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At least 469 records · Page 26

Delay-Throughput Performance of the Deep-Space Ka-band Link

In this paper, performance of a first-in, first-out (FIFO), selective retransmission scheme for the deep-space Ka-band link is presented and compared to the performance of a comparable X-band link. In this analysis, 16 months of water vapor radiometer (WVR) and advanced water vapor radiometer (AWVR) data from the three Deep Space Network (DSN) Communication Complexes (DSCC) were used to emulate weather effects on X-band and Ka-band links from Mars. Mars Reconnaissance Orbiter (MRO) X-band and Ka-band telecommunications parameters were used for spacecraft telecommunications capabilities. One pass per week per complex was selected from MRO's Deep Space Network (DSN) schedule from April 1, 2006 to August 31, 2007 for a total of 207 passes (69 passes per complex) for this analysis. For each pass both X-band and Ka-band links were designed using at most two data rates so that the expected pass capacity would be maximized subject to a minimum availability requirement (MAR). In conjunction with the WVR/AWVR data, elevation profiles of the selected passes and models for the performance of the antennas in the DSN were used to emulate the performance of both links. It was assumed that the retransmission of the data takes place not on the same pass as the original transmission but during subsequent passes. The data collected before a pass was assumed to be a fraction of the expected capacity of the pass as calculated through the link design process. Infinite spacecraft storage was assumed to obtain an upper bound on the spacecraft storage requirement. The independent parameters of this analysis were MAR and the ratio of data collected before a pass to the expected pass capacity. Since the selected passes did not occur at regular intervals, the delay in this analysis was measured in terms of number of passes. The throughput was measured in terms of number of bits received successfully on the ground. The results indicate that reasonable delay performance could be achieved with very high throughput for relatively low MAR values for data collection to expected pass capacity ratio of around 97% for Ka-band. The results indicate that, except for very low average delay requirements, the Ka-band link provides more than twice the throughput of the X-band link for the same amount of power consumed by the spacecraft. In addition, the results indicate that the required storage onboard the spacecraft is not prohibitive and good performance could be achieved by using a buffer size less than three times the maximum amount of data collected before a pass.

Shambayati, Shervin↗

Delay-Throughput Performance the Deep-Space Ka-Band Link

In this paper, performance of a first-in, first-out (FIFO), selective retransmission scheme for the deep-space Ka-band link is presented and compared to the performance of a comparable X-band link. In this analysis, 16 months of water vapor radiometer (WVR) and advanced water vapor radiometer (AWVR) data from the three Deep Space Network (DSN) Communication Complexes (DSCC) were used to emulate weather effects on X-band and Ka-band links from Mars. Mars Reconnaissance Orbiter (MRO) X-band and Ka-band telecommunications parameters were used for spacecraft telecommunications capabilities. One pass per week per complex was selected from MRO's Deep Space Network (DSN) schedule from April 1, 2006 to August 31, 2007 for a total of 207 passes (69 passes per complex) for this analysis. For each pass both X-band and Ka-band links were designed using at most two data rates so that the expected pass capacity would be maximized subject to a minimum availability requirement (MAR). In conjunction with the WVR/AWVR data, elevation profiles of the selected passes and models for the performance of the antennas in the DSN were used to emulate the performance of both links. It was assumed that the retransmission of the data takes place not on the same pass as the original transmission but during subsequent passes. The data collected before a pass was assumed to be a fraction of the expected capacity of the pass as calculated through the link design process. Infinite spacecraft storage was assumed to obtain an upper bound on the spacecraft storage requirement. The independent parameters of this analysis were MAR and the ratio of data collected before a pass to the expected pass capacity. Since the selected passes did not occur at regular intervals, the delay in this analysis was measured in terms of number of passes. The throughput was measured in terms of number of bits received successfully on the ground. The results indicate that reasonable delay performance could be achieved with very high throughput for relatively low MAR values for data collection to expected pass capacity ratio of around 97% for Ka-band. The results indicate that, except for very low average delay requirements, the Ka-band link provides more than twice the throughput of the X-band link for the same amount of power consumed by the spacecraft. In addition, the results indicate that the required storage onboard the spacecraft is not prohibitive and good performance could be achieved by using a buffer size less than three times the maximum amount of data collected before a pass.

