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At least 469 records · Page 26

A Standard RNA Sequencing Assay for Space Biology

Given the limited opportunities for biological experimentation in space, it is often desirable to compare results across experiments to gain additional insights into the effects of spaceflight on biological systems. However, this approach is made difficult by a multitude of confounding factors including differences in strain, hardware configuration, and sample processing. To help harmonize datasets, the NASA GeneLab Project has developed consistent sample and data processing protocols for the generation of raw and processed RNA-sequencing data from various mouse tissues. We will present these and discuss how they can be used to make novel discoveries from these precious samples.

Galazka, Jonathan↗

NASA GeneLab Platform Utilized for Biological Response to Space Radiation in Animal Models

Ionizing radiation from Galactic Cosmic Rays (GCR) is one of the major risk factors that will impact the health of astronauts on extended missions outside the protective effects of Earth’s magnetic field. The NASA GeneLab project has detailed information on radiation exposure using animal models with curated dosimetry information for spaceflight experiments. We analyzed multiple GeneLab omics datasets associated with both ground-based and spaceflight radiation studies that included in vivo and in vitro approaches. A range of ions from protons to iron particles with doses from 0.1 Gy to 1.0 Gy for ground studies and samples flown in Low Earth Orbit (LEO) with total doses of 1.0 mGy to 30 mGy were utilized From this analysis we were able to identify distinct biological signatures associating specific ions with specific biological responses due to radiation exposure in space. For example, we discovered changes in mitochondrial function, ribosomal assembly, and immune pathways as a function of dose. We provided a summary of how the GeneLab’s rich database of omics experiments with animal models can be used to generate novel hypotheses to better understand human health risks from GCR exposures.

Afshin Beheshti↗

NASA GeneLab Platform Utilized for Space Radiation Dosimetry Biological Response Compared to Radiation Ground Studies

Ionizing radiation from Galactic Cosmic Rays (GCR) is one of the major risk factors that will impact the health of astronauts on extended missions outside the protective effects of Earth’s magnetic field. The NASA GeneLab project has detailed information on radiation exposure using animal models with curated dosimetry information for spaceflight experiments. We analyzed multiple GeneLab omics datasets associated with both ground-based and spaceflight radiation studies that included in vivo and in vitro approaches. A range of ions from protons to iron particles with doses from 0.1 Gy to 1.0 Gy for ground studies and samples flown in Low Earth Orbit (LEO) with total doses of 1.0 mGy to 30 mGy were utilized From this analysis we were able to identify distinct biological signatures associating specific ions with specific biological responses due to radiation exposure in space. For example, we discovered changes in mitochondrial function, ribosomal assembly, and immune pathways as a function of dose. We provided a summary of how the GeneLab’s rich database of omics experiments with animal models can be used to generate novel hypotheses to better understand human health risks from GCR exposures.

Afshin Beheshti↗

NASA GeneLab: The NASA Systems Biology Platform for Spaceomics Repository, Analysis and Visualization

At NASA Ames Research Center, the GeneLab Open Science Project is on a mission to gather all large -omics datasets relevant to space biology research. These datasets come from various organisms flown in multiple space habitats such as the International Space Station or the Space Shuttle, in addition to mimicking space-like conditions on ground. Researchers and citizen scientists all around the world have used the data and the analytical tools put together by the GeneLab team to start deciphering new biological impact of microgravity, space ionizing radiation and other space stressors.

