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At least 487 records · Page 27

Study of Nonclassical Fields in Phase-Sensitive Reservoirs

We show that the reservoir influence can be modeled by an infinite array of beam splitters. The superposition of the input fields in the beam splitter is discussed with the convolution laws for their quasiprobabilities. We derive the Fokker-Planck equation for the cavity field coupled with a phase-sensitive reservoir using the convolution law. We also analyze the amplification in the phase-sensitive reservoir with use of the modified beam splitter model. We show the similarities and differences between the dissipation and amplification models. We show that a super-Poissonian input field cannot become sub-Poissonian by the phase-sensitive amplification.

Kim, Myung Shik↗

Optical amplifiers for coherent lidar

We examine application of optical amplification to coherent lidar for the case of a weak return signal (a number of quanta of the return optical field close to unity). We consider the option that has been explored to date, namely, incorporation of an optical amplifier operated in a linear manner located after reception of the signal and immediately prior to heterodyning and photodetection. We also consider alternative strategies where the coherent interaction, the nonlinear processes, and the amplification are not necessarily constrained to occur in the manner investigated to date. We include the complications that occur because of mechanisms that occur at the level of a few, or one, quantum excitation. Two factors combine in the work to date that limit the value of the approach. These are: (1) the weak signal tends to require operation of the amplifier in the linear regime where the important advantages of nonlinear optical processing are not accessed, (2) the linear optical amplifier has a -3dB noise figure (SN(out)/SN(in)) that necessarily degrades the signal. Some improvement is gained because the gain provided by the optical amplifier can be used to overcome losses in the heterodyned process and photodetection. The result, however, is that introduction of an optical amplifier in a well optimized coherent lidar system results in, at best, a modest improvement in signal to noise. Some improvement may also be realized on incorporating more optical components in a coherent lidar system for purely practical reasons. For example, more compact, lighter weight, components, more robust alignment, or more rapid processing may be gained. We further find that there remain a number of potentially valuable, but unexplored options offered both by the rapidly expanding base of optical technology and the recent investigation of novel nonlinear coherent interference phenomena occurring at the single quantum excitation level. Key findings are: (1) insertion of linear optical amplifiers in well optimized conventional lidar systems offers modest improvements, at best, (2) the practical advantages of optical amplifiers, especially fiber amplifiers, such as ease of alignment, compactness, efficiency, lightweight, etc., warrant further investigation for coherent lidar, (3) the possibility of more fully optical lidar systems should be explored, (4) advantages gained by use of coherent interference of optical fields at the level of one, or a few, signal quanta should be explored, (5) amplification without inversion, population trapping, and use of electromagnetic induced transparency warrant investigation in connection with coherent lidar, (6) these new findings are probably more applicable to earth related NASA work, although applications to deep space should not be excluded, and (7) our own work in the Ultrafast Laboratory at UAH along some of the above lines of investigation, may be useful.

Fork, Richard↗

The Implicit and Explicit alpha-mu Schemes

Artificial numerical dissipation is an important issue in large Reynolds number computations. In such computations, the artificial dissipation inherent in traditional numerical schemes can overwhelm the physical dissipation and yield inaccurate results on meshes of practical size. In the present work, the space-time conservation element and solution element method is used to construct new and accurate numerical schemes such that artificial numerical dissipation will not overwhelm physical dissipation. Specifically, these schemes have the property that numerical dissipation vanishes when the physical viscosity goes to zero. These new schemes therefore accurately model the physical dissipation even when it is extremely small. The method of space-time conservation element and solution element, currently under development, is a nontraditional numerical method for solving conservation laws. The method is developed on the basis of local and global flux conservation in a space-time domain, in which space and time are treated in a unified manner. Explicit solvers for model and fluid dynamic conservation laws have previously been investigated. In this paper, we introduce a new concept in the design of implicit schemes, and use it to construct two highly accurate solvers for a convection-diffusion equation. The two schemes become identical in the pure convection case, and in the pure diffusion case. The implicit schemes are applicable over the whole Reynolds number range, from purely diffusive equations to purely inviscid (convective) equations. The stability and consistency of the schemes are analyzed, and some numerical results are presented. It is shown that, in the inviscid case, the new schemes become explicit and their amplification factors are identical to those of the Leapfrog scheme. On the other hand, in the pure diffusion case, their principal amplification factor becomes the amplification factor of the Crank-Nicolson scheme. We also construct an explicit solver with the treatment of diffusion being based on that in the implicit solvers. The explicit solver has only a CFL stability limitation on the Courant number, yet it retains the second-order spatial accuracy of the implicit schemes.

