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At least 451 records · Page 25

Elucidating mechanisms of Photosystem I assembly and repair (Final Technical Report)

Oxygenic photosynthesis generates the carbohydrates and oxygen that support life on earth. Central to this process are photosystems I and II (PSI and PSII), large protein-pigment complexes that are among the most complex macromolecular structures in nature. Impressive advances have been made in understanding the structure and photochemical mechanisms of PSI and PSII. However, less is known about the mechanisms underlying their biogenesis. The overarching goal of this project was to elucidate mechanisms of photosystem assembly. Several proteins that are not found in mature PSI or PSII are essential for their assembly, but the assembly pathways and the role of each assembly factor are just starting to emerge. During the course of this project, we advanced understanding of this problem in several ways. First, we addressed the spatial organization of photosystem assembly by localizing many known assembly factors to specific subdomains of thylakoid membranes in plant chloroplasts. This work revealed that the "curvature" domain - the highly curved periphery of stacked granal membrane disks - is a center of photosystem assembly. However, whereas some PSI assembly factors localized exclusively to the curvature domain, another was found exclusively in granal margins and unstacked membranes. This spatial partitioning suggests an assembly line along which different assembly intermediates are physically segregated. Most assembly factors localized similarly in dark-adapted and illuminated plants, but one PSII assembly factor shifted from the curvature domain to unstacked membranes upon illumination, suggesting an unanticipated role in the repair of light-induced PSII damage. Whereas most PSII subunits were found primarily in grana stacks (as expected), one PSII subunit, PsbP, was prominent also in the curvature fraction, suggesting that PsbP has functions beyond its role in mature PSII, possibly in biogenesis or repair.

59 BASIC BIOLOGICAL SCIENCES↗

Multiplexing and Demultiplexing Signals for Radiography Application Using the Discrete Fourier Transform

Our goal is to develop an X-ray phase-contrast imaging system that can provide excellent soft tissue contrast of phase, attenuation, and small-angle scatter. We propose to replace the common system of G0, G1, and G2 gradings with a biprism array to replace the G1 grading and introduce a novel X-ray tube designed to replace the motion of the phase stepping grading G2. The proposed X-ray tube uses temporal multiplexing to provide simultaneous virtual “electronic phase stepping.” In this work the discrete Fourier transform is used to separate from the composite measurement individual X-ray phase contrast measurements sampled at different frequencies. The method performs a discrete Fourier transform of a composite refence sequence to obtain using the frequency amplitudes calibration factors needed to extract the X-ray phase contrast measurement amplitudes from the composite image. The composite reference sequence is the sum of the individual sequences, at different frequencies, with amplitudes of one. The method takes the discrete Fourier transform of this composite reference sequence; whereby, the amplitude of each frequency component is compared with the total sum of its stand-alone sequence amplitude. A calibration factor is determined so that the amplitude of this composite reference frequency times the calibration factor must equal the total sum of the sequence amplitude—the zero-frequency amplitude of the discrete Fourier transform of its stand-alone sequence. To demultiplex the composite measured signal these calibration factors are multiplied by the amplitudes of the frequency components of the discrete Fourier transform of the composite X-phase-contrast measurement to obtain the amplitude of each frequency encoded measurement. Using these calibration factors, we demonstrate with the discrete Fourier transform in Mathematica the extraction of individual images from a composite image that one would expect obtaining from our proposed new X-ray phase contrast imaging system. We then demonstrate as an example how using images from X-ray phase contrast data one can calculate phase, attenuation and the dark field images using grading phase step data supplied to use from Microworks, GmbH in Karlsruhe, Germany.

42 ENGINEERING↗

Estimating Total Methane Emissions from the Denver-Julesburg Basin Using Bottom-Up Approaches