GeneLab↗

Modelling and Laboratory Testing of Particle Resuspension and Transport for the Assessment of Terrestrial-Borne Biological Contamination of the Samples on the Mars 2020 Mission

The Mars 2020 mission will land a rover on the surface of Mars that will acquire, encapsulate, and cache scientifically selected samples of martian material for possible return to Earth by a future mission. The samples will be individually encapsulated and sealed in sample tubes. Each sample, and therefore each sample tube, must be kept clean of viable organisms with a terrestrial origin, which may adhere to the rover on their own and/or on other non-biological particles. Therefore, contrary to previous missions to the Red Planet, Mars 2020 is subject to new and more stringent biological, organic and inorganic contamination requirements. This paper reports on the analyses and testing performed to assess the various vectors that can lead to the terrestrial-borne contamination of the samples, focusing on those that are predicted to be the larger contributors. Specifically, the contamination of the sample tubes is expected to be very small prior to the commencement of the mission’s science phase since these tubes are protected by so-called Fluid Mechanical Particle Barriers. Once on the surface of Mars however the sample tubes will be removed from their FMPBs and be subject to contamination from the rover. Of specific interest is the vector by which winds dislodge some particles from the surface of the rover and transport them to the surrounding soil. Naturally, such assessments require multi-disciplinary analyses involving at minimum the physics of particle adhesion and resuspension from surfaces, fluid mechanics and aerosols. Here we provide an overview of these models. We also report on particle resuspension experiments we have performed at the Jet Propulsion Laboratory to both guide and validate the aforementioned physics models.

Steltzner, Adam↗

National Academy’s Committee on Biological and Physical Sciences in Space

Protect current and future scientific investigations by limiting biological and relevant molecular contamination of other solar system bodies through exploration activities and protecting the Earth’s biosphere by avoiding harmful biological contamination carried on returning spacecraft, as described in the Outer Space Treaty.

Earth↗

Campaign: Telemetry-based Biology for the Artemis Era and Beyond

We call for a major dedicated campaign to develop and fly autonomous biological payloads in lunar orbit and on the lunar surface during the next decade, followed by subsequent expansion to Martian orbit. This ambitious goal will require dedicated effort to develop hardware, biological models and data acquisition and processing techniques. We believe that it would be best achieved as a single comprehensive, NASA-led and funded mission project, analogous to planetary science missions. Furthermore, technological developments should be accompanied by collaborations within and between agencies and a robust program for acquisition and retention of talented scientists and engineers.

Egle Cekanaviciute↗

Synthetic biology off planet for game-changing solutions for a greener Earth

Synthetic biology – creating new capabilities with life – promises to create a greener future for planet Earth, from fields as diverse as pharmaceuticals to manufacturing, agriculture and nanotechnology. Progress can be stymied by such considerations as economics, politics, legal and philosophical issues surrounding GMOs. Often solutions to these problems already exist, so it is difficult for a new, superior method to displace the old. As we move humans beyond Earth, to long duration stays in the International Space Station, and then onward to the Moon and Mars, the challenges of supporting human life will need radical new solutions. For example, while life on Earth uses an enzymatic machinery which evolved close to 3 billion years ago, synthetic biology promises to be able to engineer the systems to adapt to current natural or industrial environments. A focus on solutions off planet require a focus on a circular economy. While there are new constraints, such as worrying about the mass of a solution, constraints offer opportunities for game-changing solutions that will then allow revolutions back on our home planet.

Lynn J Rothschild↗

ISRU: Using Biology to Produce Food and Oxygen from Resources on Mars

Any crewed mission to Mars is a “biological” mission. As we move farther away from Earth, we will have to produce the required food, water and nutrient resources to sustain the crew in route or on the surface of other planetary bodies. Critical nutrients, like vitamins, have been shown to degrade in our current food system and represent a risk to long term crew health. One way to address this problem is by developing reliable Biological Life Support Systems (BLSS) that can provide fresh, nutrient-rich foods. Much work in this area will be done as we learn to live and work on the Moon. Systems developed for the Moon should also work on Mars, but will not be designed to take advantage of resources that Mars offers: CO2, more abundant water, and a day length similar to Earth’s. The photosynthetic portion of a BLSS can act as an ISRU element on Mars by providing human life support needs. There is an urgent need to understand how to build components of a fully functional BLSS. One Mars Exploration Program Analysis Group (MEPAG) goal relates to this area.

