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At least 469 records · Page 26

Evolution of land mammal diversity in North America during the Cenozoic

The North American continental patterns of generic richness, extinction, and origination have been reexamined and analyzed in the context of alpha and beta species diversity. The major models of diversity are discussed as well as primary concepts and theories based on studies of living organisms. The adequacy of the fossil record is considered and patterns of genetic richness and species level diversity are outlined. Major shifts in mammalian community structures are reviewed and hypotheses are presented on diversity origin, regulation, and maintenance for the North American record. Results demonstrate a complex relationship between continental alpha and beta diversity characterized by marked changes through time and differences in patterns at each level. It is clear that both biotic and abiotic factors have strongly influenced the evolution of North American species diversity and that major restructuring occurred in Cenozoic mammalian communities.

Stucky, Richard K.↗

Noise in Josepson effect mixers and the RSJ model

Josephson effect mixers have previously been observed to display 'excess' noise both in experiments with point contacts and in numerical simulations using the resistively shunted junction (RSJ) model. This excess noise causes the mixer noise temperature to be a factor of typically 20-100 times the physical temperature of the device. Previously, this excess was ascribed to conversion from unwanted sidebands of the local oscillator and Josephson frequencies and their harmonics. Our numerical modeling of the RSJ equations has led to a new understanding of the excess noise, which is simply due to the intrinsic Josephson oscillations of the device. In addition, we have extended the modeling to include the previously ignored case of finite device capacitance (i.e. RSJ capacitance parameter beta(sub c) does not equal 0, which is more realistic for lithographically defined Josephson such as shunted tunnel junctions or SNS bridges. For some cases, this yields an improvement of a factor of two in noise temperature from the zero capacitance models. We will discuss the device parameters which optimize the mixer performance for frequencies approaching the characteristic frequency of the device, which is given by the Josephson frequency at the I(sub c)R(sub n) voltage (nu = 2eI(sub c)R(sub n)/h). These modeling results predict good conversion efficiency and a noise temperature within a factor of a few of the physical temperature. Experiments are in progress to determine the accuracy of this modeling using a waveguide mixer at 100 GHz with optimized, resistively shunted Nb tunnel junctions. If the modeling results are valid, they are particularly encouraging for mixers in the submillimeter regime, given the possibility of obtaining non-hysteretic Josephson devices with I(sub c)R(sub n) products in excess of a millivolt, using for instance, high-T(sub c) SNS bridges. We discuss the modifications to the classical RSJ model which are necessary in the quantum regime (h nu greater than kT), and conclude the Josephson mixers may attain noise temperatures less than ten times the quantum limit at high frequencies.

Schoelkopf, R.↗

Forced expression of stabilized c-Fos in dendritic cells reduces cytokine production and immune responses in vivo

Highlights: Black-Right-Pointing-Pointer Dendritic cells expressing stabilized c-Fos produced less inflammatory cytokines. Black-Right-Pointing-Pointer Dendritic cells expressing stabilized c-Fos activated T cells less efficiently. Black-Right-Pointing-Pointer Transgenic mice expressing stabilized c-Fos were resistant to EAE model. -- Abstract: Intracellular cyclic adenosine monophosphate (cAMP) suppresses innate immunity by inhibiting proinflammatory cytokine production by monocytic cells. We have shown that the transcription factor c-Fos is responsible for cAMP-mediated suppression of inflammatory cytokine production, and that c-Fos protein is stabilized by IKK{beta}-mediated phosphorylation. We found that S308 is one of the major phosphorylation sites, and that the S308D mutation prolongs c-Fos halflife. To investigate the role of stabilized c-Fos protein in dendritic cells (DCs) in vivo, we generated CD11c-promoter-deriven c-FosS308D transgenic mice. As expected, bone marrow-derived DCs (BMDCs) from these Tg mice produced smaller amounts of inflammatory cytokines, including TNF-{alpha}, IL-12, and IL-23, but higher levels of IL-10, in response to LPS, than those from wild-type (Wt) mice. When T cells were co-cultured with BMDCs from Tg mice, production of Th1 and Th17 cytokines was reduced, although T cell proliferation was not affected. Tg mice demonstrated more resistance to experimental autoimmune encephalomyelitis (EAE) than did Wt mice. These data suggest that c-Fos in DCs plays a suppressive role in certain innate and adaptive immune responses.