Methane is a powerful greenhouse gas with a 25 times higher 100-year warming potential than carbon dioxide and is a target for mitigation to achieve climate goals. To control and curb methane emissions, estimates are required from the sources and sectors which are typically generated using bottom-up methods. However, recent studies have shown that national and international bottom-up approaches can significantly underestimate emissions. In this study, we present three bottom-up approaches used to estimate methane emissions from all emission sectors in the Denver-Julesburg basin, CO, USA. Our data show emissions generated from all three methods are lower than historic measurements. A Tier 1/2 approach using IPCC emission factors estimated 2022 methane emissions of 358 Gg (0.8% of produced methane lost by the energy sector), while a Tier 3 EPA-based approach estimated emissions of 269 Gg (0.2%). Using emission factors informed by contemporary and region-specific measurement studies, emissions of 212 Gg (0.2%) were calculated. The largest difference in emissions estimates were a result of using the Mechanistic Air Emissions Simulator (MAES) for the production and transport of oil and gas in the DJ basin. The MAES accounts for changes to regulatory practice in the DJ basin, which include comprehensive requirements for compressors, pneumatics, equipment leaks, and fugitive emissions, which were implemented to reduce emissions starting in 2014. The measurement revealed that normalized gas loss is predicted to have been reduced by a factor of 20 when compared to 10-year-old normalization loss measurements and a factor of 10 less than a nearby oil and production area (Delaware basin, TX); however, we suggest that more measurements should be made to ensure that the long-tail emission distribution has been captured by the modeling. This study suggests that regulations implemented by the Colorado Department of Public Health and Environment could have reduced emissions by a factor of 20, but contemporary regional measurements should be made to ensure these bottom-up calculations are realistic.

03 NATURAL GAS↗

User Acceptance of Shared Autonomous Vehicles

A dissertation is proposed to explore user acceptance of shared autonomous vehicles (SAVs). SAVs are facing limited user acceptance. To systematically tackle the user acceptance barriers of SAVs, the main problem can be disintegrated into two sub-problems of user acceptance of autonomous vehicles (AVs) and ridesharing. The comfort of the ride experience in AVs is a determinant of user acceptance. Understanding the influential factors and developing methodologies to quantify human comfort in AVs are essential to facilitating future research to improve human comfort in AVs. The current pooled rideshare (PR) service closely resembles the anticipated future of SAVs. Understanding why users prefer or refuse to use PR at the current stage prepares SAVs for broader acceptance in the future. Until now, a series of peer-reviewed publications have been published to achieve the technical goals. Two simulator-based user studies were conducted to instrument the research on human comfort in AVs. Statistical analysis was performed to identify the crucial vehicular behavioral factors of human comfort in AVs. The influential factors of human comfort in AVs and methodologies to quantify and detect human comfort in AVs were investigated. Two survey-based studies were deployed to facilitate the investigation of user acceptance of rideshare services. The influential factors of users' willingness to consider PR were explored and identified, and the choice behaviors in ridesharing services were comprehensively modeled and analyzed. The proposed research answers a series of fundamental questions regarding the user acceptance of SAVs. For the branch of user acceptance of AVs, the research generated guidelines for improving passenger comfort in AVs by identifying a series of autonomous driving factors of passenger comfort. The research also provides fundamental tools to estimate human comfort levels for future research and in-AV applications. For the branch of user acceptance of PR, the research provided user acceptance-aware vehicle, service, and policy design insights that can promote the usage of PR.

Su, Haotian↗

Performance evaluation of finned tube heat exchanger using curved wavy delta winglet vortex generators with circular perforations

Vortex generation is recognized as an effective passive approach to improve the heat transfer rate in fin and tube heat exchangers (FTHEs). The current study proposed innovative designs of curved wavy delta winglet vortex generators (CWDWVGs), both without and with circular perforations, to improve the heat transfer efficiency of FTHEs. There is potential to increase heat transfer performance further through various CWDWVG designs. Here, this study explores seven unique CWDWVG configurations, from 1-wave to 7-wave. A 3-D computational numerical model is utilized to evaluate the Thermo-hydraulic performance of FTHEs fitted with these different CWDWVG configurations across Reynolds numbers from 400 to 2000. This comparative analysis of the Thermo-hydraulic performance of FTHEs featuring four parallel circular tube layouts assesses configurations both with and without vortex generators (VGs) and various hole configurations. The evaluation of Thermo-hydraulic performance involves different parameters, including the London area goodness factor (LAGF), Colburn factor (j), friction factor (f), pressure drop (?P), and Nusselt number (Nu). Results demonstrate that the various CWDWVG configurations and the number of holes in them substantially affect the efficiency, as evaluated by the dimensionless Performance Evaluation Criteria (PEC). Notably, the 7-wave CWDWVGs surpassed other configurations, and integrating circular punched perforations further improved the thermal-hydraulic performance of FTHE. Specifically, the 7-wave CWDWVGs without holes demonstrated superior performance over other configurations, showing a significant increase in Nusselt number by 75.18% and 85.16% at Reynolds numbers of 2000 and 400, respectively, alongside an increase in pressure drop by 216.38% to 224.96%. Meanwhile, the 7-wave CWDWVGs with eight holes, in comparison to those without holes, exhibited a Nusselt number increase of 0.85%, a pressure drop decrease of 7.31%, and a reduction in the friction factor by 5.82%.