Chang, Sin-Chung↗

Far-Infrared Hydrogen Lasers in the Peculiar Star MWC 349A

Far-infrared hydrogen recombination lines H15(alpha)(169.4 micrometers), H12(alpha)(88.8 micrometers), and H10(alpha)(52.5 micrometers) were detected in the peculiar luminous star MWC 349A from the Kuiper Airborne Observatory. Here it is shown that at least H15(alpha) is strongly amplified, with the probable amplification factor being greater than or about equal to 10(exp 3) and a brightness temperature that is greater than or about equal to 10(exp 7) kelvin. The other two lines also show signs of amplification, although to a lesser degree. Beyond H10(alpha) the amplification apparently vanishes. The newly detected amplified lines fall into the laser wavelength domain. These lasers, as well as the previously detected hydrogen masers may originate in the photoionized circumstellar disk of MWC 349A and constrain the disk's physics and structure.

Strelnitski, Vladimir↗

Implicit Space-Time Conservation Element and Solution Element Schemes

Artificial numerical dissipation is in important issue in large Reynolds number computations. In such computations, the artificial dissipation inherent in traditional numerical schemes can overwhelm the physical dissipation and yield inaccurate results on meshes of practical size. In the present work, the space-time conservation element and solution element method is used to construct new and accurate implicit numerical schemes such that artificial numerical dissipation will not overwhelm physical dissipation. Specifically, these schemes have the property that numerical dissipation vanishes when the physical viscosity goes to zero. These new schemes therefore accurately model the physical dissipation even when it is extremely small. The new schemes presented are two highly accurate implicit solvers for a convection-diffusion equation. The two schemes become identical in the pure convection case, and in the pure diffusion case. The implicit schemes are applicable over the whole Reynolds number range, from purely diffusive equations to convection-dominated equations with very small viscosity. The stability and consistency of the schemes are analysed, and some numerical results are presented. It is shown that, in the inviscid case, the new schemes become explicit and their amplification factors are identical to those of the Leapfrog scheme. On the other hand, in the pure diffusion case, their principal amplification factor becomes the amplification factor of the Crank-Nicolson scheme.

Chang, Sin-Chung↗

Welding arc length control system

The present invention is a welding arc length control system. The system includes, in its broadest aspects, a power source for providing welding current, a power amplification system, a motorized welding torch assembly connected to the power amplification system, a computer, and current pick up means. The computer is connected to the power amplification system for storing and processing arc weld current parameters and non-linear voltage-ampere characteristics. The current pick up means is connected to the power source and to the welding torch assembly for providing weld current data to the computer. Thus, the desired arc length is maintained as the welding current is varied during operation, maintaining consistent weld penetration.