Shambayati, Shervin↗

A Near-Infrared Spectrometer to Measure Zodiacal Light Absorption Spectrum

We have developed a high throughput infrared spectrometer for zodiacal light fraunhofer lines measurements. The instrument is based on a cryogenic dual silicon Fabry-Perot etalon which is designed to achieve high signal to noise Fraunhofer line profile measurements. Very large aperture silicon Fabry-Perot etalons and fast camera optics make these measurements possible. The results of the absorption line profile measurements will provide a model free measure of the zodiacal Light intensity in the near infrared. The knowledge of the zodiacal light brightness is crucial for accurate subtraction of zodiacal light foreground for accurate measure of the extragalactic background light after the subtraction of zodiacal light foreground. We present the final design of the instrument and the first results of its performance.

Kutyrev, A. S.↗

Multilayer Monochromator For Hard X Rays And Gamma Rays

Compact monochromator for hard x rays and gamma rays provides high spectral resolution with high throughput. Resembles instruments in "Compact X-Ray and Extreme-Ultraviolet Monochromator" (MFS-28499), "Scanning X-Ray or Extreme-Ultraviolet Monochromator" (MFS-28492), "Ultra-High-Spectral-Resolution X-Ray/EUV Monochromator" (MFS-28500), and "Four-Mirror X-Ray and Extreme-Ultraviolet Monochromator" (MFS-28498). Operates on principle of multilayer Bragg reflector. Used in nuclear, astronomical, and biomedical research, x-ray crystallography, research on processing materials, research in x-ray lasers, and x-ray lithography.

Hoover, Richard B.↗

POINTS (Precision Optical INTerferometer in Space)

POINTS is a high-precision, high-throughput interferometer intended for astromomy only. It can perform science compatable with astrophysics (AIM) and planet detection (TOPS-1). The spacecraft will be compact, lightweight, and suitable for high Earth orbit. It will employ the minimal number and complexity of mechanisms or deployable parts and be designed for a 10 year mission life.

interferometer astronomy satellite↗

Microscale Metal Additive Manufacturing by Solid‐State Impact Bonding of Shaped Thin Films

The deposition of device-grade inorganic materials is one key challenge toward the implementation of additive manufacturing (AM) in microfabrication, and to that end, a broad range of physico-chemical principles has been explored for 3D fabrication with micro- and nanoscale resolution. Yet, for metals, a process that achieves material quality rivalling that of established thin-film deposition methods, and at the same time, has the potential to combine high throughput production with a broad palette of processable materials, is still lacking. Here, the kinetic, solid-state bonding of metal thin films for the additive assembly of high-purity, high-density metals with micrometer-scale precision is introduced. Indirect laser ablation accelerates micrometer-thick gold films to hundreds of meters per second without their heating or ablation. Their subsequent impact on the substrate above a critical velocity forms a permanent, metallic bond in the solid state. Stacked layers are of high density (>99%). By defining thin-film layers with established lithographic methods prior to launch, a variable feature size (2–50 µm), arbitrary shape of bonded layers, and parallel transfer of up to 36 independent film units in a single shot, is demonstrated. Thus, the solid-state kinetic bonding principle as a viable and potentially versatile route for micro-scale AM of metals is established.

3D printing↗

Application of holographic optical techniques to bulk memory.

Current efforts to exploit the spatial redundancy and built-in imaging of holographic optical techniques to provide high information densities without critical alignment and tight mechanical tolerances are reviewed. Read-write-erase in situ operation is possible but is presently impractical because of limitations in available recording media. As these are overcome, it should prove feasible to build holographic bulk memories with mechanically replaceable hologram plates featuring very fast (less than 2 microsec) random access to large (greater than 100 million bit) data blocks and very high throughput (greater than 500 Mbit/sec). Using volume holographic storage it may eventually be possible to realize random-access mass memories which require no mechanical motion and yet provide very high capacity.

Anderson, L. K.↗

Transcriptomics-based Machine Learning (ML) Analysis Predicts Space-Exposed Murine Livers

NASA has employed high-throughput molecular assays to identify sub-cellular changes impacting human physiology during spaceflight. Machine learning (ML) methods hold the promise to improve our ability to identify important signals within highly dimensional molecular data. However, the inherent limitation of study subject numbers within a spaceflight mission minimizes the utility of ML approaches. To overcome the sample power limitations, data from multiple spaceflight missions must be aggregated while appropriately addressing intra- and inter-study variabilities. Here we describe an approach to log transform, scale and normalize data from six heterogeneous, mouse liver derived transcriptomics datasets (ntotal=137) which enabled ML-methods to perform well (AUC ≥ 0.87) in classifying spaceflown vs ground control animals rather than mission-of-origin. Concordance was found between liver-specific biological processes identified from harmonized ML-based analysis and study-by-study classical omics analysis. This work demonstrates the feasibility of applying ML methods on integrated, heterogeneous datasets of small sample size.