32 ENERGY CONSERVATION, CONSUMPTION, AND UTILIZATI↗

Geospatial analysis of preterm and small-for-gestational age births in Washington D.C.

Background: This study is based on the recognition that adverse pregnancy outcomes significantly affect maternal and infant health, leading to increased morbidity and mortality. These outcomes are shaped by a complex interplay of individual-level factors—like maternal age and education—and community-level influences, including socio-economic status and access to healthcare. Understanding these determinants is crucial for developing effective public health strategies, especially for marginalized populations, by identifying high-risk areas and informing targeted interventions that address both individual and structural barriers. Methods: We utilized geospatial analysis to explore the association between individual- and community-level factors and adverse pregnancy outcomes, specifically preterm birth (PTB) and small-for-gestational-age (SGA) birthweight in Washington, D.C. We used Empirical Bayes smoothing methods to calculate rates of adverse birth outcomes from 2010 to 2018 at the U.S. Census tract–level. Spatial scan statistics were used to investigate if adverse birth outcomes clustered in specific areas. ANOVA tests were conducted for individual- and community-level factors within identified clusters. Results: Spatial analysis identified significant high-risk clusters for PTB and SGA infants primarily in southeastern Washington, D.C., particularly in Wards 7 and 8. Individuals residing within these clusters experienced a 47% increased risk of PTB (RR = 1.467) and a 56% increased risk of SGA (RR = 1.560) compared to those outside clusters. Space–time analysis revealed temporal variation, with PTB clusters persisting from 2011 to 2014 and SGA clusters extending through 2017. Compared to low-risk clusters, high-risk clusters had younger birthing individuals (mean age ~26.5 vs. ~33 years), lower maternal college degree attainment (~20% vs. ~80%), higher rates of late or no prenatal care (~16% vs. 11%), and increased prevalence of smoking and hypertension (all P < 0.001). Community-level indicators showed lower median household incomes ($\$40,000$ vs. ~$\$105,000$), greater poverty (~16% vs. ~7% below $\$10,000$/year), higher public assistance use (~32% vs. ~5%), and reduced healthcare access (greater distances to emergency and specialty care) in high-risk areas (all P < 0.001). Neighborhood deprivation indices were significantly elevated, commutes were longer, and population density was lower in these clusters. These findings highlight that adverse birth outcomes cluster in neighborhoods with pronounced socioeconomic and health disparities. Conclusion: High-risk birth clusters highlight intertwined factors: individual, socio-economic, and geographic. Addressing these requires comprehensive interventions focusing on social and structural determinants of health.

Birth outcomes↗

Size resolved particle hygroscopcity for 30, 60, and 90 nm particles collected at the EPCAPE Mount Soledad site from 04/20/2023 to 06/15/2023

Contains both the growth factor probability density function (probability is out of 200) and the average growth factors calculated by the Gysel inversion. The instrument measured three different diameters 30 nm, 60nm and 90nm each diameter was selected for an hour. During that hour, five 12-minute scans were taken scanning growth factors from 0.5-3.0. RH was consistently kept at 85%. Calibrations of the instrument with NaCl were performed on 4/26/2023 from 11:20 to 14:20, on 5/16/2023 from 11:40 to 16:00, and on 5/30/2023 from 10:20 to 14:20. Calibrations with (NH4)2SO4 were performed on 5/8/2023 from 11:45 to 14:40, on 5/23/2023 from 11:20 to 3:00, and on 6/14/2023 from 13:00 to 16:00. Time is recorded in seconds since 1/1/1904.