Iceland, William F.↗

Discrimination of Spore-Forming Bacilli Using spoIVA

A method of discriminating between spore-forming and non-spore-forming bacteria is based on a combination of simultaneous sporulation-specific and non-sporulation-specific quantitative polymerase chain reactions (Q-PCRs). The method was invented partly in response to the observation that for the purposes of preventing or reducing biological contamination affecting many human endeavors, ultimately, only the spore-forming portions of bacterial populations are the ones that are problematic (or, at least, more problematic than are the non-spore-forming portions). In some environments, spore-forming bacteria constitute small fractions of the total bacterial populations. The use of sporulation-specific primers in Q-PCR affords the ability to assess the spore-forming fraction of a bacterial population present in an environment of interest. This assessment can provide a more thorough and accurate understanding of the bacterial contamination in the environment, thereby making it possible to focus contamination- testing, contamination-prevention, sterilization, and decontamination resources more economically and efficiently. The method includes the use of sporulation-specific primers in the form of designed, optimized deoxyribonucleic acid (DNA) oligonucleotides specific for the bacterial spoIVA gene (see table). [In "spoIVA," "IV" signifies Roman numeral four and the entire quoted name refers to gene A for the fourth stage of sporulation.] These primers are mixed into a PCR cocktail with a given sample of bacterial cells. A control PCR cocktail into which are mixed universal 16S rRNA primers is also prepared. ["16S rRNA" denotes a ribosomal ribonucleic acid (rRNA) sequence that is common to all organisms.] Following several cycles of heating and cooling according to the PCR protocol to amplify amounts of DNA molecules, the amplification products can be analyzed to determine the types of bacterial cells present within the samples. If the amplification product is strong, relative to the product of a control PCR sequence, then it is concluded that the bacterial population in the sample consists predominantly of spore-forming cells. If the amplification product is weak or nonexistent, then it is concluded that the bacterial population in the sample consists predominantly or entirely of non-spore-forming cells.

Venkateswaran, Kasthuri↗

Feedback Augmented Sub-Ranging (FASR) Quantizer

This innovation is intended to reduce the size, power, and complexity of pipeline analog-to-digital converters (ADCs) that require high resolution and speed along with low power. Digitizers are important components in any application where analog signals (such as light, sound, temperature, etc.) need to be digitally processed. The innovation implements amplification of a sampled residual voltage in a switched capacitor amplifier stage that does not depend on charge redistribution. The result is less sensitive to capacitor mismatches that cause gain errors, which are the main limitation of such amplifiers in pipeline ADCs. The residual errors due to mismatch are reduced by at least a factor of 16, which is equivalent to at least 4 bits of improvement. The settling time is also faster because of a higher feedback factor. In traditional switched capacitor residue amplifiers, closed-loop amplification of a sampled and held residue signal is achieved by redistributing sampled charge onto a feedback capacitor around a high-gain transconductance amplifier. The residual charge that was sampled during the acquisition or sampling phase is stored on two or more capacitors, often equal in value or integral multiples of each other. During the hold or amplification phase, all of the charge is redistributed onto one capacitor in the feedback loop of the amplifier to produce an amplified voltage. The key error source is the non-ideal ratios of feedback and input capacitors caused by manufacturing tolerances, called mismatches. The mismatches cause non-ideal closed-loop gain, leading to higher differential non-linearity. Traditional solutions to the mismatch errors are to use larger capacitor values (than dictated by thermal noise requirements) and/or complex calibration schemes, both of which increase the die size and power dissipation. The key features of this innovation are (1) the elimination of the need for charge redistribution to achieve an accurate closed-loop gain of two, (2) a higher feedback factor in the amplifier stage giving a higher closed-loop bandwidth compared to the prior art, and (3) reduced requirement for calibration. The accuracy of the new amplifier is mainly limited by the sampling networks parasitic capacitances, which should be minimized in relation to the sampling capacitors.

Guilligan, Gerard↗

Deep Diversity: Novel Approach to Overcoming the PCR Bias Encountered During Environmental Analysis of Microbial Populations for Alpha-Diversity

Alpha-diversity studies are of crucial importance to environmental microbiologists. The polymerase chain reaction (PCR) method has been paramount for studies interrogating microbial environmental samples for taxon richness. Phylogenetic studies using this technique are based on the amplification and comparison of the 16S rRNA coding regions. PCR, due disproportionate distribution of microbial species in the environment, increasingly favors the amplification of the most predominant phylotypes with every subsequent reaction cycle. The genetic and chemical complexity of environmental samples are intrinsic factors that exacerbate an inherit bias in PCR-based quantitative and qualitative studies of microbial communities. We report that treatment of a genetically complex total genomic environmental DNA extract with Propidium Monoazide (PMA), a DNA intercalating molecule capable of forming a covalent cross-linkage to organic moieties upon light exposure, disproportionally inactivates predominant phylotypes and results in the exponential amplification of previously shadowed microbial ?-diversity quantified as a 19.5% increase in OUTs reported via phylogenetic screening using PhyloChip.