B. M. Link↗

Large Scale Transcriptional Analysis of Legacy Spaceflight Tissues From the Nasa Biological Institutional Science Collection

The NASA Biological Institutional Science Collection (NBISC) has amassed a collection of valuable space biology samples spanning from early Space Shuttle missions to recent missions on the International Space Station (ISS). However, the full potential of this archive has not been realized, with many samples having been stored for decades without being re-accessed. Given the pace of analytical advancement since NBISC began accumulating samples, we initiated a pilot study to reveal additional patterns that may have been missed during the original investigations and provide technical robustness and scientific value for a cost-effective sequencing approach. We selected 84 mouse and rat samples spanning four separate Space Shuttle, ISS and ground-analogue studies with a focus on muscle, spleen and thymus tissues to allow identification of important changes related to musculoskeletal unloading and immune function. High quality RNA from these tissues was extracted and used to generate transcriptional profiling data using a cost-effective Tag-seq approach and immediately released it on GeneLab. The released datasets included gastrocnemius tissues from rats during the 1991 Space Shuttle mission (GLDS-422) and a ground analogue study in 2019 (GLDS-418), and mice from the 2014 ISS mission (GLDS-419). Also released were two thymus datasets, one from rats flown on the 1993 Space Shuttle (GLDS-423) and another from mice flown on the 2017 ISS (GLDS-421) missions, along with one mouse spleen dataset from a 2017 ISS mission (GLDS-420). These data will serve as a pilot of a much larger and comprehensive study which would generate similar data from thousands of NBISC samples, enabling the discovery and validation of molecular networks influenced by space conditions.

Lovorka Degoricija↗

Quantifying Structural Relationships of Metal-Binding Sites Suggests Origins of Biological Electron Transfer

Biological redox reactions drive planetary biogeochemical cycles. Using a novel, structure-guided sequence analysis of proteins, we explored the patterns of evolution of enzymes responsible for these reactions. Our analysis reveals that the folds that bind transition metal–containing ligands have similar structural geometry and amino acid sequences across the full diversity of proteins. Similarity across folds reflects the availability of key transition metals over geological time and strongly suggests that transition metal–ligand binding had a small number of common peptide origins. We observe that structures central to our similarity network come primarily from oxidoreductases, suggesting that ancestral peptides may have also facilitated electron transfer reactions. Last, our results reveal that the earliest biologically functional peptides were likely available before the assembly of fully functional protein domains over 3.8 billion years ago. Thus, life is a special, very complex form of motion of matter, but this form did not always exist, and it is not separated from inorganic nature by an impassable abyss; rather, it arose from inorganic nature as a new property in the process of evolution of the world. We must study the history of this evolution if we want to solve the problem of the origin of life.

Yana Bromberg↗

The NASA Biological Institutional Scientific Collection (NBISC): Tissue and Microbe Biospecimens to Advance Space Research

The NASA Biological Institutional Scientific Collection (NBISC) is a biorepository of non-human biospecimens from NASA-funded spaceflight investigations and correlative ground studies. The collection has its roots in the 1960s through collaborations by NASA Ames Research Center with other NASA centers, universities, and international space agencies by sharing non-human biospecimens from spaceflight and space-relevant ground experiments. These collaborations have advanced the field of space exploration by helping to maximize the data gained from spaceflight and other NASA-funded experiments. NBISC coordinates closely with the Biospecimen Sharing Program (BSP) which is responsible for organized sample collection from spaceflight and ground rodent experiments. In 2022 NBISC partnered with HRP’s Biospecimen and Tissue Sharing Collection (BTSC) Program to also archive samples from HRP’s Space Radiation Element-funded studies which primarily involve rodents exposed to various radiation protocols at the NASA Space Radiation Laboratory (NSRL) and other analog facilities. To date, more than fifty thousand biospecimens from BTSC have been transferred to NBISC for distribution to the community. In 2023, NBISC embarked on a new Space Biology funded endeavor to create the Space Microbial Culture Collection (SMCC) which will serve as a central repository for microbial isolates associated with space flight, gravitational, and space radiation research. This presentation will highlight several success stories of analyses carried out using archived NBISC samples received by researchers in recent years and will detail the process for proposing and receiving samples from NBISC, BTSC and SMCC. Making available these 150,000+ unique biospecimens to the scientific research community, NBISC not only serves as a repository for storing and distributing non-human biospecimens, but also acts as a resource to enable new discoveries that will benefit NASA and humankind.

