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At least 469 records · Page 26

Top-down proteomics

Proteoforms arising from posttranslational modifications, genetic polymorphisms, and RNA splice variants, play a pivotal role as the key drivers in biology. Thus, a comprehensive understanding of proteoforms is essential for unraveling the intricacies of biological systems and bridging the gap between genotype and phenotype. By analyzing whole proteins without digestion, top-down proteomics (TDP) provides a holistic view of the proteome and presents a next-generation approach for deciphering protein function, uncovering disease mechanisms, and advancing precision medicine. This Primer embarks on a journey into the world of TDP by encapsulating its historical context, underlying principles, recent advances, and an outlook on the future of TDP. The experimental section navigates instrumentation, sample preparation, intact protein separation, tandem mass spectrometry techniques, and data collection. Results decipher raw data, visualize intact protein spectra, unravel data analysis, and explain proteoform identification, characterization, and quantitation, as well as statistical analysis. Various applications of TDP spanning the human proteoform project, biomedical, biopharmaceutical, and clinical applications are described. These are complemented by discussions on measurement reproducibility, limitations, and a forward-looking perspective outlining uncharted waters where the field can advance, and potential exciting future applications of TDP.

Roberts, David S.↗

On Alfvénic turbulence of solar wind streams observed by Solar Orbiter during March 2022 perihelion and their source regions

It has been recently accepted that the standard classification of the solar wind solely according to flow speed is outdated, and particular interest has been devoted to the study of the origin and evolution of so-called Alfvénic slow solar wind streams and to what extent such streams resemble or differ from fast wind. In March 2022, Solar Orbiter completed its first nominal phase perihelion passage. During this interval, it observed several Alfvénic streams, allowing for characterization of fluctuations in three slow wind intervals (AS1-AS3) and comparison with a fast wind stream (F) at almost the same heliocentric distance. This work makes use of Solar Orbiter plasma parameters from the Solar Wind Analyzer (SWA) and magnetic field measurements from the magnetometer (MAG). The magnetic connectivity to the solar sources of selected solar wind intervals was reconstructed using a ballistic extrapolation based on measured solar wind speed down to the (spherical) source surface at 2.5 R s below which a potential field extrapolation was used to map back to the Sun. The source regions were identified using SDO/AIA observations. A spectral analysis of in situ measured magnetic field and velocity fluctuations was performed to characterize correlations, Alfvénicity, normalized cross-helicity, and residual energy in the frequency domain as well as intermittency of the fluctuations and spectral energy transfer rate estimated via mixed third-order moments. A machine learning technique was used to separate proton core, proton beam, and alpha particles and to study v − b correlations for the different ion populations in order to evaluate the role played by each population in determining the Alfvénic content of solar wind fluctuations. The comparison between fast wind and Alfvénic slow wind intervals highlights the differences between the two solar wind regimes: The fast wind is characterized by larger amplitude fluctuations, and magnetic and velocity fluctuations are closer to equipartition of energy. In fact the Alfvénic slow wind streams appear to be on a spectrum of wind types, with AS1, originating from open field lines neighboring active regions and displaying similarities with the fast wind in terms of fluctuation amplitude and turbulence characteristics, but not with respect to the alpha particles and proton beams. The other two slow streams differed both in their sources as well as plasma characteristics, with AS2 coming from the expansion of a narrow coronal hole corridor and AS3 from a region straddling a pseudostreamer. The latter displayed the coldest and highest density but the slowest stream with the smallest fluctuation amplitude and greatest magnetic energy excess. It also showed the largest scatter in proton beam speeds and the greatest difference in speed between proton beam and alpha particles. This study shows how the old fast–slow solar wind dichotomy, already called into question by the observations of slower Alfvénic solar wind streams, should further be refined, as the Alfvénic slow wind, originating in different solar wind regions, show significant differences in density, temperature, and proton and alpha-particle properties in the inner heliosphere. The observations presented here provide the starting point for a better understanding of the origin and evolution of different solar wind streams as well as the evolving turbulence contained within.

magnetohydrodynamics (MHD)↗

Probing specific ion effects at air-aqueous dibutyl phosphate interfaces using vibrational sum frequency generation spectroscopy

Molecular properties at air–liquid and liquid–liquid interface hold the key to many processes involving molecular transport across phase boundaries from aerosol formation to carbon cycling and material separation using solvent extraction techniques. Using dibutyl phosphate (DBP) as a representative for partially aqueous soluble surfactants, the specific ion effect (SIE) of the Hofmeister series cations Cs + , Na + , Li + , and Mg 2+ on the partition and interaction between surfactant molecules and water molecules in the air–aqueous interface are investigated using vibrational sum frequency generation spectroscopy and surface tension measurements. In the presence of 1 mM and 1M bulk aqueous phase ionic strength salt concentrations, fundamental qualitative relationships are observed for the salting out of DBP relative to bulk aqueous phase nitrate salt concentrations and the specific cations species. At 1 mM ionic strength, the interfacial charge and hence the interfacial potential modulates the electrostatic interactions; in particular, the counter cations partially screen the negatively charged interface induced by the DBP in a direct Hofmeister order. At 1M ionic strength, the electric field at the interface or interfacial potential is effectively neutralized, and the counter cations promote the partitioning of DBP to the interface depending on their specific interaction with the DBP head group and metal ion hydration properties. The present results lay a foundation to study SIEs of heavier metals on hydrophobic-aqueous DBP interfaces.