phylogenetic microarray technologies↗

Instability Wave–Streak Interactions in a High Mach Number Boundary Layer at Flight Conditions

The interaction of stationary streaks undergoing nonmodal growth with modally unstable instability waves in a hypersonic boundary-layer flow is studied using numerical computations. The geometry and flow conditions are selected to match a relevant trajectory location from the ascent phase of the HIFiRE-1 flight experiment; namely, a 7 degree half-angle, circular cone with 2.5 mm nose radius, freestream Mach number equal to 5.30, unit Reynolds number equal to 13.42 m -1 , and wall-to-adiabatic temperature ratio of approximately 0.35 over most of the vehicle. This paper investigates the nonlinear evolution of initially linear optimal disturbances that evolve into finite-amplitude streaks, followed by an analysis of the modal instability characteristics of the perturbed, streaky boundary-layer flow. The investigation is performed with stationary direct numerical simulations (DNS) and plane-marching parabolized stability equations (PSE), in conjunction with partial-differential-equation-based planar eigenvalue analysis. The overall effect of streaks is to reduce the peak amplification factors of instability waves, indicating a possible downstream shift in the onset of laminar-turbulent transition. The present study confirms previous findings that the mean flow distortion of the nonlinear streak perturbation reduces the amplification rates of the Mack-mode instability. More importantly, however, the present results demonstrate that the spanwise varying component of the streak can produce a larger effect on the Mack-mode amplification. The study with selected azimuthal wavenumbers for the stationary streaks reveals that a wavenumber of approximately 1.4 times larger than the optimal wavenumber is more effective in stabilizing the planar Mack-mode instabilities. In the absence of unstable first-mode waves for the present cold-wall condition, transition onset is expected to be delayed until the peak streak amplitude increases to nearly 35 percent of the freestream velocity, when intrinsic instabilities of the boundary-layer streaks begin to dominate the transition process. For streak amplitudes below that limit a significant net stabilization is achieved, yielding a potential transition delay that can exceed 100 percent of the length of the laminar region in the uncontrolled case.

Boundary layer stability↗

Toward Transition Modeling in a Hypersonic Boundary Layer at Flight Conditions

An accurate physics-based transition prediction method integrated with computational fluid dynamics (CFD) solvers is pursued for hypersonic boundary layer flows over slender hypersonic vehicles at flight conditions. The geometry and flow conditions are selected to match relevant trajectory locations from the ascent phase of the HIFiRE-1 flight experiment, namely, a 7-degree half-angle cone with 2.5 mm nose radius, freestream Mach numbers in the range of 3.8 – 5.5 and freestream unit Reynolds numbers in the range of 3.3 × 10(exp 6) – 21.4 × 10(exp 6) m(exp -1). Earlier research had shown that the onset of transition during the HIFiRE-1 flight experiment correlated with an amplification factor of N ≈ 13.5 for the planar Mack modes. However, to incorporate the N-factor correlations into a CFD code, we investigate surrogate models for disturbance amplification that avoid the direct computation of stability characteristics. A commonly used approach for low-speed flows is based on an a priori database of stability characteristics for locally similar profiles. However, the results presented in this paper demonstrate that the application of this approach to hypersonic boundary layers over blunt spherical nose-tip cones leads to large, unacceptable errors in the predictions of amplification factors, mainly due to its failure in accounting for the effects of the entropy layer on the boundary-layer profiles along the length of the model. We propose and demonstrate an alternate approach that employs the stability computations for a canonical set of blunt cone configurations to train a physics-informed convolutional neural network model that is shown to provide substantially improved transition predictions for hypersonic flow configurations with entropy-layer effects. Furthermore, the excellent performance of the neural network model is also confirmed for cone configurations with nose radius and half-angle values that do not correspond to those used to build the database. Finally, the convolutional neural network model is shown to outperform the linear stability calculations for underresolved basic states.