60 APPLIED LIFE SCIENCES↗

Collisionless shock waves in space - A very high beta structure

Measurements from six OGO-5 particle and field experiments are used to examine the structure of the earth's bow shock during a period of extremely high beta (the ratio of plasma thermal to magnetic energy density), as determined from simultaneous measurements of the upstream plasma on board the HEOS satellite. Even though the interplanetary field is nearly perpendicular to the shock normal, the shock is extremely turbulent. Large field increases are observed up to a factor of 20 above the upstream values. Ahead of these large enhancements, smaller magnetic effects accompanied by electrostatic noise, electron heating, and ion deflection are observed for several minutes. These observations suggest that a steady-state shock may not be able to form at very high beta. Further, they show that while the magnetic energy density may be relatively unimportant in the upstream flow, it can become very significant within the shock structure, and hence the magnetic field should not be ignored in theoretical treatments of very high beta shocks.

Formisano, V.↗

Linear properties of energetic particle driven geodesic acoustic mode

Linear properties of energetic particle driven geodesic acoustic mode (EGAM) in the large helical device plasmas are investigated using a hybrid simulation code for a magnetohydrodynamics fluid interacting with energetic particles. It is found that the EGAM is a global mode with the spatially uniform oscillation frequency despite the spatial variation of the local geodesic acoustic mode frequency. The poloidal mode numbers of poloidal velocity fluctuation, plasma density fluctuation, and magnetic fluctuation are m = 0, 1, and 2, respectively. Oscillation frequency, linear growth rate, and spatial width of EGAM are compared for different physics conditions. The EGAM frequency is proportional to the square root of the plasma temperature. The frequency is lower for higher energetic particle {beta} value. The mode spatial width is larger for larger spatial width of the energetic particle distribution and for the reversed shear safety-factor profile than the normal shear profile. It is also found that the EGAM propagates radially outward in the linearly growing phase, and the propagation speed is slower for the spatially broadened modes.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Size effects in the thermal conductivity of gallium oxide (β-Ga{sub 2}O{sub 3}) films grown via open-atmosphere annealing of gallium nitride

Gallium nitride (GaN) is a widely used semiconductor for high frequency and high power devices due to of its unique electrical properties: a wide band gap, high breakdown field, and high electron mobility. However, thermal management has become a limiting factor regarding efficiency, lifetime, and advancement of GaN devices and GaN-based applications. In this work, we study the thermal conductivity of beta-phase gallium oxide (β-Ga{sub 2}O{sub 3}) thin films, a component of typical gate oxides used in such devices. We use time domain thermoreflectance to measure the thermal conductivity of a variety of polycrystalline β-Ga{sub 2}O{sub 3} films of different thicknesses grown via open atmosphere annealing of the surfaces of GaN films on sapphire substrates. We show that the measured effective thermal conductivity of these β-Ga{sub 2}O{sub 3} films can span 1.5 orders of magnitude, increasing with an increased film thickness, which is indicative of the relatively large intrinsic thermal conductivity of the β-Ga{sub 2}O{sub 3} grown via this technique (8.8 ± 3.4 W m{sup −1} K{sup −1}) and large mean free paths compared to typical gate dielectrics commonly used in GaN device contacts. By conducting time domain thermoreflectance (TDTR) measurements with different metal transducers (Al, Au, and Au with a Ti wetting layer), we attribute this variation in effective thermal conductivity to a combination of size effects in the β-Ga{sub 2}O{sub 3} film resulting from phonon scattering at the β-Ga{sub 2}O{sub 3}/GaN interface and thermal transport across the β-Ga{sub 2}O{sub 3}/GaN interface. The measured thermal properties of open atmosphere-grown β-Ga{sub 2}O{sub 3} and its interface with GaN set the stage for thermal engineering of gate contacts in high frequency GaN-based devices.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

