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At least 451 records · Page 25

All sources NASA NTRS DOE OSTI

DOE OSTI2025

Leaky ribosomal scanning enables tunable translation of bicistronic ORFs in green algae

Advances in sequencing technology have unveiled examples of nucleus-encoded polycistrons, once considered rare. Exclusively polycistronic transcripts are prevalent in green algae, although the mechanism by which multiple polypeptides are translated from a single transcript is unknown. Here, we used bioinformatic and in vivo mutational analyses to evaluate competing mechanistic models for translation of bicistronic mRNAs in green algae. High-confidence manually curated datasets of bicistronic loci from two divergent green algae, Chlamydomonas reinhardtii and Auxenochlorella protothecoides, revealed a preference for weak Kozak-like sequences for ORF 1 and an underrepresentation of potential initiation codons before the ORF 2 start codon, which are suitable conditions for leaky ribosome scanning to allow ORF 2 translation. We used mutational analysis in A. protothecoides to test the mechanism. In vivo manipulation of the ORF 1 Kozak-like sequence and start codon altered reporter expression at ORF 2, with a weaker Kozak-like sequence enhancing expression and a stronger one diminishing it. A synthetic bicistronic dual reporter demonstrated inversely adjustable activity of green fluorescent protein expressed from ORF 1 and luciferase from ORF 2, depending on the strength of the ORF 1 Kozak-like sequence. Our findings demonstrate that translation of multiple ORFs in green algal bicistronic transcripts is consistent with episodic leaky scanning of ORF 1 to allow translation at ORF 2. This work has implications for the potential functionality of upstream open reading frames (uORFs) found across eukaryotic genomes and for transgene expression in synthetic biology applications.

59 BASIC BIOLOGICAL SCIENCES↗

NASA NTRS2024

Asheville Urban Development II: Mapping Urban Heat to Support Cooling Initiatives and Climate Resilience Planning in the Greater Asheville Area

Asheville, North Carolina experiences the urban heat island effect, where temperatures in the city are higher than in surrounding rural areas. This effect intensifies with increased urbanization and less vegetative cover. Asheville’s urban heat island was exacerbated by population increases and tree cover decline, escalating the need for heat mitigation. We partnered with the City of Asheville’s Sustainability Department and Asheville GreenWorks whose actions prioritize sustainable city planning and equitable climate resilience. Using NASA Earth observations and ancillary datasets we spatially mapped urban heat, heat vulnerability, and cooling and adaptive capacity from 2019-2023. To map urban heat, we used Landsat 8 and 9 Operational Land Imager and Thermal Infrared Sensor for land surface temperature and albedo data and the ECOsystem Spaceborne Thermal Radiometer Experiment on Space Station for evapotranspiration data. We assessed heat vulnerability using the urban heat data andthe Centers for Disease Control and Prevention’s Social Vulnerability Index. To evaluate cooling and adaptive capacity we used the InVEST Urban Cooling Model, integrating our heat vulnerability analysis with land use and cover data from Sentinel-1 Synthetic Aperture Rada rand Sentinel-2 Multispectral Instrument. Our results revealed distinct spatial patterns of urban heat, heat vulnerability, and cooling and adaptive capacity in Asheville with downtown as the focal hotspot and an outward decreasing radial pattern. These findings highlight targeted need for interventions to reduce heat impacts, address environmental injustices, and enhance climate resilience. Our project provided research to local organizations that can be used for heat mitigation in the greater Asheville area.