30 nm particle hygroscopicity↗

Effects of dissolved cations, dissolved organic carbon, and exposure concentrations on per- and polyfluoroalkyl substances bioaccumulation in freshwater algae

Per- and polyfluoroalkyl substances (PFAS) have attracted global attention because of their persistence, toxicity, bioaccumulation potential, and associated adverse effects. As important primary producers, freshwater algae constitute the base of the food web in freshwater aquatic ecosystems. However, the effects of key environmental factors on PFAS uptake and bioaccumulation in freshwater algae have not been thoroughly studied. In this study, three bioaccumulation experiments were conducted to evaluate the influence of dissolved cations, dissolved organic carbon, and exposure concentrations on PFAS bioaccumulation in algae. Among the 14 studied PFAS, seven long-chain PFAS tended to bioaccumulate in algae. Elevated divalent cations (Ca 2+ and Mg 2+ ) and dissolved organic carbon did not significantly change the algal bioconcentration factors (BCFs) of PFAS, suggesting complexity of the interactions among PFAS, environmental factors, and biotic activities. Additionally, increasing exposure concentrations (0.5, 1, 5, and 10 μg/L of each PFAS) increased PFAS concentrations in algae but decreased the BCF values. This indicated that attention should be paid to the application of BCFs in future studies, including ecological risk assessment. Moreover, fluorotelomer sulfonic acids (FTSs) were incompletely recovered, suggesting that biotransformation occurred. Further studies should be conducted to evaluate whether algae play a role in FTSs biotransformation and to determine the mechanisms. In conclusion, studying the impacts of key environmental factors on PFAS bioaccumulation in algae is crucial for understanding the bioaccumulation processes that occur at the lowest trophic level and that eventually affect the dynamics of entire aquatic ecosystems.

63 RADIATION, THERMAL, AND OTHER ENVIRON. POLLUTAN↗

Numerical calculation of Coulomb corrections in forward elastic 𝑝↑⁢𝑝 and 𝑝↑⁢𝐴 scattering

The analysis of RHIC hydrogen gas jet target polarimeter measurements of transverse analyzing powers 𝐴 N ⁡(𝑡) in proton-nucleus scattering requires accurate Coulomb corrections to both spin-flip and nonflip amplitudes. These corrections must cover a wide range of nuclear charges 𝑍 and form factor slopes, with flexibility to vary form factors during data fitting. To avoid technically challenging calculations involving a small but finite fictitious photon mass, the Coulomb correction to the nonflip electromagnetic amplitude with an exponential form factor was related to the corresponding correction for the spin-flip amplitude. This approach allows soft photon contributions to all amplitudes, including those with nonexponential form factors, to be calculated in the massless photon limit using only analytical expressions and numerically stable integrals with nonsingular integrands and finite integration limits. In addition, an absorptive correction to the spin-flip electromagnetic amplitude, which plays a critical role in spin effects in forward polarized proton-nucleus scattering, was accurately evaluated.

43 PARTICLE ACCELERATORS↗

A novel regulator of the fungal phosphate starvation response revealed by transcriptional profiling and DNA affinity purification sequencing

Cells must accurately sense and respond to nutrients to compete for resources and establish growth. Phosphate is a critical nutrient source necessary for signaling, energy metabolism, and synthesis of nucleic acids, phospholipids, and cellular metabolites. During phosphate limitation, fungi import phosphate from the environment and liberate phosphate from phosphate-containing molecules in the cell. In the model filamentous fungus Neurospora crassa, the phosphate starvation response is regulated by the conserved transcription factor NUC-1. The activity of NUC-1 is repressed by a complex of the cyclin-dependent kinase MDK-1 and the cyclin PREG when phosphate is plentiful. When phosphate is limiting, NUC-1 repression by MDK-1/PREG is relieved by the cyclin-dependent kinase inhibitor NUC-2. We investigated the global response of N. crassa to phosphate starvation. During phosphate starvation, NUC-1 directly activated the expression of genes encoding phosphatases, nucleases, and a phosphate transporter and directly repressed genes associated with the ribosome. Additionally, NUC-1 indirectly activated the expression of an uncharacterized transcription factor, which we named nuc-3. NUC-3 directly repressed the expression of genes involved in phosphate acquisition and liberation after an extended period of phosphate starvation. Additionally, NUC-3 directly repressed the expression of the cyclin-dependent kinase inhibitor nuc-2. Thus, through the combination of NUC-3 direct repression of genes in the phosphate starvation response and nuc-2, an activator of the phosphate starvation response, NUC-3 serves to act as a brake on the phosphate starvation response after an extended period of phosphate starvation. This braking mechanism could reduce transcription, a phosphate-intensive process, under conditions of extended phosphate limitation.IMPORTANCEFungi have evolved regulatory networks to respond to available nutrients. Phosphate is often a limiting nutrient for fungi that is critical for many cellular functions, including nucleic acid and phospholipid biosynthesis, cell signaling, and energy metabolism. The fungal response to phosphate limitation is important in interactions with plants and animals. We investigated the global transcriptional response to phosphate starvation and the role of a major transcriptional regulator, NUC-1, in the model filamentous fungus Neurospora crassa. Our data show that NUC-1 is a bifunctional transcription factor that directly activates phosphate acquisition genes, while directly repressing genes associated with phosphate-intensive processes. NUC-1 indirectly regulates an uncharacterized transcription factor, which we named nuc-3. NUC-3 directly represses phosphate acquisition genes and nuc-2, an activator of the phosphate starvation response, during extended periods of phosphate starvation. Thus, NUC-3 acts as a brake on the phosphate starvation response to reduce phosphate-intensive activities, like transcriptional activation, when phosphate starvation persists.