Radiation effects on beta 10.6 of pure and europium doped KCl

Changes in the optical absorption coefficient as a result of X-ray and electron bombardment of pure KCl (monocrystalline and polycrystalline), and divalent europium doped polycrystalline KCl were determined. The optical absorption coefficients were measured by a constant heat flow calorimetric method. Both 300 KV X-irradiation and 2 MeV electron irradiation produced significant increases in beta 10.6, measured at room temperature. The X-irradiation of pure moncrystalline KCl increased beta 10.6 by 0.005/cm for a 113 MR dose. For an equivalent dose, 2 MeV electrons were found less efficient in changing beta 10.6. However, electron irradiation of pure and Eu-doped polycrystalline KCl produced marked increases in adsorption. Beta increased to over 0.25/cm in Eu-doped material for a 30 x 10 to the 14th power electrons/sq cm dose, a factor of 20 increase over unirradiated material. Moreover, bleaching the electron irradiated doped KCl with 649 m light produced and additional factor of 1.5 increase. These findings will be discussed in light of known defect-center properties in KCl.

Grimes, H. H.↗

GLOBAL GENERAL RELATIVISTIC MAGNETOHYDRODYNAMIC SIMULATIONS OF BLACK HOLE ACCRETION FLOWS: A CONVERGENCE STUDY

Global, general relativistic magnetohydrodynamic (GRMHD) simulations of non-radiative, magnetized disks are widely used to model accreting black holes. We have performed a convergence study of GRMHD models computed with HARM3D. The models span a factor of four in linear resolution, from 96 Multiplication-Sign 96 Multiplication-Sign 64 to 384 Multiplication-Sign 384 Multiplication-Sign 256. We consider three diagnostics of convergence: (1) dimensionless shell-averaged quantities such as plasma {beta}; (2) the azimuthal correlation length of fluid variables; and (3) synthetic spectra of the source including synchrotron emission, absorption, and Compton scattering. Shell-averaged temperature is, except for the lowest resolution run, nearly independent of resolution; shell-averaged plasma {beta} decreases steadily with resolution but shows signs of convergence. The azimuthal correlation lengths of density, internal energy, and temperature decrease steadily with resolution but show signs of convergence. In contrast, the azimuthal correlation length of magnetic field decreases nearly linearly with grid size. We argue by analogy with local models, however, that convergence should be achieved with another factor of two in resolution. Synthetic spectra are, except for the lowest resolution run, nearly independent of resolution. The convergence behavior is consistent with that of higher physical resolution local model ({sup s}hearing box{sup )} calculations and with the recent non-relativistic global convergence studies of Hawley et al.

79 ASTRONOMY AND ASTROPHYSICS↗

Factors enhancing Agrobacterium tumefaciens-mediated gene transfer in peanut (Arachis hypogaea L.)

