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Nap1 and Kap114 co-chaperone H2A-H2B and facilitate targeted histone release in the nucleus
Core histones, synthesized and processed in the cytoplasm, must be chaperoned as they are transported into the nucleus for nucleosome assembly. The importin Kap114 transports H2A-H2B into the yeast nucleus, where RanGTP facilitates histone release. Kap114 and H2A-H2B also bind the histone chaperone Nap1, but how Nap1 and Kap114 cooperate in transport and nucleosome assembly remains unclear. Here, biochemical and structural analyses show that Kap114, H2A-H2B, and a Nap1 dimer (Nap12) associate in the absence and presence of RanGTP to form equimolar complexes. A previous study had shown that RanGTP reduces Kap114’s ability to chaperone H2A-H2B, but a new cryo-EM structure of the Nap12•H2A-H2B•Kap114•RanGTP complex explains how both Kap114 and Nap12 interact with H2A-H2B, restoring its chaperoning within the assembly while effectively depositing it into nucleosomes. Together, our results suggest that Kap114 and Nap12 provide a sheltered path that facilitates the transfer of H2A-H2B from Kap114 to Nap12, ultimately directing its specific deposition into nucleosomes.
Further investigation on the fusion of 6 Li with 209 Bi target at near-barrier energies
The complete and incomplete fusion cross sections for 6 Li+ 209 Bi were measured using the in-beam γ-ray method around the Coulomb barrier. The cross sections of (deuteron captured) incomplete fusion (ICF) products were re-quantified experimentally for this reaction system. Here, the results reveal that the ICF cross section is equivalent to that of complete fusion (CF) above the Coulomb barrier and dominant near or below the Coulomb barrier. A theoretical calculation based on the continuum discretized coupled channel (CDCC) method was performed for the aforementioned CF and ICF cross sections; the result is consistent with the experiments. The universal fusion function (UFF) was also compared with the measured CF cross section for different barrier parameters, demonstrating that the CF suppression factor is significantly influenced by the choice of potential, which can reflect both dynamic and static effects of breakup on the fusion process.
Turbulence simulations of drift-Alfvén wave effects on edge-localized modes and divertor target heat flux width
A series of BOUT++ turbulence simulations are performed for two Pre-Fusion Power Operation (PFPO-1,2) phases of the ITER Research plan proclaimed in 2019. Linear simulation results show that PFPO-1 is unstable to Peeling-ballooning modes (PB), while the PFPO-2 is unstable to the coupling of PB and Drift-Alfvén wave (DAW) instabilities. The linear results are qualitatively consistent with the dispersion relation of DAW. To study the influence of the DAW on the edge-localized mode (ELM) crash, the PFPO-2 is adopted in this section. Different from the grassy ELM in [Li et al 2022 Nucl. Fusion 62, 096030], nonlinear simulations show that the ELM size of PFPO-2 is almost one-third of the grassy ELM, representing a distinct small ELM. However, simulations then show that if the PB instability is removed, the fluctuation amplitude drops by an order of magnitude and the ELM crash disappears, which is in accord with the theory in [Xu et al 2010 Physical Review Letters, Vol. 105, 175005] and the results in [Li et al 2022 Nucl. Fusion 62, 096030], confirming that the PB instability is a necessary condition for an ELM crash. Furthermore, removing the DAW drive also suppresses ELM crashes, implying that PB instability is necessary but insufficient for PFPO-2 ELM and that DAW could amplify PB-driven turbulence. In addition, by integrating results of both PFPO phases by BOUT++ turbulence analysis with heat flux width (λ q ) and electron thermal diffusivity (χ e ), these simulations establish a predictive framework for heat flux width and its dominant mechanisms, thereby providing a comprehensive scheme for the prediction of the heat flux width. Moreover, simulations indicate that DAW driving can increase the transport coefficient by enhancing the turbulent transport, leading to a broadened heat flux width once the transport coefficient exceeds
A high-intensity, low-energy heavy ion source for a neutron target proof-of-principle experiment at LANSCE
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Calibration plan for the SBC 10-kg liquid argon detector with 100 eV target threshold
The Scintillating Bubble Chamber (SBC) Collaboration is designing a new generation of low background, noble liquid bubble chamber experiments with sub-keV nuclear recoil threshold. These experiments combine the electronic recoil blindness of a bubble chamber with the energy resolution of noble liquid scintillation, and maintain electron recoil discrimination at higher degrees of superheat (lower nuclear recoil thresholds) than Freon-based bubble chambers. A 10-kg liquid argon bubble chamber has the potential to set world leading limits on the dark matter nucleon cross-section for 𝒪(GeV/c 2 ) masses, and to perform a high statistics coherent elastic neutrino nuclear scattering measurement with reactor neutrinos. This work presents a detailed calibration plan to measure the detector response of these experiments, combining photoneutron scattering with two new techniques to induce sub-keV nuclear recoils: nuclear Thomson scattering and thermal neutron capture.
