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At least 487 records · Page 27

Continuous and discrete modeling of HIV-1 decline on therapy

Mathematical models have shed light on the dynamics of HIV- 1 infection in vivo. In this paper, we generalize continuous mathematical models of drug therapy for HIV-1 by Perelson et al. (Science 271:1582–1586, 1996) and Perelson and Nelson (SIAM Rev 41:3–44, 1999) on time scales, i.e., a nonempty closed subset of real numbers in order to derive new discrete models that predict the total concentration of plasma virus as a function of time. Here, one of our main goals is to compare discrete mathematical models with the continuous model in Perelson et al. (1996) where HIV infected patients were given protease inhibitors and sampled frequently thereafter. For the comparison, we use experimental data collected in Perelson et al. (1996) and estimate the parameters such as the virion clearance rate and the rate of loss of infected cells by fitting the total concentration of plasma virus to this data set. Our results show that discrete systems describe the best fit. In the previous models of this study, the efficacy of protease inhibitor is assumed to be perfect. Motivated by Perelson and Nelson (1999), we end the paper with a mathematical model of imperfect protease inhibitor and reverse transcriptase (RT) inhibitor combination therapy of HIV-1 infection on time scales with its stability analysis.

60 APPLIED LIFE SCIENCES↗

Continuous Fluorescence Depletion Anisotropy Measurement of Protein Rotation

Protein rotation in viscous environments can be measured by fluorescence depletion anisotropy (FDA) which combines long lifetimes of chromophore triplet states with the sensitivity of fluorescence excitation and detection. FDA achieves sensitivity well beyond that attainable by the more common technique of time-resolved phosphorescence anisotropy (TPA). We have now combined benefits of both time-domain and frequency-domain FDA into a single continuous technique (CFDA). Intensity and polarization of a single laser beam are modulated continuously according to a complex, repeating waveform. Fluorescence signals excited from triplet-forming fluorescent probes are digitized over recurring waveform periods by a high-speed signal averager. CFDA experiments typically involve substantial ground state depletion. Thus signals, unlike those of TPA, are not linear in the exciting light intensity and simple data analysis based on such linearity is not appropriate. An exact solution of the coupled diffusion and triplet production/decay equation describing CFDA within individual data points has been combined with simulated annealing optimization to extract triplet and anisotropy decay kinetics from experimental data. Related calculations compare possible excitation waveforms with respect to rotational information provided per fluorescence photon. We present CFDA results for the model system of eosin conjugates of carbonic anhydrase, BSA and immunoglobulin G in 90% glycerol at various temperatures and initial cellular results on eosin-IgE bound to 2H3 cell Type I Fcε receptors. We explore how CFDA reflects rotational parameters of heterogeneous systems and discuss challenges of extending this method to single cell microscopic measurements.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

Construction of a Solution of the Problem of Stability of a Bar with Arbitrary Continuous Parameters

We consider the problem of stability of a bar with arbitrary continuous variable flexural stiffness compressed by an arbitrary continuously applied variable axial longitudinal force. For the first time, we construct the exact solution of the corresponding differential equation of longitudinal bending. As a result, we obtain the formulas for displacements and internal forces in any cross section of the bar in the analytic form.

97 MATHEMATICS AND COMPUTING↗

Continuous-Time Multidimensional Walks as an Integrable Model

We consider continuous-time random walks on multidimensional symplectic lattices. It is shown that the generating functions of random walks and the transition amplitudes of continuous-time quantum walks can be expressed through dynamical correlation functions of an exactly solvable model describing strongly correlated bosons on a chain, the so-called phase model. The number of random lattice paths with a fixed number of steps connecting the starting and ending points on the multidimensional lattice is expressed through solutions of the Bethe equations of the phase model. Its asymptotics is obtained in the limit of a large number of steps.