Parameters enhancing Agrobacterium-mediated transfer of foreign genes to peanut (Arachis hypogaea L.) cells were investigated. An intron-containing beta-glucuronidase uidA (gusA) gene under the transcriptional control of CaMV 35S promoter served as a reporter. Transformation frequency was evaluated by scoring the number of sectors expressing GUS activity on leaf and epicotyl explants. The 'Valencia Select' market type cv. New Mexico was more amenable to Agrobacterium transformation than the 'runner' market type cultivars tested (Florunner, Georgia Runner, Sunrunner, or South Runner). The disarmed Agrobacterium tumefaciens strain EHA101 was superior in facilitating the transfer of uidA gene to peanut cells compared to the disarmed strain C58. Rinsing of explants in half-strength Murashige-Skoog (MS) media prior to infection by Agrobacterium significantly increased the transformation efficiency. The use of cocultivation media containing high auxin [1.0 or 2.5 mg/l (4.53 micromolar or 11.31 micromolar) 2,4-D] and low cytokinin [0.25 or 0.5 mg/l (1.0 micromolar or 2.0 micromolar) BA] promoted higher transformation than either hormone-free or thidiazuron-containing medium. The polarity of the epicotyl during cocultivation was important; explants incubated in an inverted (vertically) manner followed by a vertically upright position resulted in improved transformation and shoot regeneration frequencies. Preculture of explants in MS basal medium or with 2.5 mg thidiazuron per l prior to infection drastically decreased the number of transformed zones. The optimized protocol was used to obtain transient transformation frequencies ranging from 12% to 36% for leaf explants, 15% to 42% for epicotyls. Initial evidence of transformation was obtained by polymerase chain reaction and subsequently confirmed by Southern analysis of regenerated plants.

NASA Discipline Life Support Systems↗

Selected Topics on Nuclear Structure in Electroweak Processes

We study electroweak processes in complex nuclei within the framework of self-consistent mean field theories including pairing and RPA correlations. We review the adiabatic time dependent Hartree-Fock (HF) theory and its ability to simultaneously handle large and small amplitude modes. We apply the formalism to the study of single and double beta decay as normal modes of the system, allowing for collective deformation, using Skyrme density-dependent two-body interactions. We also apply the formalism to the study of parity-violating electron scattering. We highlight nuclear structure issues that are crucial for the correct analysis of these processes, namely neutron densities and spectroscopic factors, whose proper knowledge and interpretation in stable nuclei is required to get reliable predictions on exotic nuclei.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Comprehensive proteomics analysis of stressed human islets identifies GDF15 as a target for type 1 diabetes intervention

Type 1 diabetes results from the progressive loss of beta cells, a process propagated by pro-inflammatory cytokine signaling that disrupts the balance between the expression of pro- and anti-apoptotic proteins. To identify such proteins, we performed comprehensive proteomics of human pancreatic islets treated with interleukin-1ß and interferon-?, leading to the identification of 11,325 proteins, of which 387 were significantly regulated by treatment. We then tested the function of growth/differentiation factor 15 (GDF15), which was repressed by the cytokine treatment. We found that GDF15 translation was blocked during inflammation, while the addition of exogenous GDF15 inhibited interleukin-1ß/interferon-?-induced apoptosis of human islets and a human beta-cell line. Furthermore, administration of GDF15 significantly decreased insulitis in NOD mice. Our approach provides a unique resource for the identification of the human islet proteins regulated by cytokines and was effective in discovering a potential target for type 1 diabetes therapy.

Nakayasu, Ernesto S.↗

Exploration of multi-fold symmetry element-loaded superconducting radio frequency structure for reliable acceleration of low- & medium-beta ion species

Reliable acceleration of low- to medium-beta proton or heavy ion species is needed for future high-current superconducting radio frequency (SRF) accelerators. Due to the high-Q nature of an SRF resonator, it is sensitive to many factors such as electron loading (from either the accelerated beam or from parasitic field emitted electrons), mechanical vibration, and liquid helium bath pressure fluctuation etc. To increase the stability against those factors, a mechanically strong and stable RF structure is desirable. Guided by this consideration, multi-fold symmetry element-loaded SRF structures (MFSEL), cylindrical tanks with multiple (n>=3) rod-shaped radial elements, are being explored. The top goal of its optimization is to improve mechanical stability. A natural consequence of this structure is a lowered ratio of the peak surface electromagnetic field to the acceleration gradient as compared to the traditional spoke cavity. A disadvantage of this new structure is an increased size for a fixed resonant frequency and optimal beta. This paper describes the optimization of the electro-magnetic (EM) design and preliminary mechanical analysis for such structures.