Authors not in NED but are confirmed contractors. ↗

NASA NTRSDate not supplied

The Porous Microstructure Analysis (PuMA) software

The open-source Porous Microstructure Analysis (PuMA) software was implemented to offer an efficient framework for determining material characteristics from 3D microstructures. Its development was inspired by progress in X-ray microtomography, an imaging technology that captures the internal structure of materials in 3D, and even in a 4D temporal context. Over recent years, this method has transformed the domain of materials science due to its capability to non-destructively examine material microstructures while presenting digital data about their geometrical details. It has provided insights into materials relevant to several NASA missions, including heatshields, parachute fabrics, meteorites, and other advanced composites. PuMA, in its current version 3, delivers an array of features, spanning from basic geometric insights of a microstructure to intricate anisotropic thermo-elastic and chemical behavior. Specifically, the software evaluates morphological attributes (specific surface area, volume fractions, mean intercept lengths, orientation) and physical characteristics (conductivity, elasticity, permeability, and tortuosity). Additionally, it can model material degradation processes, such as oxidation and surface chemistry interactions. The software can generate synthetic microstructures, from straightforward geometrical designs to intricate woven and non-woven geometries. Coupling material generation and characterization enable parametric studies and sensitivity analysis to optimize the microstructural performance and inform design decisions and reliability assessment based on uncertainty quantification. A recent addition to PuMA includes the TomoSAM plugin, devised to incorporate the cutting-edge Segment Anything Model (SAM). SAM is a promptable deep learning model that can identify objects and create image masks in a zero-shot manner, based only on a few user clicks. The synergy between these tools aids in the segmentation of complex 3D datasets from tomography or other imaging techniques, which would otherwise require a laborious manual segmentation process.

Tomography↗

DOE OSTI2025

Airborne imaging spectroscopy surveys of Arctic and boreal Alaska and northwestern Canada 2017–2023

Since 2015, NASA’s Arctic Boreal Vulnerability Experiment (ABoVE) has investigated how climate change impacts the vulnerability and/or resilience of the permafrost-affected ecosystems of Alaska and northwestern Canada. ABoVE conducted extensive surveys with the Next Generation Airborne Visible/Infrared Imaging Spectrometer (AVIRIS-NG) during 2017, 2018, 2019, and 2022 and with AVIRIS-3 in 2023 to characterize tundra, taiga, peatlands, and wetlands in unprecedented detail. The ABoVE AVIRIS dataset comprises ~1700 individual flight lines covering ~120,000 km 2 with nominal 5 m × 5 m spatial resolution. Data include individual transects to capture important gradients like the tundra-taiga ecotone and maps of up to 10,000 km 2 for key study areas like the Mackenzie Delta. The ABoVE AVIRIS surveys enable diverse ecosystem science, provide crucial benchmark data for validating retrievals from the PACE, PRISMA, and EnMAP satellite sensors and help prepare for the SBG and CHIME missions. This paper guides interested researchers to fully explore the ABoVE AVIRIS spectral imagery and complements our guide to the ABoVE airborne synthetic aperture radar surveys.

Miller, Charles E. [California Institute of Techno↗

DOE OSTI2020

An Accurate Vegetation and Non-Vegetation Differentiation Approach Based on Land Cover Classification

Accurate vegetation detection is important for many applications, such as crop yield estimation, land cover land use monitoring, urban growth monitoring, drought monitoring, etc. Popular conventional approaches to vegetation detection incorporate the normalized difference vegetation index (NDVI), which uses the red and near infrared (NIR) bands, and enhanced vegetation index (EVI), which uses red, NIR, and the blue bands. Although NDVI and EVI are efficient, their accuracies still have room for further improvement. In this paper, we propose a new approach to vegetation detection based on land cover classification. That is, we first perform an accurate classification of 15 or more land cover types. The land covers such as grass, shrub, and trees are then grouped into vegetation and other land cover types such as roads, buildings, etc. are grouped into non-vegetation. Similar to NDVI and EVI, only RGB and NIR bands are needed in our proposed approach. If Laser imaging, Detection, and Ranging (LiDAR) data are available, our approach can also incorporate LiDAR in the detection process. Results using a well-known dataset demonstrated that the proposed approach is feasible and achieves more accurate vegetation detection than both NDVI and EVI. In particular, a Support Vector Machine (SVM) approach performed 6% better than NDVI and 50% better than EVI in terms of overall accuracy (OA).