Louie, Christina [Washington State University, Pul↗

Gallium oxide (Ga2O3) as a radiation detector distinguishing neutrons and gammas

Gallium oxide (Ga2O3) is a promising ultrawide bandgap semiconductor for radiation detection with the potential of integrating electronic and scintillation functions within a single crystal device. This study establishes the scintillation response of β-Ga2O3 gamma irradiation from yttrium-88 (88Y). Then, californium-252 (252Cf) is used as a spontaneous fission source of mixed neutron and gamma radiation field to measure scintillation signals. Pulse shape discrimination and constant fraction discrimination techniques were used to separate neutron and gamma interaction events. Further investigation indicates that the prompt temporal responses of β-Ga2O3 for gammas and neutrons may enable discrimination of the two by prompt pulse fitting methods, focused around the initial peak. For gamma irradiation, we observed a rise time (τr) of 2.1 ns, decay time (τd) of 9.5 ns, and a full width at half maximum (FWHM) of 6.2 ns. For neutrons, it showed a τr of 2.3 ns, a τd of 12.1 ns, 9.4 ns FWHM, and reduced peak intensity. A diamond detector exhibited a more symmetrical τr and τd for both gamma and neutron signals and therefore is less effective at discriminating between the two by this method. This draws attention to β-Ga2O3’s ability to distinguish neutron and gamma particles. These findings showcase Ga2O3’s potential as a next-generation semiconductor for applications in nuclear safety and medical imaging, where precise discrimination between neutron and gamma interactions is essential.

Valdes, D. J. (ORCID:0000000304373720)↗

Observation of d(t,n) α Neutrons Following d(d,p)t Reactions in a Deuterium Gas Cell: An Attempt to Repeat Ruhlig’s 1938 Observation of Secondary Reactions

In order to benchmark methods used to calculate reaction-in-flight fusion reactions in inertial confinement fusion and address issues related to the first claimed observation of d(t,n)α reactions in 1938, secondary d(t,n)α reactions have been observed following d(d,p)t reactions in deuterium gas. A pulsed 200-nA, 2.2-MeV deuterium beam from the Triangle Universities Nuclear Laboratory FN tandem accelerator was injected into a cylindrical multiatmosphere deuterium gas target. The incident beam traversed along the target cylinder’s 3-cm symmetry axis after its passage through a Havar entrance foil. Two different Havar foil thicknesses were used to obtain 1.5- and 0.6-MeV deuteron beams entering the deuterium cell. The cylinder’s radius was 2 cm to allow for d(d,p)t tritons emitted perpendicular to the beam to range out in the deuterium gas. The neutron emission from the cell was observed via its time of flight to a liquid scintillator placed at various angles to the beam direction, at a distance of 243 cm. Pulse-shape-discrimination techniques were used to separate neutron and gamma-ray signals seen in the liquid scintillator. The observed probability of ~2 × 10 –4 for inducing secondary d(t,n)α fusion in the gas cell per d(d,p)t reaction is consistent with theoretical expectations.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

The Role of Ocean Circulation in Southern Ocean Heat Uptake, Transport, and Storage Response to Quadrupled CO 2

In response to quadrupled CO 2 , the Southern Ocean primarily uptakes excess heat around 60°S, which is then redistributed by the northward ocean heat transport (OHT) and mostly stored in the ocean or released back to the atmosphere around 45°S. However, the relative roles of mean ocean circulation and ocean circulation change in the uptake and redistribution of heat in the Southern Ocean remain controversial. Here, in this study, a set of climate model experiments embedded with a novel partial coupling technique are used to separate the roles of mean ocean circulation (passive component) and ocean circulation change (active component). For the ocean heat uptake (OHU) response, the mean ocean circulation and ocean circulation change are of equal importance. The OHT response south of 50°S is mainly determined by mean ocean circulation, while the ocean circulation change generates an anomalous southward OHT north of 50°S. A heat budget analysis finds that the divergence of passive OHT acts to balance the passive surface heat gain to the south of ~50°S, while the convergence of active OHT acts to balance the active surface heat loss to the north of ~50°S. Intriguingly, all the increase in ocean heat storage (OHS) is attributable to the passive component, with the ocean circulation change playing almost no role. In the Southern Ocean, both the active and the passive ocean heat transports are overcompensated by the reverse atmospheric heat transport via the Bjerknes compensation.