DNA affinity purification sequencing↗

SOX2-driven enhancer landscape defines the transcriptional architecture of retinogenesis

Retinal neurogenesis is mediated by the coordinated activities of a complex gene regulatory network (GRN) of transcription factors (TFs) in multipotent retinal progenitor cells (RPCs). How this GRN mechanistically guides neural competence remains poorly understood. In this study, we present integrated transcriptional, genetic and genomic analyses to uncover the regulatory mechanisms of SOX2, a key factor in establishing neural identity in RPCs. We show that SOX2 is preferentially enriched in the RPC-specific enhancer landscape associated with essential regulators of retinogenesis. Disruption of SOX2 expression impairs retinogenesis, marked by a selective loss of enhancer activity near genes essential for RPC proliferation and lineage specification. We identified the RPC transcription factor VSX2 as a binding partner for SOX2 and, together, SOX2 and VSX2 co-target a core, retina-specific chromatin repertoire characterized by enhanced TF binding and robust chromatin accessibility. This cooperative binding establishes a shared SOX2-VSX2 transcriptional code that promotes the expression of crucial regulators of neurogenesis while repressing the acquisition of alternative lineage cell fate. Our data illuminate fundamental biological insights on how transcription factors act in concert to drive chromatin-based genetic programs underlying retinal neural identity.

Chromatin↗

Impact of Grazing Duration and Environment on Soil Carbon in Reclaimed Uranium Mines Tailings: A Region Specific Study

ABSTRACT Grassland ecosystems, which cover over one‐third of the Earth's land area, store 10%–30% of global soil carbon (C). However, these ecosystems face substantial impacts from human activities, including mining. This study investigates the spatial distribution of soil C and related environmental factors in reclaimed grasslands on former uranium mine sites in Wyoming. We hypothesized that grazing duration and environmental factors would influence soil C levels. Interactions between topography, vegetation diversity, soil properties, and soil C in the context of grazing management in both natural and reclaimed grasslands from a wide range of periods from 1 year to 100 years were analyzed using geographically weighted regression models. Data collected from 2022 to 2023 showed that total carbon was consistently higher in natural grasslands (1.2%–4.9%) than in reclaimed grasslands (0.8%–1.3%). Additionally, soil C was significantly higher in natural grasslands grazed for 1 year compared to those grazed for 100 years. In contrast, reclaimed grasslands had lower soil C in areas grazed for 1 year compared to those grazed for 7 or 14 years. The absolute values of coefficients from environmental covariates indicated that areas grazed for a shorter duration (~1 year) were more influenced by biotic and abiotic factors than areas grazed for longer periods (> 7 years). Our findings show moderate grazing increases the resiliency of grassland ecosystems when grazed 7 years or longer and acknowledge the roles of topographic, soil, and vegetative factors in enhancing soil C concentration and developing sustainable land management practices in rangeland conditions.

Shilpakar, Chandan [Department of Plant Sciences U↗

Mechanical structure of the nucleon and the baryon octet: twist-2 case

We investigate the gravitational form factors (GFFs) of the nucleon and the baryon octet, decomposed into their flavor components, utilizing a pion mean-field approach grounded in the large N c limit of Quantum Chromodynamics (QCD). Our focus is on the contributions from the twist-2 operators to the flavor-triplet and octet GFFs, and we decompose the mass, angular momentum, and D-term form factors of the nucleon into their respective flavors. The strange quark contributions are found to be relatively mild for the mass and angular momentum form factors, while providing significant corrections to the D-term form factor. In the course of examining the flavor decomposition of the GFFs, we uncover that the effects of twist-4 operators play a crucial role. While the gluonic contributions are suppressed by the packing fraction of the instanton vacuum in the twist-2 case, contributions from twist-4 operators are of order unity, necessitating its explicit consideration.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Relative permeabilities for two-phase flow through wellbore cement fractures