Integrase-On-Demand : bioprospecting integrases for targeted genomic insertion of genetic cargo
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Novel polymer fixed-target microfluidic platforms with an ultra-thin moisture barrier for serial macromolecular crystallography
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Study of SIDIS Unpolarized Cross Sections from a 3 He Target with the Solenoidal Large Intensity Device at JLab
In this paper we present a detailed impact study of semi-inclusive deep inelastic scattering unpolarized cross sections' measurements using the proposed SoLID apparatus at Jefferson Lab. This type of data, collected at large Bjorken $x_{bj}$, moderate values of $Q^2$ and small values of the transverse momentum of produced hadrons, $P_{hT}$, allows to study transverse momentum dependent (TMD) parton distribution and fragmentation functions in a still poorly explored region. We present the projected results for charged light mesons based on simulated data. For the azimuthal-angle integrated cross sections we adopt the TMD framework up to the next-to-next-to-next-to-leading-logarithmic (N3LL) accuracy, while a simpler TMD parton model is employed for the study of azimuthal angular dependencies.
Glauber-theory analysis of nuclear reactions on a 12 C target with variational Monte Carlo wave functions
The application of Glauber theory has been playing an increasingly important role with the study of unstable or exotic nuclei. Its adaptation to medium and high-energy nucleus-nucleus collisions is severely limited because one has to evaluate the matrix elements of multiple-scattering operators. The extraction of physical observables has been done using ‘approximate’ Glauber theory whose validity is hard to evaluate. Here, we perform a full calculation of the matrix elements using Monte Carlo integration and analyze the elastic differential cross sections and the total reaction cross sections for p+¹²C, ⁴,⁶He+¹²C, and ¹²C+¹²C collisions. We use the variational Monte Carlo wave functions for ⁴,⁶He and ¹²C obtained by using realistic two- and three-nucleon potentials. We demonstrate the performance of the Glauber-theory calculations by comparing with available experimental data. We further discuss the accuracy of the conventional approximate methods in the light of the cumulant expansion for Glauber’s phase-shift function.
Global Bayesian analysis of J/𝜓 photoproduction on proton and lead targets
We perform a global Bayesian analysis of diffractive J/𝜓 production in 𝛾 + 𝑝 and 𝛾 + Pb collisions using a color glass condensate (CGC) based calculation framework. As past calculations have shown that CGC-based models typically overpredict the J/𝜓 production in 𝛾 + Pb collisions at high center of mass energy, we address the question of whether it is possible to describe coherent and incoherent diffractive J/𝜓 data from 𝛾 + 𝑝 collisions at Hadron–Electron Ring Accelerator (HERA) and the LHC, and from 𝛾 + Pb collisions at the LHC simultaneously. Our results indicate that a simultaneous description of 𝛾 + 𝑝 and 𝛾 + Pb data is challenging, with results improving when an overall 𝐾-factor—scaling 𝛾 + 𝑝 and 𝛾 + Pb cross sections to absorb model uncertainties—is introduced.
Controlling topology through targeted composite symmetry manipulation in magnetic systems
The possibility of selecting magnetic space groups by orienting the magnetization direction or tuning magnetic orders offers a vast playground for engineering symmetry-protected topological phases in magnetic materials. In this work, we study how selective tuning of symmetry and magnetism can influence and control the resulting topology in a two-dimensional magnetic system, and we illustrate such a procedure in the ferromagnetic monolayer MnPSe 3 . Density functional theory calculations reveal a symmetry-protected accidental semimetallic (SM) phase for out-of-plane magnetization, which becomes an insulator when the magnetization is tilted in-plane, reaching band-gap values close to 100 meV. We identify an order-2 composite antiunitary symmetry and threefold rotational symmetry that induce the band crossing, and we classify the possible topological phases using symmetry analysis, which we support with tight-binding and k · p models. Breaking of inversion symmetry opens a gap in the SM phase, giving rise to a Chern insulator. We demonstrate this explicitly in the isostructural Janus compound Mn 2 P 2 S 3 Se 3 , which naturally exhibits Rashba spin-orbit coupling that breaks inversion symmetry. Our results map out the phase space of topological properties of ferromagnetic transition-metal phosphorus trichalcogenides, and they demonstrate the potential of the magnetization-dependent metal-to-insulator transition as a spin switch in integrated two-dimensional electronics.