43 PARTICLE ACCELERATORS↗

Reactor production of promethium-147

In this paper, we describe the 147 Pm production yields and level of impurities from several targets that consisted of milligram quantities of highly enriched 146 Nd oxide irradiated at the High Flux Isotope Reactor (HFIR) at Oak Ridge National Laboratory for durations ranging from 24 to180 h. A comparison between theoretical and experimental data are also presented, and attempts were made to empirically evaluate the neutron capture cross-sections of 41.3-d 148m Pm and 5.4-d 148g Pm. For a one-cycle irradiation (~24 days), 147 Pm yield reaches a maximum value of 101.8 MBq/mg (2.75 mCi/mg) at 60 days after the end of bombardment. Because of large neutron capture cross-sections of 147 Pm, the yield of 147 Pm does not significantly increase with longer irradiation. Our estimates of the thermal neutron capture cross-section and resonance integral for 146 Nd at 1.48 ± 0.05 b and 2.56 ± 0.25 b, respectively, were consistent with the reported values. The effective neutron capture cross-section of 147 Pm to 148m Pm was 53.3 ± 2.7 b - a factor of 2 lower than the 98.7 ± 6.5 b calculated from reported cross-sections. The measured σ eff to the ground state (5.37-d 148g Pm) was 82.0 ± 4.1 b; ~34 % lower than the value of 139 ± 0 b calculated from reported cross-sections. In this work, we also describe the development of a chemical process based on extraction and ion-exchange chromatography for separation of 147 Pm from milligram quantities of 146 Nd and other impurities. Sequential separation of Pm from the Nd target and from other radioisotopic impurities ( 153 Gd and 154&155 Eu, 192 Ir, and 60 Co) was achieved using a LN extraction resin in HCl media followed by further purification of Pm from 60 Co and 192 Ir using a low cross-linking cation exchange resin. Based on these data, we estimated that two rounds of purification under our experimental conditions can provide a mass separation factor of > 104 between Pm and Nd. Our data indicate that curie quantities of 147 Pm with suitable chemical and radioisotopic purity for applications in beta voltaic batteries can be produced by irradiating gram quantities of highly enriched 146 Nd in the flux trap of HFIR for one cycle.

11 NUCLEAR FUEL CYCLE AND FUEL MATERIALS↗

Structural Insight inot the low Affinity Between Thermotoga maritima CheA and CheB Compared to their Escherichia coli/Salmonella typhimurium Counterparts

CheA-mediated CheB phosphorylation and the subsequent CheB-mediated demethylation of the chemoreceptors are important steps required for the bacterial chemotactic adaptation response. Although Escherichia coli CheB has been reported to interact with CheA competitively against CheY, we have observed that Thermotoga maritima CheB has no detectable CheA-binding. By determining the CheY-like domain crystal structure of T. maritima CheB, and comparing against the T. maritima CheY and Salmonella typhimurium CheB structures, we propose that the two consecutive glutamates in the {beta}4/{alpha}4 loop of T. maritima CheB that is absent in T. maritima CheY and in E. coli/S. typhimurium CheB may be one factor contributing to the low CheA affinity.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Molecular Design Principles Underlying beta-strand Swapping in the Adhesive Dimerization of Cadherins

Cell adhesion by classical cadherins is mediated by dimerization of their EC1 domains through the 'swapping' of N-terminal {beta}-strands. We use molecular simulations, measurements of binding affinities and X-ray crystallography to provide a detailed picture of the structural and energetic factors that control the adhesive dimerization of cadherins. We show that strand swapping in EC1 is driven by conformational strain in cadherin monomers that arises from the anchoring of their short N-terminal strand at one end by the conserved Trp2 and at the other by ligation to Ca{sup 2+} ions. We also demonstrate that a conserved proline-proline motif functions to avoid the formation of an overly tight interface where affinity differences between different cadherins, crucial at the cellular level, are lost. We use these findings to design site-directed mutations that transform a monomeric EC2-EC3 domain cadherin construct into a strand-swapped dimer.