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2020

Nanofabrication of synthetic nanoporous geomaterials: from nanoscale-resolution 3D imaging to nano-3D-printed digital (shale) rock

Abstract Advances in imaging have made it possible to view nanometer and sub-nanometer structures that are either synthesized or that occur naturally. It is believed that fluid dynamic and thermodynamic behavior differ significantly at these scales from the bulk. From a materials perspective, it is important to be able to create complex structures at the nanometer scale, reproducibly, so that the fluid behavior may be studied. New advances in nanoscale-resolution 3D-printing offer opportunities to achieve this goal. In particular, additive manufacturing with two-photon polymerization allows creation of intricate structures. Using this technology, a creation of the first nano-3D-printed digital (shale) rock is reported. In this paper, focused ion beam-scanning electron microscopy (FIB-SEM) nano-tomography image dataset was used to reconstruct a high-resolution digital rock 3D model of a Marcellus Shale rock sample. Porosity of this 3D model has been characterized and its connected/effective pore system has been extracted and nano-3D-printed. The workflow of creating this novel nano-3D-printed digital rock 3D model is described in this paper.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

DOE OSTI2021

Pushing the Limits of High-speed X-ray Tomography to See the Unknown

First-of-their kind datasets from a high-speed X-ray tomography system were collected, and a novel numerical effort utilizing temporal information to reduce measurement uncertainty was shown. The experimental campaign used three high-speed X-ray imaging systems to collect data at 100 kHz of a scene containing high-velocity objects. The scene was a group of known objects propelled by a 12-gauge shotgun shell reaching speeds of hundreds of meters per second. These data represent a known volume where the individual components are known, with experimental uncertainties that can be used for reconstruction algorithm validation. The numerical effort used synthetic volumes in MATLAB to produce projections along known lines of sight to perform tomographic reconstructions. These projections and reconstructions were performed on a single object at two orientations, representing two timesteps, to increase the reconstruction accuracy.

36 MATERIALS SCIENCE↗

NASA NTRSDate not supplied

The Porous Microstructure Analysis (PuMA) software

The open-source Porous Microstructure Analysis (PuMA) software was created to offer an efficient framework for determining material properties from 3D microstructures. Its development was inspired by progress in X-ray microtomography, an imaging technology that captures the internal structure of materials in 3D, and even in a 4D temporal context. Over recent years, this method has transformed the domain of materials science due to its capability to non-destructively examine material microstructures while presenting digital data about their geometrical details. It has provided insights into materials relevant to several NASA missions, including heatshields, parachute fabrics, meteorites, and other advanced composites. PuMA, in its current version 3, delivers an array of features, spanning from basic geometric insights of a microstructure to intricate anisotropic thermo-elastic and chemical behavior. Specifically, the software evaluates morphological attributes (specific surface area, volume fractions, mean intercept lengths, orientation) and physical characteristics (conductivity, elasticity, permeability, and tortuosity). Additionally, it can model material degradation processes, such as oxidation and surface chemistry interactions. The software can generate synthetic microstructures, from straightforward geometrical designs to intricate woven and non-woven geometries. Coupling material generation and characterization enables parametric studies and sensitivity analysis to optimize the microstructural performance and inform design decisions and reliability assessment based on uncertainty quantification. A recent addition to PuMA includes the TomoSAM plugin, devised to incorporate the cutting-edge Segment Anything Model (SAM) into our image segmentation workflow. SAM is a promptable deep learning model that can identify objects and create image masks in a zero-shot manner, based only on a few user clicks. The synergy between these tools aids in the segmentation of complex 3D datasets from tomography and other imaging techniques, which would otherwise require a laborious manual segmentation process.

Tomography↗

NASA NTRSDate not supplied

Mapping Inundation from Hurricane Florence (2018) with L-Band Synthetic Aperture Radar, Commercial Imagery, and Ancillary Data via Random Forest Classification

Mapping the extent of floodwaters following extreme rainfall aids in the distribution of resources, recovery efforts, and damage assessment practices. Development of a land cover classification system focused on mapping inundation after major hurricane events using synthetic aperture radar (SAR) data could allow for the production of near-real-time inundation mapping, enabling government and emergency response entities to get a preliminary idea of a developing situation. In response to Hurricane Florence of 2018, NASA JPL collected numerous swaths of quad-pol L-band SAR data with the Uninhabited Aerial Vehicle Synthetic Aperture Radar (UAVSAR) instrument observing the record-setting river stages across North and South Carolina. The resulting fully-polarized SAR images allow for mapping of inundation extent at a high spatial resolution with a unique advantage over optical imaging stemming from the sensor’s ability to penetrate cloud cover and dense vegetation. This study seeks to determine how accurately maps of inundation can be generated from L-band SAR imagery through Random Forest classification. Once the extent of water and inundated vegetation is classified, cleanup operations are performed using fuzzy logic to reduce false detections. Estimates of water extent are then combined with datasets describing the distribution of population, buildings, and roads throughout the domain to evaluate societal impacts. Results from the Hurricane Florence case study will be discussed along with the limitations of available validation data for assessment of the classifier’s accuracy.

