproduction of η c , b may be sensitive to the pseudovector 1 + − glueball exchange. We use the holographic construction to identify the pseudovector glueball with the Kalb-Ramond field, minimally coupled to bulk Dirac fermions. We derive the holographic C-odd form factor and its respective charge radius. Using the pertinent Witten diagrams, we derive and analyze the differential photoproduction cross section for η c , b in the threshold regime, including the interference from the dual bulk photon exchange with manifest vector dominance. The possibility of measuring this process at current and future electron facilities is discussed. Published by the American Physical Society 2024

Astronomy & Astrophysics↗

Mutual coupling effects in antenna arrays, volume 1

Mutual coupling between rectangular apertures in a finite antenna array, in an infinite ground plane, is analyzed using the vector potential approach. The method of moments is used to solve the equations that result from setting the tangential magnetic fields across each aperture equal. The approximation uses a set of vector potential model functions to solve for equivalent magnetic currents. A computer program was written to carry out this analysis and the resulting currents were used to determine the co- and cross-polarized far zone radiation patterns. Numerical results for various arrays using several modes in the approximation are presented. Results for one and two aperture arrays are compared against published data to check on the agreement of this model with previous work. Computer derived results are also compared against experimental results to test the accuracy of the model. These tests of the accuracy of the program showed that it yields valid data.

Collin, R. E.↗

Preparations for flight research to evaluate actuated forebody strakes on the F-18 high-alpha research vehicle

As part of the NASA High-Angle-of-Attack Technology Program (HATP), flight tests are currently being conducted with a multi-axis thrust vectoring system applied to the NASA F-18 High Alpha Research Vehicle (HARV). A follow-on series of flight tests with the NASA F-18 HARV will be focusing on the application of actuated forebody strake controls. These controls are designed to provide increased levels of yaw control at high angles of attack where conventional aerodynamic controls become ineffective. The series of flight tests are collectively referred to as the Actuated Nose Strakes for Enhanced Rolling (ANSER) Flight Experiment. The development of actuated forebody strake controls for the F-18 HARV is discussed and a summary of the ground tests conducted in support of the flight experiment is provided. A summary of the preparations for the flight tests is also provided.

Murri, Daniel G.↗

Modeling of the coupled magnetospheric and neutral wind dynamos

Work at SRI involved modeling the exchange of electromagnetic energy between the ionosphere and magnetosphere to help interpret the DE-B Poynting flux observations. To describe the electrical properties of the high-latitude ionosphere, we constructed a numerical model, from the framework provided by the Vector Spherical Harmonic (VSH) model, that determines the ionospheric currents, conductivities, and electric fields including both magnetospheric inputs and neutral wind dynamo effects. This model development grew from the earlier question of whether an electrical energy source in the ionosphere was capable of providing an upward Poynting flux. The model solves the steady-state neutral wind dynamo equations and the Poynting flux equation to provide insight into the electrodynamic role of the neutral winds. The modeling effort to determine the high-latitude energy flux has been able to reproduce many of the large-scale features observed in the Poynting flux measurements made by DE-2. Because the Poynting flux measurement is an integrated result of energy flux into or out of the ionosphere, we investigated the ionospheric properties that may contribute to the observed flux of energy measured by the spacecraft. During steady state the electromagnetic energy flux, or DC Poynting flux, is equal to the Joule heating rate and the mechanical energy transfer rate in the high-latitude ionosphere. Although the Joule heating rate acts as an energy sink, transforming electromagnetic energy into thermal or internal energy of the gas, the mechanical energy transfer rate may be either a sink or source of electromagnetic energy. In the steady state, it is only the mechanical energy transfer rate that can generate electromagnetic energy and result in a DC Poynating flux that is directed out of the ionosphere.