Multiple fluids are likely to exist in fractures and flow paths associated with leaky wellbores, including liquids (e.g., crude oil) and gases (e.g., gas exsolved from liquid). These fluids occupy and move through different portions of the pore spaces within the fractures depending on many factors, including fluid properties, fracture size, and the amount of the different fluids. Upward leakage of any phase, through the fracture, can contaminate water-bearing formations, create hazardous surface conditions, and compromise the functionality of the wellbore. Early signs of wellbore leaks may be expressed by anomalous pressure behavior at surface monitoring points on cavern storage wells. These pressure anomalies are difficult to interpret, necessitating knowledge of the factors that affect the multiphase flow in fractures and porous media. These parameters are critical to modeling multiphase flow in fractures. This insight can guide further diagnosis and maximize leak remediation. Here, our study focuses on the relationship of the liquid–gas relative permeabilities for representative variable-aperture wellbore cement fracture. To obtain the relative permeability of each phase, two-phase flow tests were conducted where both fluids were flowing simultaneously through a fractured wellbore cement specimen under a range of factors, namely (1) aperture size, (2) capillary numbers, and (3) viscosity ratio. The flow experiments were conducted under a range of confining stresses and flow velocities, using nitrogen gas and silicone oils (of different viscosities) in a specially designed pressure vessel. The sum of gas and oil relative permeabilities were found to be less than one under all conditions, which indicates that the presence of one phase affects the permeability of the other phase, and vice versa. Since the gas phase flow conditions include a significant inertial flow component in addition to viscous flow, the inertial flow coefficients at different saturation states are presented. The factors affecting the relationship between the relative permeabilities are discussed in detail. A new mathematical model for estimating the relative permeability of wellbore cement fracture is presented and experimentally validated.

58 GEOSCIENCES↗

Investigating the weak charge of 48 Ca using a dispersive optical model

A new nonlocal dispersive-optical-model analysis has been carried out for neutrons and protons in 48 Ca that reproduces the weak-form-factor measurement of CREX. In addition to elastic-scattering angular distributions, total and reaction cross sections, single-particle energies, the neutron and proton numbers, and the charge distribution, the CREX-measured weak form factor has been fit to extract the neutron and proton self-energies both above and below the Fermi energy. The resulting single-particle propagators yield a weak form factor of F w = 0.125 ± 0.05 and a neutron skin of R skin = 0.152 ± 0.05 fm, in good agreement with CREX. The rearrangement of the neutron distribution to accommodate such a thin neutron skin results in the high-momentum content of the neutrons exceeding that of the protons, in contrast to what is expected from high-energy two-nucleon knockout measurements by the CLAS collaboration and ab initio asymmetric matter calculations. The present analysis also emphasizes the importance of neutron experimental data in constraining weak charge observables necessary for a precise description of neutron densities. Notably, the neutron reaction cross section and further parity-violating experiments weak form factor measurements are essential to generate a unique way to determine the 48 Ca neutron distribution in this framework.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Permeability and Induced Polarization of Mudstones

Electrical measurements can be used to estimate hydraulic properties such as permeability ( k ) in sedimentary rocks. Previous work has focused on sandstones, siltstones, and carbonates, while investigations on mudstones have rarely been reported. In this study, we report on electrical geophysical measurements for 23 mudstone samples using an experimental approach designed to reliably saturate these low permeability mudstones. The modified Hagen-Poiseuille model linking permeability to the formation factor ( F ) and an effective pore radius ( r ) provides an excellent fit to the data set with a near-constant pore radius, indicating that the effective porosity (1/ F ) is the controlling factor on k . In these samples, the surface area normalized to pore volume ( S por ), frequently used in permeability estimation models, varies by 1–2 orders of magnitude and is thus not a reliable proxy of the inverse effective hydraulic radius. The formation factor also exerts the primary control on induced polarization (IP) parameters, whereas Spor shows no relation to the IP parameters. A strong linear relationship is found between IP parameters (imaginary conductivity and normalized chargeability) and surface conductivity, although the proportionality factor is significantly lower than those observed in more permeable rocks and sediments. Apparent relationships between the polarization strength-derived and time constant-derived geophysical length scales and the effective hydraulic radius appear to be driven by variations in the electrochemical parameters (i.e., specific polarizability and diffusion coefficient). Overall, these findings emphasize that predicting hydraulic properties from electrical measurements in fine-grained rocks remains challenging and requires further investigation into the electrochemical properties involved.