Biospecimen↗

Independent Scientific Review of Biological Assumptions and Planned Ultraviolet Treatment for Mars Sample Return Backward Planetary Protection

The Backward Planetary Protection Study Team (“the Study Team”), assembled by the Office of the Chief Scientist (OCS) at the request of the Office of Planetary Protection (OPP), has conducted numerous detailed discussions on the potential use of an active ultraviolet (UV) approach for minimizing or eliminating biological contamination of the exterior of the planned Orbiting Sample container (OS) of the Mars Sample Return (MSR) mission. This review of the backward planetary protection (BPP) considerations for the MSR mission focused on two key parameters that are opportunities for further process development to support implementation of planetary protection practices in meeting mission requirements. These parameters include: 1) Sub-cellular biological assumptions – should Mars missions consider self-replicating organisms only or do they need to consider non-self-replicating entities without a cellular organization such as viruses, prions, etc. and macromolecules capable of genetic information transfer, as well? 2) UV biocidal impact – what is the UV fluence in the Mars atmosphere and its associated potential biocidal credit? The assembled subject matter experts (SMEs) in the Study Team are listed in Appendix A, with a brief description of each member’s relevant expertise.

Mamta Patel Nagaraja↗

Environmental Biology.

Book on environmental biology covering effects of temperature, radiant energy, acceleration and gravity, etc

ENVIRONMENTAL SCIENCE↗

Gravitational studies in cellular and developmental biology

The paucity of data on the role of gravity in cellular and developmental biology has been examined, and a hypothesis has been generated that unifies potential gravity sensitivity in both plant and animal systems. This hypothesis considers the macromolecular order and functional importance of the extracellular matrix compartment, the intracellular cytoskeleton compartment, and the connecting plasma membrane-signal transduction compartment of plant and animal systems as potentially sensitive to alterations in the unit gravity environment in which they evolved.

NASA Discipline Developmental Biology↗

Paths and patterns: the biology and physics of swimming bacterial populations

The velocity distribution of swimming micro-organisms depends on directional cues supplied by the environment. Directional swimming within a bounded space results in the accumulation of organisms near one or more surfaces. Gravity, gradients of chemical concentration and illumination affect the motile behaviour of individual swimmers. Concentrated populations of organisms scatter and absorb light or consume molecules, such as oxygen. When supply is one-sided, consumption creates gradients; the presence of the population alters the intensity and the symmetry of the environmental cues. Patterns of cues interact dynamically with patterns of the consumer population. In suspensions, spatial variations in the concentration of organisms are equivalent to variations of mean mass density of the fluid. When organisms accumulate in one region whilst moving away from another region, the force of gravity causes convection that translocates both organisms and dissolved substances. The geometry of the resulting concentration-convection patterns has features that are remarkably reproducible. Of interest for biology are (1) the long-range organisation achieved by organisms that do not communicate, and (2) that the entire system, consisting of fluid, cells, directional supply of consumables, boundaries and gravity, generates a dynamic that improves the organisms' habitat by enhancing transport and mixing. Velocity distributions of the bacterium Bacillus subtilis have been measured within the milieu of the spatially and temporally varying oxygen concentration which they themselves create. These distributions of swimming speed and direction are the fundamental ingredients required for a quantitative mathematical treatment of the patterns. The quantitative measurement of swimming behaviour also contributes to our understanding of aerotaxis of individual cells.

Non-NASA Center↗