Alexander Melancon↗

NASA NTRSDate not supplied

Flood Detection with Synthetic Aperture Radar: A Case Study of Houston, Texas Following Hurricane Harvey (2017) using C- and X-Band Observations

Hurricane Harvey produced record-breaking rainfall of up to 60 inches resulting in extensive flooding in Houston, Texas, in late August and early September of 2017. The slow forward motion of the storm following landfall left much of the area unobservable to optical remote sensing instruments for several days due to cloud cover. The active nature of Synthetic Aperture Radar (SAR) instruments allows for observations through clouds, which can supplement efforts to estimate hurricane-induced flood impacts. A growing fleet of SAR constellations has helped lower the latency of imagery following a hurricane, allowing for more timely detections of flooding to help support emergency response efforts. In this study, we leverage publicly available C-band SAR observations from the European Space Agency’s Sentinel-1B (S1B) satellite, collected on 30 August, and X-band SAR imagery collected on 1 September by the Airbus TanDEM-X (TDX) satellite made available through the NASA Commercial Smallsat Data Acquisition (CSDA) program. For each dataset, one co-polarized, StripMap, Radiometric Terrain Corrected (RTC) image was used to create a binary water/no water classification map by referencing permanent water in the Cropland Data Layer (CDL) dataset to determine thresholds. A validation dataset of randomly distributed “ground truth” points was generated using optical imagery from PlanetScope on 31 August, where the domain had relatively little cloud cover. We found that the S1B- and TDX-derived open water maps achieved overall accuracies of 94.17% and 91.57%, respectively. The variation in performance is attributed to both the penetrative abilities of C- and X-band SAR wavelengths in vegetated areas and the increased spatial resolution of the commercial SAR (~3 m) over Sentinel-1 (30 m). While publicly available Sentinel-1 observations are commonly relied upon in response and recovery efforts, these results suggest that including commercial X-band SAR imagery could be beneficial by providing both increased spatial resolution and more frequent revisits when deriving post-event flood mapping products.

Alexander M Melancon↗

DOE OSTI2025

A DATA EFFICIENT SPARSE MODELING FRAMEWORK FOR POWER ESTIMATION IN WATER TREATMENT SENSING OPERATIONS

With increasing freshwater scarcity, advanced process design mechanisms such as Closed-Circuit Reverse Osmosis (CCRO) and Digital/Physical Twin systems are gaining traction in water treatment and reuse operations. While digital and physical twin models enable improved system insight and control, their development is often expensive and computationally intensive, requiring large volumes of synthetic or experimental data to characterize underlying process dynamics. This work introduces a sparse surrogate modeling framework to estimate power consumption from measured flow and pressure variables, along with their nonlinear polynomial and interaction expansions. To ensure model reliability and reduce overfitting, a two-stage pipeline is proposed. First, a dynamic data filtering algorithm is employed to remove uninformative observations and transient operational states. Second, a sparse penalized regression technique is applied to select a minimal set of parsimonious features. The proposed model achieves high sparsity, retaining only 7 out of 34 candidate features (≈79.41% sparsity) while delivering a root mean square error (RMSE) of 0.072 on the test dataset.