Thayer, J. P.↗

TOPEX/Poseidon orbit maintenance for the first five years

The TOPEX/Poseidon orbit maintenance strategy was changed following launch to include the effects of observed unmodeled, and hence anomalous, along-track accelerations. The anomalous force causes the semi-major axis, a, to either increase (called "boost") or decrease ("deboost" or "decay") depending on the satellite attitude and solar array pitch angle offset. Although this force is the most uncertain parameter in ground track prediction, it has been used as a passive technique for orbit maintenance, thereby reducing the number of propulsive maneuvers, enhancing maneuver spacing, and to place maneuvers at convenient times. This passive technique was first demonstrated in May 1993. The TOPEX/Poseidon orbit has been uniquely maintained using both passive (non-propulsive) and active (propulsive) maneuvers. Furthermore, the orbit has been maintained using only the passive technique since the ninth orbit maintenance maneuver on January 15, 1996. Only nine orbit maintenance maneuvers have been required to maintain the ground track, including verification site over flights, since achieving the operational orbit on September 21, 1992 (mission requirement: 95% within +/- l km). During this period, a has varied within 7,714,429 +/- 7 m, while the inclination i periodically fluctuated in the range 66.0408 deg. +/- 0.0040 deg. The frozen orbit (required e < 0.001 and omega approximately equals to 90 deg.) has been maintained without any dedicated eccentricity maneuvers. The frozen eccentricity vector has completed two periodic cycles and it is currently tracing its third cycle (period approximately equals 26.7 months).

Bhat, R. S.↗

BOREFIELD v. 1.0

Program BOREFIELD is an electromagnetic data modeling algorithm that calculates the frequency-domain electric vector E (with SI unit (V/m)/Hz) and magnetic vector H (in (A/m)/Hz) generated by an electric current source deployed within a fluid-filled, steel-cased (and possibly cemented) geologic borehole. The medium surrounding the borehole is assumed to be a homogeneous and isotropic electrically conducting wholespace. The source may involve axial, azimuthal, or radial current flow, localized at a point or along a finite-length line aligned with the borehole axis.

Aldridge, David F.↗

GPU Acceleration of History-Based Multigroup Monte Carlo

Accurate solutions of the radiation transport equation play an important role in the analysis of many nuclear systems. Because there is no need to discretize the problem, Monte Carlo methods offer the most accurate possible solutions to the transport equation. However, significant computational effort is required to reduce the stochastic noise inherent to Monte Carlo methods. Current trends in high performance computing are moving towards vectorized, single instruction multiple data (SIMD), architectures such as Intel Xeon Phis and graphics processing units (GPUs) due to their favorable ratio of performance to power consumption. The challenge of adapting Monte Carlo transport to vectorized computing architectures was first addressed by Brown with an algorithm known as event-based Monte Carlo. In this approach, rather than simulating individual particle histories from birth to death, groups of particles are processed one event at a time. This allows each event batch to perform the same operations in lockstep, enabling use of the vector hardware. Although modern vectorized hardware is more versatile than the early vector machines, reducing so-called thread divergence is nonetheless still an important consideration for algorithm design. Many of the algorithms proposed so far for Monte Carlo transport on advanced architectures have focused on variants of event-based transport. Some evidence, however, suggests that low-level thread divergence, resulting from short-lived branching statements, may not be detrimental to overall performance on GPUs as long as the effect on achievable memory bandwidth is considered. This paper characterizes the performance of a traditional history-based Monte Carlo algorithm on GPUs. We show that with only minor modifications to traditional algorithms, significant performance gains relative to CPUs are possible. (authors)

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Light-driven nanoscale vectorial currents

Controlled charge flows are fundamental to many areas of science and technology, serving as carriers of energy and information, as probes of material properties and dynamics and as a means of revealing or even inducing broken symmetries. Emerging methods for light-based current control offer particularly promising routes beyond the speed and adaptability limitations of conventional voltage-driven systems. However, optical generation and manipulation of currents at nanometre spatial scales remains a basic challenge and a crucial step towards scalable optoelectronic systems for microelectronics and information science. Here we introduce vectorial optoelectronic metasurfaces in which ultrafast light pulses induce local directional charge flows around symmetry-broken plasmonic nanostructures, with tunable responses and arbitrary patterning down to subdiffractive nanometre scales. Local symmetries and vectorial currents are revealed by polarization-dependent and wavelength-sensitive electrical readout and terahertz (THz) emission, whereas spatially tailored global currents are demonstrated in the direct generation of elusive broadband THz vector beams 17 . We show that, in graphene, a detailed interplay between electrodynamic, thermodynamic and hydrodynamic degrees of freedom gives rise to rapidly evolving nanoscale driving forces and charge flows under the extremely spatially and temporally localized excitation. These results set the stage for versatile patterning and optical control over nanoscale currents in materials diagnostics, THz spectroscopies, nanomagnetism and ultrafast information processing.

36 MATERIALS SCIENCE↗