59 BASIC BIOLOGICAL SCIENCES↗

Individual and Simultaneous Imaging of ⁹⁹mTc and ¹⁷⁷Lu With a Preclinical Broad Energy-Spectrum CZT-Based SPECT

Radiopharmaceutical therapy has demonstrated a high efficacy in the treatment of various tumor types. One of the radionuclides already used in the clinic is 177Lu, a beta emitter that also emits several photons imageable with SPECT. Quantitative imaging of 177Lu is critical for developing new radiopharmaceuticals. Energy resolution is an important factor when imaging multiple photon emissions. Solid-state detectors offer a superior performance over scintillators, that are commonly used in commercially-available preclinical SPECT scanners. This study demonstrates the feasibility of 99m Tc and 177Lu quantitative imaging in mouse phantoms, individually and simultaneously, with a SPECT prototype built with four CdZnTe (CZT) detector heads and a custom-designed and energy-optimized parallel-hole tungsten collimator. With a custom implementation of the one-step late (OSL) image reconstruction algorithm, the system is capable of imaging energies from ~70 keV to 250 keV. Above 250 keV, images were significantly affected by septal penetration, consistent with the collimator design. A recovery coefficient within 25% was obtained for activities as low as 2 kBq/mL for 99m Tc and 45% for 177Lu. Compared to a commercial NaI-based preclinical SPECT (VECTor4/CT), our prototype showed a superior energy resolution (< 5% at 140 keV), a similar uniformity with a high-compact design.

Encarnação, Pedro M C C↗

Flux Ropes, Turbulence, and Collisionless Perpendicular Shock Waves: High Plasma Beta Case

With the onset of solar maximum and the expected increased prevalence of interplanetary shock waves, Parker Solar Probe is likely to observe numerous shocks in the next few years. An outstanding question that has received surprisingly little attention has been how turbulence interacts with collisionless shock waves. Turbulence in the supersonic solar wind is described frequently as a superposition of a majority 2D and a minority slab component. Here we formulate a collisional perpendicular shock-turbulence transmission problem in a way that enables investigation of the interaction and transmission of quasi-perpendicular fluctuations such as magnetic flux ropes/islands and vortices as well as entropy and acoustic modes in the large plasma beta regime. We focus on the transmission of an upstream spectrum of these modes, finding that the downstream spectral amplitude is typically increased significantly (a factor of 10 or more), and that the upstream spectral index of the inertial range, and indeed the general spectral shape, is unchanged for the downstream magnetic variance, kinetic energy, and density variance. A comparison of the theoretically predicted downstream magnetic variance, kinetic energy, and density variance spectra with those observed at 1, 5, and 84 au by Wind, Ulysses, and Voyager 2 shows excellent agreement. The overall theoretically predicted characteristics of the transmission of turbulence across shocks observed in the solar wind appear to be largely consistent with recent observational studies by Pitňa et al. and Borovsky.

79 ASTRONOMY AND ASTROPHYSICS↗

Theoretical foundations for quantitative paleogenetics. III - The molecular divergence of nucleic acids and proteins for the case of genetic events of unequal probability

Theoretical equations are derived for molecular divergence with respect to gene and protein structure in the presence of genetic events with unequal probabilities: amino acid and base compositions, the frequencies of nucleotide replacements, the usage of degenerate codons, the distribution of fixed base replacements within codons and the distribution of fixed base replacements among codons. Results are presented in the form of tables relating the probabilities of given numbers of codon base changes with respect to the original codon for the alpha hemoglobin, beta hemoglobin, myoglobin, cytochrome c and parvalbumin group gene families. Application of the calculations to the rabbit alpha and beta hemoglobin mRNAs and proteins indicates that the genes are separated by about 425 fixed based replacements distributed over 114 codon sites, which is a factor of two greater than previous estimates. The theoretical results also suggest that many more base replacements are required to effect a given gene or protein structural change than previously believed.

Holmquist, R.↗