Mukherjee, Subrata [ORNL] (ORCID:0000000309930338)↗

NASA NTRS1999

An Application of Rotation- and Translation-Invariant Overcomplete Wavelets to the Registration of Remotely Sensed Imagery

A wavelet-based image registration approach has previously been proposed by the authors. In this work, wavelet coefficient maxima obtained from an orthogonal wavelet decomposition using Daubechies filters were utilized to register images in a multi-resolution fashion. Tested on several remote sensing datasets, this method gave very encouraging results. Despite the lack of translation-invariance of these filters, we showed that when using cross-correlation as a feature matching technique, features of size larger than twice the size of the filters are correctly registered by using the low-frequency subbands of the Daubechies wavelet decomposition. Nevertheless, high-frequency subbands are still sensitive to translation effects. In this work, we are considering a rotation- and translation-invariant representation developed by E. Simoncelli and integrate it in our image registration scheme. The two types of filters, Daubechies and Simoncelli filters, are then being compared from a registration point of view, utilizing synthetic data as well as data from the Landsat/ Thematic Mapper (TM) and from the NOAA Advanced Very High Resolution Radiometer (AVHRR).

LeMoigne, Jacqueline↗

NASA NTRS1999

An Application of Rotation- and Translation-Invariant Overcomplete Wavelets to the registration of Remotely Sensed Imagery

LeMoigne, Jacqueline↗

DOE OSTI2022

Tritium Fires: Simulation and Safety Assessment

This is the Sandia report from a joint NSRD project between Sandia National Labs and Savannah River National Labs. The project involved development of simulation tools and data intended to be useful for tritium operations safety assessment. Tritium is a synthetic isotope of hydrogen that has a limited lifetime, and it is found at many tritium facilities in the form of elemental gas (T 2 ). The most serious risk of reasonable probability in an accident scenario is when the tritium is released and reacts with oxygen to form a water molecule, which is subsequently absorbed into the human body. This tritium oxide is more readily absorbed by the body and therefore represents a limiting factor for safety analysis. The abnormal condition of a fire may result in conversion of the safer T 2 inventory to the more hazardous oxidized form. It is this risk that tends to govern the safety protocols. Tritium fire datasets do not exist, so prescriptive safety guidance is largely conservative and reliant on means other than testing to formulate guidelines. This can have a consequence in terms of expensive and/or unnecessary mitigation design, handling protocols, and operational activities. This issue can be addressed through added studies on the behavior of tritium under representative conditions. Due to the hazards associated with the tests, this is being approached mainly from a modeling and simulation standpoint and surrogate testing. This study largely establishes the capability to generate simulation predictions with sufficiently credible characteristics to be accepted for safety guidelines as a surrogate for actual data through a variety of testing and modeling activities.

11 NUCLEAR FUEL CYCLE AND FUEL MATERIALS↗

DOE OSTI2021

Compaction of crushed salt for safe containment – overview of the KOMPASS project

Abstract. In Germany, rock salt formations are possible host rock candidates for a repository for heat-emitting radioactive waste. The safety concept of a repository in salt bases on a multibarrier system consisting mainly of the geological barrier salt and geotechnical seals ensuring safe containment. Crushed salt will be used for backfilling of cavities and sealing measures in drifts and shafts due to its favourable properties and its easy availability (mined-off material). The creep of the rock salt leads to crushed salt compaction with time. Thereby, the crushed salts' porosity is reduced from the initial porosity of 30 %–40 % to a value comparable to the porosity of undisturbed rock salt (≤1 %). In such low porosity ranges, technical impermeability is assumed. The compaction behaviour of crushed salt is rather complex and involves several coupled THM processes (Kröhn et al., 2017; Hansen et al., 2014). It is influenced by internal properties like humidity and grain size distribution, as well as boundary conditions such as temperature, compaction rate or stress state. However, the current process understanding has some important gaps referring to the material behaviour, experimental database and numerical modelling. It needs to be extended and validated, especially in the low porosity range. The objective of the KOMPASS project was development of methods and strategies for the reduction of deficits in the prediction of crushed salt compaction leading to an improvement of the prognosis quality. Key results are as follows (KOMPASS Phase 1, 2020): selection of an easily available and permanently producible synthetic crushed salt mixture, acting as a reference material for generic investigations; development and proof of different techniques for producing pre-compacted samples for further investigations; establishment of a tool of microstructure investigation methods to demonstrate the comparability of grain structures of pre-compacted samples with in-situ compacted material for future investigations; execution of various laboratory experiments using pre-compacted samples, e.g. long-term creep tests which deliver reliable information about time- and stress-dependent compaction behaviour; development of a complex experimental investigation strategy to derive necessary model parameters considering individual functional dependencies. Its technical feasibility was successfully verified; benchmarking with various existing numerical models using datasets from three different triaxial long-term tests. The result was not entirely satisfactory; however, the number of influencing factors is small and further validation work has to be done. Overall, the KOMPASS project has made significant progress in the approaches to solving the outstanding question, building the basis for further investigations.