Laser ion acceleration from concave targets by subpicosecond pulses
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Hitting the Thermal Target for Leptophilic Dark Matter at Future Lepton Colliders
We study future lepton collider prospects for testing predictive models of leptophilic dark matter (DM) candidates with a thermal origin. We calculate experimental milestones for testing the parameter space compatible with freeze-out and the associated collider signals at past, present, and future facilities. This analysis places new limits on such models by leveraging the utility of lepton colliders. At 𝑒+𝑒− machines, we make projections using precision 𝑍 -pole observables from 𝑒+𝑒−→ℓ+ℓ−+𝐸 signatures at large electron-positron collider and future projections for future circular collider (ee) in these channels. Additionally, a muon collider could also probe new thermal relic parameter space in this scenario via 𝜇+𝜇−→𝑋+𝐸 , where 𝑋 is any easily identifiable standard model object. Collectively, these processes can probe much of the parameter space for which DM direct annihilation to ℓ+ℓ− yields the observed relic density in Higgs-like models with mass-proportional couplings to charged leptons.
Target Inference Three-Dimensional Intercept-Angle Guidance With Deep Latent Reinforcement Meta-Learning
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FTTN: Feature-Targeted Testing for Numerical Properties of NVIDIA & AMD Matrix Accelerators
While NVIDIA has been the dominant provider of GPUs for HPC and ML, now AMD has several offerings of GPUs. This encourages programmers to try out AMD GPUs for new codes and also port existing codes over. Unfortunately, without understanding the floating-point differences between these GPU types, software development or porting can introduce bugs—and currently such an understanding is lacking. The magnitude of this open question becomes clear if one imagines the the number of floating-point precision choices (FP16, FP32, etc.), floating-point formats (standard floats, brain-float, etc.), and execution units available (elementary units, matrix/tensor cores, etc.) Questions such as rounding modes and subnormal support are also important. Most of these answers are unknown today or are hard to access. We provide the first testing-guided approach that answers a significant number of these questions. We also devise tests to reveal internal information (e.g., extra bits kept) to make sure that our findings are reliable. Many of our tests employ systematically generated random-programs, others apply fast-math flags and some involve fused multiplyadd. Especially for tensor/matrix cores, the tests have nontrivial logic that we present Our testing approach is reusable for the plethora of GPUs yet to be introduced. Our findings include up to 7 ulps of difference between NVIDIA and AMD for sin and cos at FP32 precision and 3 ulp at FP64. In our study of matrix cores (NVIDIA) and tensor cores (AMD), we have extensively characterized rounding modes (truncation versus round-to-nearest), the number of extra internal bits kept (whether 3 bits are kept or not), subnormal support for inputs and outputs across four different floating-point formats and across NVIDIA A100 and AMD MI250X GPUs. We believe that this wealth of data becoming available for the first time may help avoid significant porting bugs when migrating code across these platforms.
Sixteen multiple-amplifier sensing charge-coupled devices and characterization techniques targeting the next generation of astronomical instruments
We present a candidate sensor for future spectroscopic applications, such as a Stage-5 Spectroscopic Survey Experiment or the Habitable Worlds Observatory. This type of charge-coupled device (CCD) sensor features multiple in-line amplifiers at its output stage allowing multiple measurements of the same charge packet, either in each amplifier or in the different amplifiers. Recently, the operation of an eight-amplifier sensor has been experimentally demonstrated, and we present the operation of a 16-amplifier sensor. This new sensor enables a noise level of ∼1 erms− with a single sample per amplifier. In addition, it is shown that sub-electron noise can be achieved using multiple samples per amplifier. In addition to demonstrating the performance of the 16-amplifier sensor, we aim to create a framework for future analysis and performance optimization of this type of detectors. New models and techniques are presented to characterize specific parameters, which are absent in conventional CCDs and Skipper CCDs: charge transfer between amplifiers and independent and common noise in the amplifiers and their processing.