Machine Learning↗

Nanobody screening and machine learning guided identification of cross-variant anti-SARS-CoV-2 neutralizing heavy-chain only antibodies

Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) continues to persist, demonstrating the risks posed by emerging infectious diseases to national security, public health, and the economy. Development of new vaccines and antibodies for emerging viral threats requires substantial resources and time, and traditional development platforms for vaccines and antibodies are often too slow to combat continuously evolving immunological escape variants, reducing their efficacy over time. Previously, we designed a next-generation synthetic humanized nanobody (Nb) phage display library and demonstrated that this library could be used to rapidly identify highly specific and potent neutralizing heavy chain-only antibodies (HCAbs) with prophylactic and therapeutic efficacy in vivo against the original SARS-CoV-2. In this study, we used a combination of high throughput screening and machine learning (ML) models to identify HCAbs with potent efficacy against SARS-CoV-2 viral variants of interest (VOIs) and concern (VOCs). To start, we screened our highly diverse Nb phage display library against several pre-Omicron VOI and VOC receptor binding domains (RBDs) to identify panels of cross-reactive HCAbs. Using HCAb affinity for SARS-CoV-2 VOI and VOCs (pre-Omicron variants) and model features from other published data, we were able to develop a ML model that successfully identified HCAbs with efficacy against Omicron variants, independent of our experimental biopanning workflow. This biopanning informed ML approach reduced the experimental screening burden by 78% to 90% for the Omicron BA.5 and Omicron BA.1 variants, respectively. The combined approach can be applied to other emerging viruses with pandemic potential to rapidly identify effective therapeutic antibodies against emerging variants.

Antibodies↗

Engineered Microorganisms for Enhanced Rare Earth Element Bio-mining and Separations (Final Technical Report)

Rare earth elements (REE) are critical ingredients of sustainable energy technologies, but their extraction from ore and separation from one another pose formidable challenges. To solve the challenge of REE supply, we used advanced genomics, high-throughput screening with synthetic REE minerals, and synthetic biology to engineer two sets of exotic microbes to (1) extract REE from ores, spent cracking catalysts, coal ash and electronic waste with high efficiency and selectivity, and (2) to purify REE into single element batches, all under benign conditions without the need of harsh solvents and high temperatures. This work integrated our expertise in systems and synthetic biology (Buz Barstow); rare-earth geochemistry (Esteban Gazel) and mineral synthesis (Megan Holycross); and microsystems engineering (Mingming Wu) by first elucidating the set of rules that predict an organism’s phenotype and then applying them to solve this critical problem in sustainable energy. These new technologies could help to revitalize the US rare earth industry and provide a new source of these critical elements for future energy technologies. We have already had some big success in tech transfer. Two of our team members (postdoctoral fellow Alexa Schmitz and graduate student Sean Medin) were able to study the supply chain for REE in the United States, and identify an opportunity to commercialize our REE mineral-dissolution technology. Alexa and Sean recently founded REEgen, Inc., an REE biomining company. Dr. Schmitz was recently awarded a fellowship from the Activate Foundation to support the first two years of REEgen. Cornell showed its support for this technology and company, and Dr. Schmitz was awarded the Rising Women Innovator’s award. These two awards unlocked support from Cornell’s Praxis Incubator.

58 GEOSCIENCES↗

Convergent evolution of aerobic fermentation through divergent mechanisms acting on the same key glycolytic genes

Expression profiling by high throughput sequencing The model yeast Saccharomyces cerevisiae has evolved aerobic fermentation in part through a whole genome duplication and subsequent retention of glycolytic genes. To identify independent yeast lineages with a high glycolytic rate phenotype we developed an assay measuring extracellular acidification rates (ECAR) to evaluate the glycolytic rates across diverse yeast species. This assay identified a novel group of yeasts in the genus Saturnispora with rapid glycolytic rates. Through comparative approaches, we found that several glycolytic genes encoding hexokinases and enzymes in lower glycolysis had higher expression and modifications in promoter sequences in rapid ECAR species. Intriguingly, many of the upregulated genes are the same genes that are duplicated in S. cerevisiae. When the transcription factor required for their activation was deleted, the mutants had a slow glycolytic rate and more respiratory phenotype. This work shows how the aerobic fermentation phenotype has convergently evolved in Saturnispora through transcriptional rewiring. This divergent mechanism nevertheless impacts the same glycolytic genes, which suggests that there are evolutionary constraints on how aerobic fermentation can arise.