Pedro Paredes↗

Boundary Layer Instabilities Over a Cone-Cylinder-Flare Model at Mach 6

Computations are performed to investigate the boundary-layer instabilities over a sharp cone-cylinder-flare model at zero degrees angle of attack. The model geometry and the flow conditions are selected to match the experiments conducted in the Boeing/AFOSR Mach 6 Quiet Tunnel (BAM6QT) at Purdue University. The geometry consists of a nominally sharp 5-degree half-angle cone, followed by a cylindrical segment and then a 10-degree flare. An axisymmetric separation bubble is generated as a result of the laminar shock/boundary-layer interaction in the cylinder-flare region. The comparison of the laminar flow solution and the schlieren images shows a remarkable agreement between the respective locations of both the boundarylayer edge and the reattachment shock. The predicted heat flux distribution is also in agreement with the measured values downstream of the reattachment location. The analysis of convective and global instabilities is performed for flare half angles equal to 8, 10, and 12 degrees and nosetip radii equal to 0.1, 1, and 5 mm. The linear amplification of first and second Mack mode instabilities that begin to amplify in the cone region are computed with a combination of the parabolized stability equations (PSE) and the harmonic linearized Navier-Stokes equations (HLNSE). The predicted frequency spectra of the surface pressure fluctuations associated with both planar and oblique instability waves are compared with the measured spectra at the various locations of the PCB and Kulite sensors. The comparison shows that the computational analysis captures the distinct lobes within the disturbance amplification spectra measured in the experiments, but some differences in amplification characteristics are noted at low frequencies. Overall, the oblique disturbances are found to be more amplified than the planar disturbances. To our knowledge, this represents the first successful comparison between convective instability analysis and measured surface pressure fluctuations for a hypersonic configuration with a separation bubble. Finally, the global instability analysis shows that the laminar flow becomes supercritical for flare half angles larger than 8 degrees. The unstable global mode for the experimental configuration of a 10 degrees flare and a sharp nosetip cone corresponds to a stationary three-dimensional disturbance that is concentrated in the recirculation region and achieves its maximum growth rate for an azimuthal wavenumber of 5.

Boundary layer transition↗

Transition Analysis for the CRM-NLF Wind Tunnel Configuration using Transport Equation Models and Linear Stability Correlations

Transition models based on auxiliary transport equations augmenting the Reynolds-averaged Navier-Stokes (RANS) framework rely upon transition correlations that were derived from a limited number of low-speed experiments. Furthermore, these models often account for only a subset of the relevant transition mechanisms and/or cannot accurately predict the sensitivity of those mechanisms to the changes in significant flow parameters. A preceding investigation had targeted the assessment of the transport-equation-based transition models in NASA's OVERFLOW 2.3b solver, namely, the amplification factor transport (AFT-2017b) equation model coupled with the Spalart-Allmaras RANS model and the Langtry-Menter transition models (LM2009 without crossflow effects and LM2015 including the modeling of crossflow transition) implemented with Menter’s shear-stress transport equation (SST2003) RANS model. Comparisons with recent measurements at transonic freestream conditions on the Common Research Model with Natural Laminar Flow (CRM-NLF) reinforced our earlier finding that all three of the above models significantly underpredict the reported extent of the laminar flow region over the entire span of the wing, regardless of the dominant instability mechanism(s) underlying the onset of the transition process. The underprediction of the laminar flow extent was attributed to the failure of the above models in accounting for the stabilizing effect of compressibility on the amplification of Tollmien-Schlichting instabilities. Based on previous linear stability studies related to compressibility effects, the present work proposes modifications to the two classes of transition models that reduce to the original form of each model at low subsonic speeds and do not require any nonlocal flow information or additional transport equation(s). The modifications are shown to significantly improve the predicted laminar extent of the flow and compare well against the data from the CRM-NLF experiment. Additionally, a previous assessment of transition prediction based on the dual, nonparallel N -factor method in conjunction with linear parabolized stability equations (PSE) is extended to additional angles of attack to provide the first comprehensive assessment of transition models based on nonparallel disturbance amplification over the CRM-NLF. In general, the transition criterion based on the dual, nonparallel N-factor method with N TS = N CF = 6 is reasonably successful at correlating with the measured transition fronts at R eMAC = 15 million for all angles of attack investigated herein and provides additional validation of the improved predictions from the compressibility-corrected transition models.