58 GEOSCIENCES↗

The Remarkable 2024 North Atlantic Mid‐Season Hurricane Lull

Abstract The 2024 North Atlantic (hereafter Atlantic) hurricane season started quickly, with the earliest Category 5 on record (Beryl) and three hurricanes forming through 14 August. Following Ernesto's dissipation on 20 August, the Atlantic hurricane season became extremely quiet during the climatological peak of hurricane season, with only one Category 2 hurricane (Francine) and one tropical storm through 23 September. Several environmental factors likely contributed to this unexpected, prolonged lull. During mid‐to‐late August, subseasonal conditions were broadly favorable for Atlantic hurricanes, but a northward shift in African easterly wave emergence latitude yielded fewer tropical cyclone seed disturbances that also traversed unfavorably cool ocean water. During early‐to‐mid September, subseasonal variability driven by the Madden‐Julian oscillation was less conducive to hurricane activity, with several bouts of increased vertical wind shear across the central Atlantic. Throughout most of the lull, the tropical Atlantic was anomalously dry and subsident, suppressing hurricane formation chances. Plain Language Summary The 2024 North Atlantic (hereafter Atlantic) hurricane season was anticipated to be extremely active, with seasonal forecasts calling for a potentially historic season. Following a busy start including the earliest Category 5 Atlantic hurricane on record (Beryl), the season became very quiet between 20 August–23 September, with only one Category 2 hurricane (Francine) and one tropical storm forming. Following the lull, the Atlantic became extremely busy again, with seven hurricanes forming from 25 September through the end of the season–the most on record for this period. This paper focuses on the surprising lull and attributes it to several different factors, including a late‐August northward shift in African easterly wave tracks (organized thunderstorm complexes spanning thousands of kilometers that often serve as Atlantic hurricane seeds). This northward shift brought these systems out over colder water and into a drier airmass, suppressing their hurricane formation chances. During the first 3 weeks of September, a large‐scale tropical phenomenon known as the Madden‐Julian oscillation, resulted in increased sinking motion, drier mid‐levels and increased vertical wind shear–all of which typically reduce Atlantic hurricane activity. Overall, the lull demonstrates how seed disturbances and other environmental factors can strongly modulate aggregate seasonal tropical cyclone activity. Key Points Following an active start, the 2024 Atlantic hurricane was quiet during the climatological peak with only 1 tropical storm and 1 hurricane The lull was not anticipated by seasonal forecasting agencies, which called for an extremely active 2024 Atlantic hurricane season Factors reducing storm count included a northward shift in African easterly waves, broad‐scale subsidence, and reduced mid‐level moisture

Klotzbach, P J↗

Molecular model of TFIIH recruitment to the transcription-coupled repair machinery

Transcription-coupled repair (TCR) is a vital nucleotide excision repair sub-pathway that removes DNA lesions from actively transcribed DNA strands. Binding of CSB to lesion-stalled RNA Polymerase II (Pol II) initiates TCR by triggering the recruitment of downstream repair factors. Yet it remains unknown how transcription factor IIH (TFIIH) is recruited to the intact TCR complex. Combining existing structural data with AlphaFold predictions, we build an integrative model of the initial TFIIH-bound TCR complex. We show how TFIIH can be first recruited in an open repair-inhibited conformation, which requires subsequent CAK module removal and conformational closure to process damaged DNA. In our model, CSB, CSA, UVSSA, elongation factor 1 (ELOF1), and specific Pol II and UVSSA-bound ubiquitin moieties come together to provide interaction interfaces needed for TFIIH recruitment. STK19 acts as a linchpin of the assembly, orienting the incoming TFIIH and bridging Pol II to core TCR factors and DNA. Molecular simulations of the TCR-associated CRL4CSA ubiquitin ligase complex unveil the interplay of segmental DDB1 flexibility, continuous Cullin4A flexibility, and the key role of ELOF1 for Pol II ubiquitination that enables TCR. Collectively, these findings elucidate the coordinated assembly of repair proteins in early TCR.

Paul, Tanmoy↗