Horianopoulos, Linda C. [Department of Food Scienc↗

A Miniature Solid-State Spectrometer for Space Applications: Field Tests

A solid state infrared spectrometer has been developed under the Planetary Instrument Definition and Development Program PIDDP to implement a small rugged spectrometer principally for landed applications. The instrument uses the high index of refraction and waveguide properties of a silicon slab to achieve good spectral resolution and high throughput in a small instrument footprint (less than 25 cm). Light enters the silicon slab and is reflected off a grating (Ebert configuration), utilizing the silicon index of refraction to achieve high dispersion. An array of microthermopiles is used to measure the amplitude of the dispersed light. Input optics are typically utilized to focus light on the input aperture and a chopper is used to compensate system drift.

Smythe, W. D.↗

A hybrid neural architecture: Online attosecond x-ray characterization

The emergence of high-repetition-rate x-ray free-electron lasers (XFELs), such as SLAC’s LCLS-II, serves as our canonical example for autonomous controls that necessitate high-throughput diagnostics paired with streaming computational pipelines capable of single-shot analysis with extremely low latency. We present the deterministic characterization with an integrated parallelizable hybrid resolver architecture, a hybrid machine learning framework designed for fast, accurate analysis of XFEL diagnostics using angular streaking-based sinogram images. This architecture integrates convolutional neural networks and bidirectional long short-term memory models to denoise input, identify x-ray sub-spike features, and extract sub-spike relative delays with sub-30 attosecond temporal resolution. Deployed on low-latency hardware, it achieves over 10 kHz throughput with 168.3 μs inference latency, indicating scalability to 14 kHz with field-programmable gate array integration. By transforming regression tasks into classification problems and leveraging optimized error encoding, we achieve high precision with low-latency performance that is critical for real-time streaming event selection and experimental control feedback signals. This represents a key development in real-time control pipelines for next-generation autonomous science, generally, and high repetition-rate x-ray experiments in particular.

Accelerator Physics (physics.acc-ph)↗

Design, Implementation, and Verification of the Reliable Multicast Protocol

This document describes the Reliable Multicast Protocol (RMP) design, first implementation, and formal verification. RMP provides a totally ordered, reliable, atomic multicast service on top of an unreliable multicast datagram service. RMP is fully and symmetrically distributed so that no site bears an undue portion of the communications load. RMP provides a wide range of guarantees, from unreliable delivery to totally ordered delivery, to K-resilient, majority resilient, and totally resilient atomic delivery. These guarantees are selectable on a per message basis. RMP provides many communication options, including virtual synchrony, a publisher/subscriber model of message delivery, a client/server model of delivery, mutually exclusive handlers for messages, and mutually exclusive locks. It has been commonly believed that total ordering of messages can only be achieved at great performance expense. RMP discounts this. The first implementation of RMP has been shown to provide high throughput performance on Local Area Networks (LAN). For two or more destinations a single LAN, RMP provides higher throughput than any other protocol that does not use multicast or broadcast technology. The design, implementation, and verification activities of RMP have occurred concurrently. This has allowed the verification to maintain a high fidelity between design model, implementation model, and the verification model. The restrictions of implementation have influenced the design earlier than in normal sequential approaches. The protocol as a whole has matured smoother by the inclusion of several different perspectives into the product development.

Montgomery, Todd L.↗

Fast, High-Precision Readout Circuit for Detector Arrays

The GEO-CAPE mission described in NASA's Earth Science and Applications Decadal Survey requires high spatial, temporal, and spectral resolution measurements to monitor and characterize the rapidly changing chemistry of the troposphere over North and South Americas. High-frame-rate focal plane arrays (FPAs) with many pixels are needed to enable such measurements. A high-throughput digital detector readout integrated circuit (ROIC) that meets the GEO-CAPE FPA needs has been developed, fabricated, and tested. The ROIC is based on an innovative charge integrating, fast, high-precision analog-to-digital circuit that is built into each pixel. The 128×128-pixel ROIC digitizes all 16,384 pixels simultaneously at frame rates up to 16 kHz to provide a completely digital output on a single integrated circuit at an unprecedented rate of 262 million pixels per second. The approach eliminates the need for off focal plane electronics, greatly reducing volume, mass, and power compared to conventional FPA implementations. A focal plane based on this ROIC will require less than 2 W of power on a 1×1-cm integrated circuit. The ROIC is fabricated of silicon using CMOS technology. It is designed to be indium bump bonded to a variety of detector materials including silicon PIN diodes, indium antimonide (InSb), indium gallium arsenide (In- GaAs), and mercury cadmium telluride (HgCdTe) detector arrays to provide coverage over a broad spectral range in the infrared, visible, and ultraviolet spectral ranges.