CFD modeling↗

Boundary Layer Instabilities Over a Cone-Cylinder-Flare Model at Mach 6

Computations are performed to investigate the boundary-layer instabilities over a sharp cone-cylinder-flare model at zero degrees angle of attack. The model geometry and the flow conditions are selected to match the experiments conducted in the Boeing/AFOSR Mach 6 Quiet Tunnel (BAM6QT) at Purdue University. The geometry consists of a nominally sharp 5-degree half-angle cone, followed by a cylindrical segment and then a 10-degree flare. An axisymmetric separation bubble is generated as a result of the laminar shock/boundary-layer interaction in the cylinder-flare region. The comparison of the laminar flow solution and the schlieren images shows a remarkable agreement between the respective locations of both the boundarylayer edge and the reattachment shock. The predicted heat flux distribution is also in agreement with the measured values downstream of the reattachment location. The analysis of convective and global instabilities is performed for flare half angles equal to 8, 10, and 12 degrees and nosetip radii equal to 0.1, 1, and 5 mm. The linear amplification of first and second Mack mode instabilities that begin to amplify in the cone region are computed with a combination of the parabolized stability equations (PSE) and the harmonic linearized Navier-Stokes equations (HLNSE). The predicted frequency spectra of the surface pressure fluctuations associated with both planar and oblique instability waves are compared with the measured spectra at the various locations of the PCB and Kulite sensors. The comparison shows that the computational analysis captures the distinct lobes within the disturbance amplification spectra measured in the experiments, but some differences in amplification characteristics are noted at low frequencies. Overall, the oblique disturbances are found to be more amplified than the planar disturbances. To our knowledge, this represents the first successful comparison between convective instability analysis and measured surface pressure fluctuations for a hypersonic configuration with a separation bubble. Finally, the global instability analysis shows that the laminar flow becomes supercritical for flare half angles larger than 8 degrees. The unstable global mode for the experimental configuration of a 10 degrees flare and a sharp nosetip cone corresponds to a stationary three-dimensional disturbance that is concentrated in the recirculation region and achieves its maximum growth rate for an azimuthal wavenumber of 5.

Hydrodynamic instability↗

Transition Analysis for the CRM-NLF Wind Tunnel Configuration using Transport Equation Models and Linear Stability Correlations