54 ENVIRONMENTAL SCIENCES↗

R-Matrix Analysis of the Neutron-Induced Cross Sections on 143 Nd Measured at LANSC [Slides]

An established use of R-Matrix codes is being implemented at LANSCE. There are unique features accessible with detectors at LANSCE that can be used to perform more complete R-Matrix analysis. Further, Spin separation is a powerful technique that can be applied in DANCE measurements. Additionally, a unique method to measure transmission with DICER is being undertaken. Transmission and capture data were analyzed in this work. The study can be extended to other channels. The results of the 143 Nd data are presented in this work. New resonances found in this work: 21 compared to ENDF/B-VIII.0 and JEFF-3.3, and 24 compared to JENDL-5. Wrong spin assignment in 23 resonances in ENDF/B-VIII.0, 25 in JEFF-3.3 and 26 in JENDL-5. The 143 Nd and 147,149 Sm have been analyzed. Exciting future for new measurements and analysis!

97 MATHEMATICS AND COMPUTING↗

Scalable High-Throughput Open-Air Spray-Plasma Manufacturing of Solid-State Lithium Batteries

This final technical report presents a comprehensive analysis of a novel plasma-based in-line manufacturing process for large-area, LLZO-separator-based, solid-state lithium-ion batteries, demonstrating both technical feasibility and economic advantages over conventional vacuum deposition methods. The technical validation shows that spray-deposition with plasma curing achieves comparable electrode and separator quality to vacuum techniques while enabling continuous processing of components and industrially relevant film areas. Critical material interfaces maintain low porosity and high ionic conductivities, which confirm the process's ability to overcome the primary limitation of conventional methods - the trade-off between deposition quality and economically-viable production scale.

25 ENERGY STORAGE↗

High-Transmission Neutron Optical Devices Utilizing Micro-Machined Structures

Neutrons are a powerful probe in material science with unique penetrating abilities. A major challenge stems from the fact that neutron optical devices are limited to refractive indices on the order of n≈1±10−5. By exploiting advances in precision manufacturing, we designed and constructed micro-meter period triangular grating with a high-aspect ratio of 14.3. The manufacturing quality is demonstrated with white-light interferometric data and microscope imaging. Neutron-scattering experiment results are presented, showing agreement with refraction modelling. The capabilities of neutron Fresnel prisms and lenses based on this design are contrasted with existing neutron focusing techniques, and the path separation of a prism-based neutron interferometer is estimated.

Kapahi, Connor (ORCID:0000000160516859)↗

Tungsten thermal neutron dosimeter

Tungsten-185 activity, which is produced by neutron activation of tungsten-184, determines thermal neutron flux. Radiochemical separation methods and counting techniques for irradiated tungsten provide accurate determination of the radiation exposure.

Ball, L. L.↗

Superconducting resonators and devices.

The high-frequency properties of superconductors are reviewed, including the London, Pippard, and Mattis-Bardeen surface impedance, and techniques for measuring and separating losses are discussed. Residual resistance mechanisms are described and evaluated, including high field effects. The state of knowledge is shown to be adequate for engineering design. Applications of superconducting resonators and lines to filters, tuners, oscillators, amplifiers and mixers, transmission lines, antennas, optical and radiation detection, and materials research are discussed.

Hartwig, W. H.↗

Method and apparatus for a single channel digital communications system

A method and apparatus are described for synchronizing a received PCM communications signal without requiring a separate synchronizing channel. The technique provides digital correlation of the received signal with a reference signal, first with its unmodulated subcarrier and then with a bit sync code modulated subcarrier, where the code sequence length is equal in duration to each data bit.

Couvillon, L. A., Jr.↗

Some analyses of the chemistry and diffusion of SST exhaust materials during phase 3 of the wake period

In the generally stably stratified lower stratosphere, SST exhaust plumes could spend a significant length of time in a relatively undispersed state. This effort has utilized invariant modeling techniques to simulate the separate and combined effects of atmospheric turbulence, turbulent diffusion, and chemical reactions of SST exhaust materials in the lower stratosphere. The primary results to date are: (1) The combination of relatively slow diffusive mixing and rapid chemical reactions during the Phase III wake period minimizes the effect of SST exhausts on O3 depletion by the so-called NOx catalytic cycle. While the SST-produced NO is substantially above background concentrations, it appears diffusive mixing of NO and O3 is simply too slow to produce the O3 depletions originally proposed. (2) The time required to dilute the SST exhaust plume may be a significant fraction of the total time these materials are resident in the lower stratosphere. If this is the case, then prior estimates of the environmental impact of these materials must be revised significantly downward.

Hilst, G. R.↗