Rider, David M.↗

Creating Benchmark Data for Artificial Intelligence and Machine Learning Space Biology Research

To identify an appropriate AI/ML approach for a specific problem, the best practice is to measure algorithm performance through the benchmarking process. A scientific benchmark consists of an AI-ready dataset and a reference implementation on a specific scientific question. The NASA Science Mission Directorate (SMD) has started the “Benchmark Initiative for AI/ML to create scientific benchmark datasets in three applications: 1) scientific benchmarking, which finds the best algorithm for a specific problem; 2) application benchmarking, which measures algorithm performance against a set of parameters; and 3) system benchmarking, which evaluates performance of hardware and software architecture. Currently, there are no standardized datasets available to benchmark AI/ML algorithms in the domain of space biology. In this work, we constructed two AI/ML-ready biological datasets from experiments in space-flown mice: cellular imaging and RNA-seq. First, radiation-exposed immune cells harbor DNA damage foci that can be fluorescently marked to visualize the amount of damage following exposure to ionizing radiation. However, such large datasets are difficult to analyze visually, due to imaging inconsistencies and human bias, and classical image processing approaches can fail on imaging artifacts. AI/ML are therefore exciting alternative, providing the speed of machines and the accuracy of humans. We have made this dataset available at https://registry.opendata.aws/bps_microscopy/. Second, high-throughput nucleic acid sequencing (DNA-seq, RNA-seq) has become widespread in biomedical research due to the growing availability and affordability of these assays. However, most sequencing datasets suffer from high dimensionality and low sample count. In this work, we used a generative adversarial network to synthesize a standardized, AI-ready, publicly available benchmark dataset for space biology RNA-seq data with sufficient space-flown and ground control mouse liver samples from NASA GeneLab. This dataset is available at https://registry.opendata.aws/bps_rnaseq/. These datasets are now fully open the Space Biology community to test their favorite AI/ML approaches.

James Casaletto↗

In-Situ Heat Rejection to the Martian Atmosphere

In order to provide in-situ heat rejection to the thin Martian atmosphere, approaches relying on forced convection and buoyancy flow are conceptualized. A convective radiator concept utilizing a fan to draw local atmosphere through an expanded metal foam heat exchanger panel is developed. To provide a pumped fluid loop interface, flow tubes are embedded in the heat exchanger panel and heat is transferred from the tubes to the foam via conduction and subsequently convectively to the environment. To forgo the use of a specialized high throughput fan, a concept utilizing a buoyant chimney tower to draw atmospheric flow through a low pressure drop heat exchanger is also considered. Both concepts may best align with moderate- to high-temperature heat loads that provide a significant delta temperature relative to the ambient atmosphere temperature. While eliminating dust accumulation on radiator surfaces, some type of serviceable filtration or screening may be required to prevent accumulation of dust inside the expanded metal foam heat exchanger for both concepts.

Heat Rejection↗

Causes and consequences of experimental variation in Nicotiana benthamiana transient expression

Infiltration of Agrobacterium tumefaciens into Nicotiana benthamiana has become a foundational technique in plant biology, enabling efficient delivery of transgenes in planta with technical ease, robust signal, and relatively high throughput. Despite transient expression’s prevalence in disciplines such as synthetic biology, little work has been done to describe and address the variability inherent in this system, a concern for experiments that rely on highly quantitative readouts. In a comprehensive analysis of N. benthamiana agroinfiltration experiments, we model sources of variability that affect transient expression. Our findings emphasize the need to validate normalization methods under the specific conditions of each study, as distinct normalization schemes do not always reduce variation either within or between experiments. Using a dataset of 1915 plants collected over three years, we develop a model of variation in N. benthamiana transient expression, using power analysis to determine the number of individual plants required for a given effect size. Drawing on our longitudinal data, these findings inform practical guidelines for minimizing variability through strategic experimental design and power analysis, providing a foundation for more robust and reproducible use of N. benthamiana in quantitative plant biology and synthetic biology applications.

Tang, Sophia N. [Joint BioEnergy Institute (JBEI),↗