Transition models based on auxiliary transport equations augmenting the Reynolds-averaged Navier-Stokes (RANS) framework rely upon transition correlations that were derived from a limited number of low-speed experiments. Furthermore, these models often account for only a subset of the relevant transition mechanisms and/or cannot accurately predict the sensitivity of those mechanisms to the changes in significant flow parameters. A preceding investigation had targeted the assessment of the transport-equation-based transition models in NASA's OVERFLOW 2.3b solver, namely, the amplification factor transport (AFT-2017b) equation model coupled with the Spalart-Allmaras RANS model and the Langtry-Menter transition models (LM2009 without crossflow effects and LM2015 including the modeling of crossflow transition) implemented with Menter’s shear-stress transport equation (SST2003) RANS model. Comparisons with recent measurements at transonic freestream conditions on the Common Research Model with Natural Laminar Flow (CRM-NLF) reinforced our earlier finding that all three of the above models significantly underpredict the reported extent of the laminar flow region over the entire span of the wing, regardless of the dominant instability mechanism(s) underlying the onset of the transition process. The underprediction of the laminar flow extent was attributed to the failure of the above models in accounting for the stabilizing effect of compressibility on the amplification of Tollmien-Schlichting instabilities. Based on previous linear stability studies related to compressibility effects, the present work proposes modifications to the two classes of transition models that reduce to the original form of each model at low subsonic speeds and do not require any nonlocal flow information or additional transport equation(s). The modifications are shown to significantly improve the predicted laminar extent of the flow and compare well against the data from the CRM-NLF experiment. Additionally, a previous assessment of transition prediction based on the dual, nonparallel N -factor method in conjunction with linear parabolized stability equations (PSE) is extended to additional angles of attack to provide the first comprehensive assessment of transition models based on nonparallel disturbance amplification over the CRM-NLF. In general, the transition criterion based on the dual, nonparallel N-factor method with N TS = N CF = 6 is reasonably successful at correlating with the measured transition fronts at R eMAC = 15 million for all angles of attack investigated herein and provides additional validation of the improved predictions from the compressibility-corrected transition models.

CFD modeling↗

Combined Bluntness and Roughness Effects on Cones at Hypersonic Speeds

This computational study investigates the effects of discrete roughness elements on a blunt cone at zero degrees angle of attack in a Mach 6 flow. Motivation was provided by experiments conducted in the Air Force Research Laboratory Mach 6 High Reynolds Number facility on a 7-degree half-angle cone with a roughness array located at 45 degrees from the apex on two nose tips of different blutness but equivalent roughness Reynolds number. Transition was only affected on the blunter cone, indicating that the transition onset is associated with the combined effects of bluntness and roughness. The present study investigates the 15.24 mm nose radius, 420 azimuthal wavenumber case via Navier-Stokes computations of the laminar base flow and instability analysis. Plane-marching parabolized stability equations (PSE) and inflow-resolvent analysis based on the three-dimensional, harmonic linearized Navier-Stokes equations (HLNSE) are used to calculate the amplification of disturbances along the roughness wake as well as over the roughness nearfield. Results show that the roughness shape can have a great impact on the characteristics of the most amplified wake instabilities. For the experimental configuration with cubic roughness elements of 15 μ m height, the flow is marginally unstable. For prismatic elements of 20 μ m height, the PSE predicts a logarithmic disturbance amplification ratio of N = 5.6 along its wake, but this ratio increases to N = 9.6 when the amplification over the roughness and separation regions is included in the inflow-resolvent analysis.

Boundary-layer transition↗

Combined Bluntness and Roughness Effects on Cones at Hypersonic Speeds

This computational study investigates the effects of discrete roughness elements on a blunt cone at zero degrees angle of attack in a Mach 6 flow. Motivation was provided by experiments conducted in the Air Force Research Laboratory Mach 6 High Reynolds Number facility on a 7-degree half-angle cone with a roughness array located at 45 degrees from the apex on two nose tips of different blutness but equivalent roughness Reynolds number. Transition was only affected on the blunter cone, indicating that the transition onset is associated with the combined effects of bluntness and roughness. The present study investigates the 15.24 mm nose radius, 420 azimuthal wavenumber case via Navier-Stokes computations of the laminar base flow and instability analysis. Plane-marching parabolized stability equations (PSE) and inflow-resolvent analysis based on the three-dimensional, harmonic linearized Navier-Stokes equations (HLNSE) are used to calculate the amplification of disturbances along the roughness wake as well as over the roughness nearfield. Results show that the roughness shape can have a great impact on the characteristics of the most amplified wake instabilities. For the experimental configuration with cubic roughness elements of 15 μ m height, the flow is marginally unstable. For prismatic elements of 20 μ m height, the PSE predicts a logarithmic disturbance amplification ratio of N = 5.6 along its wake, but this ratio increases to N = 9.6 when the amplification over the roughness and separation regions is included in the inflow-resolvent analysis.