Friedenberg, Larissa↗

DOE OSTI2025

Data-driven organic solubility prediction at the limit of aleatoric uncertainty

Abstract Small molecule solubility is a critically important property which affects the efficiency, environmental impact, and phase behavior of synthetic processes. Experimental determination of solubility is a time- and resource-intensive process and existing methods for in silico estimation of solubility are limited by their generality, speed, and accuracy. This work presents two models derived from the FASTPROP and CHEMPROP architectures and trained on BigSolDB which are capable of predicting solubility at arbitrary temperatures for a wide range of small molecules in organic solvent. Both extrapolate to unseen solutes 2–3 times more accurately than the current state-of-the-art model and we demonstrate that they are approaching the aleatoric limit (0.5–1$$\log S$$ log S ) of available test data, suggesting that further improvements in prediction accuracy require more accurate datasets. The FASTPROP-derived model (called FASTSOLV) and the CHEMPROP-based model are open source, freely accessible via a Python package and web interface, highly reproducible, and up to 2 orders of magnitude faster than current alternatives.

Science & Technology - Other Topics↗

DOE OSTI2025

Anomaly Detection in Seismic Data with Deep Learning: Application for Instrument Failure Detection and Forecasting

Seismic data quality assessment (QA) is the first and one of the most important steps before conducting any further data analysis. Traditional methods involve checking various metrics, such as spike detection and power spectral density, by setting strict thresholds or comparing data against synthetic benchmarks. However, these approaches often rely on pre-existing knowledge and assumptions about data anomalies, leading to potential misclassification of unusual cases. Here, in this study, we propose a deep autoencoder model, an unsupervised learning approach that evaluates data quality without making assumptions about normal and anomalous data, which can be used to identify deviations in recorded data that may indicate nascent instrument failure. We test the model with the U.S. International Monitoring System (IMS) seismic stations and demonstrate the capability of detecting anomalies on a monthly scale. This could prompt station operators to examine potential problems early, allowing sufficient time for instrument maintenance to prevent data outages. In addition, we use a new manually selected testing dataset to compare our model performance against two supervised machine learning (ML) approaches and a standard QA package, as baseline models. When applied to the dataset containing known data anomalies, performance of the supervised and unsupervised ML approaches is similar, with an accuracy of 88.1% for our model compared to ∼90% for the supervised ML approach and 78.2% for the standard QA package. Our model outperforms the baseline models when applied to new stations, where new types of data anomalies can be station-specific and not included in the training dataset. Finally, we show model transferability by training the model with data from the Global Seismograph Network only and applying it to the IMS network data. The results suggest that our model is generalizable and can be applied to new stations with good accuracy.

Lin, Jiun-Ting [Lawrence Livermore National Labora↗

DOE OSTI2022

Life-cycle Analysis of Conversion of Post-Use Plastic via Pyrolysis with the GREET Model

In this report, we present an updated LCA of the PTF pathway developed at Argonne. Benavides et al. (2017) analyzed the environmental impact of producing ultra-low sulfur (ULS) diesel fuel from PUP via pyrolysis (the most common PTF technology). We used the Greenhouse gases, Regulated Emissions, and Energy use in Technologies (GREET®) model and collected data from eight PTF companies to assess the potential energy and environmental benefits associated with this technology (Argonne, 2020). We conducted a survey and aggregated the dataset based on the different responses, which included plant capacity, process yields, feedstock composition, material and energy inputs, and outputs, and other parameters. We calculated the energy, greenhouse gas (GHG) emissions, and water consumption of its intermediate product pyrolysis oil and final product PUP-derived ULS diesel and compared the results to those metrics for their conventional counterparts (crude naphtha and petroleum ULS diesel fuel).

10 SYNTHETIC FUELS↗