Boundary-layer transition↗

Rational Design of Nanoplasmonic Array Geometries for Biosensing

Background: Molecular diagnostics provide early and accurate diagnosis, which is essential for the prevention and treatment of infectious as well as chronic diseases. These tests are designed to detect disease-specific bioanalytes such as nucleic acid (DNA or RNA) or protein (antigens, antibodies) biomarkers. In the context of infectious disease diagnosis, nucleic acid-based detection methods are known to provide more specific and sensitive results. Here, the presence of a unique sequence belonging to the pathogenic genomic material is targeted to identify species, organism, genera and/or antimicrobial resistant gene markers. The majority of the common nucleic acid based diagnostic techniques require amplification (polymerase chain reaction, isothermal amplification etc.) of the pathogenic genetic material prior to detection impacting diagnostic speed, complexity, and cost thereby limiting ease of use. Thus, the development of simplified nucleic acid-based diagnostics that can be even used in resource-poor settings may hugely benefit patients across the globe. Nanopath is a molecular diagnostics company utilizing a solid-state nanosensor to enable sequence-specific detection of target nucleic acids without the need of amplification. These nanostructures enable ultra-sensitive biomarker detection using geometric, feature-dependent properties highly dependent on the local dielectric environment, allowing them to be sensitive to low concentration binding events. This paper describes an application of this approach to provide highly relevant clinical information within a single doctor’s office visit. Intro: The Nanopath team is in collaboration with NASA (National Aeronautics and Space Administration) and NIST (National Institute of Standards and Technology) to push the bounds of the fundamental physics associated with their biosensing platform. The ability of metals to support electromagnetic surface waves gives rise to surface plasmons when optically illuminated. This property, and its strong sensitivity to changes in the local refractive index, allows for the use of metal nanoparticles as ultra-sensitive transducers. In prior work by members of this team, ensembles of randomly oriented nanoparticles (i.e., colloidal nanorods dispersed on chip) were employed for sequence-specific nucleic acid sensing (1-3). While these particle sensors have the advantage of rapid fabrication, they suffer from low sensitivity and quality factor due to the random particle dispersity. In contrast, in this study we employ ordered array nanoparticle ensembles which can be used to improve sensor sensitivity and figure-of-merit. Study Methods Overview: In this talk, we detail the results of sensing experiments and computational simulations to outline a rational design of the structure of these plasmonic nanoparticle arrays for biomolecular sensing. Through simulation and experiment, we iteratively tailor nanostructure dimension to provide high quality signal and large resonance shifts upon modeled nucleic acid binding. In particular, full-wave electromagnetic simulations were conducted using Lumerical photonic simulation software in which periodic boundary conditions were applied in the x- and y- dimensions for each of the nanoplasmonic sensor geometries. To simulate the resonance response to changes in the bulk solution in contact with the sensor surface, the refractive index of the surrounding media was changed appropriately. Nucleic acid hybridization events were modeled using either using spherical structures approximating the relevant radius of genomic material as estimated by polymer models, or as conformal layers with the known refractive indices for nucleic acids. On the basis of initial simulations, nanosensors were fabricated using traditional electron-beam lithography protocols at NIST. To evaluate consensus between simulations and experiments, bulk sensing experiments were carried out in which the resonance peaks were obtained by submerging the sensors in refractive index standards. Key nanosensor characteristics including resonance peak locations, resonance peak shifts as a function of refractive index, and figure of merit (FOM) of extinction curves were examined between the experimental and simulation results prior to proceeding with simulations on additional geometries and more complex solution conditions, and further device fabrication. This iterative process is repeated toward a rational design of nanoplasmonic array geometries for biosensing optimizing response for targeted disease detection. In summary, this study puts forth a methodology for rational design and characterization of regularly spaced nanoparticle arrays for optics-based biosensing. The results of this study will allow for more informed design of nanostructure geometries towards sequence-specific nucleic acid detection. These improved designs have the potential to improve clinical sensitivity and limit-of-detection across disease indication.

sensor↗