97 MATHEMATICS AND COMPUTING↗

Spread of Values of a Cantor-Type Fractal Continuous Nonmonotone Function

By using the Q{sub 5}{sup ∗}-representation of numbers[0,1]∋x=β{sub α{sub 1(x)1}}+∑{sub k=2}{sup ∞}(β{sub α{sub k(x)k}}∏{sub j=1}{sup k−1}q{sub α{sub j(x)j}})=Δ{sub α{sub 1(x)α{sub 2(x)…α{sub k(x)…}{sup Q{sub 5}{sup ∗}}}}} determined by the quinary alphabet A{sub 5} ≡ {0, 1, 2, 3, 4} and an infinite stochastic matrix ‖q{sub ik}‖, i ∈ A{sub 5}, k ∈ N, with positive elements (q{sub 0k} + q{sub 1k} + q{sub 2k} + q{sub 3k} + q{sub 4k} = 1) such that ∏{sub k=1}{sup ∞}max{sub i}{q_i_k}=0 and β{sub 0k} = 0, β{sub i + 1, k} = β{sub ik} + q{sub ik}, i= (0,4)-bar , we define a continuous Cantor-type function by the equalityf(Δ{sub α{sub 1…α{sub k…}{sup Q{sub 5}{sup ∗}}}})=δ{sub α{sub 1(x)1}}+∑{sub k=2}{sup ∞}(δ{sub α{sub k(x)k}}∑{sub j=1}{sup k−1}g{sub α{sub j(x)j}})≡Δ{sub α{sub 1(x)…α{sub k(x)…}{sup G}}}, where δ{sub 0n} = 0, δ{sub 1n}=((2+ε{sub n})/4), δ{sub 2n}=(2/4)=δ{sub 3n}, and δ{sub 4n}=((2−ε{sub n})/4), i.e., δ{sub i + 1, n} = δ{sub in} + g{sub in}, n ∈ N, and (ε{sub n}) is a given sequence of real numbers such that 0 ≤ ε{sub n} ≤ 1. We prove that this function is well defined and continuous. Moreover, it does not have intervals of monotonicity, except the intervals where it is constant. A criterion of bounded variation of the function is also established. We are especially interested in the problem of level sets of the function and in the topological and metric properties of the images of Cantor-type sets.

97 MATHEMATICS AND COMPUTING↗

Powering DNA strand-displacement reactions with a continuous flow reactor

Living systems require a sustained supply of energy and nutrients to survive. These nutrients are ingested, transformed into low-energy waste products, and excreted. In contrast, synthetic DNA strand-displacement reactions typically run within closed systems provided with a finite initial supply of reactants. Once the reactants are consumed, all net reactions halt and the system ceases to function. In the study, we ran DNA strand-displacement reactions in a continuous flow reactor, infusing fresh reactants and withdrawing waste, enabling the system to dynamically update its outputs in response to changing inputs. Running DNA strand-displacement reactions inside of continuous flow reactors allows the system to be re-used for multiple rounds of computation, which could enable the execution of more elaborate information processing tasks, including single-rail negation and sequential logic circuits.

59 BASIC BIOLOGICAL SCIENCES↗

Insights on the continuous representations of piecewise-smooth nonlinear systems: limits of applicability and effectiveness

Dynamical systems subject to intermittent contact are often modeled with piecewise-smooth contact forces. However, the discontinuous nature of the contact can cause inaccuracies in numerical results or failure in numerical solvers. Representing the piecewise contact force with a continuous and smooth function can mitigate these problems, but not all continuous representations may be appropriate for this use. Here, five representations used by previous researchers (polynomial, rational polynomial, hyperbolic tangent, arctangent, and logarithm-arctangent functions) are studied to determine which ones most accurately capture nonlinear behaviors including super- and subharmonic resonances, multiple solutions, and chaos. The test case is a single-DOF forced Duffing oscillator with freeplay nonlinearity, solved using direct time integration. This work intends to expand on past studies by determining the limits of applicability for each representation and what numerical problems may occur.

42 ENGINEERING↗

Modification of the plasma-prepared As–Se–Te films and creation on their base the planar waveguides by continuous laser writing

As a result of the previous experiments (Mochalov et al. in Opt Quant Electron 49(8):274:1–274:11, 2017), it was found that the Te-based chalcogenide films prepared by plasma deposition have a transparency window in the range from 1.2 to 20 μm and cannot be modified in the two-photon absorption mode, and in the linear absorption mode only the thermal effects were observed leading to crystallization of the films or their destruction. In this work, PECVD-prepared As–Se–Te films were modified by continuous laser irradiation of different wavelengths—473, 632.8 and 808 nm. For the modification, samples with compositions As{sub 40}Se{sub 50}Te{sub 10} and As{sub 40}Se{sub 44}Te{sub 16} were deposited on a substrate of epi-polished crystalline sapphire. This paper presents the results of studying of the effect of continuous laser radiation on the optical and structural properties of the chalcogenide films samples. Also, planar waveguided structures based on the As–Se–Te films were formed and investigated.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Stabilization of Softwood-Derived Pyrolysis Oils for Continuous Bio-oil Hydroprocessing

The use of fast pyrolysis as a potential renewable liquid transportation fuel alternative to crude oil depends on successful catalytic upgrading to produce a refinery-ready product with oxygen content and qualities (i.e. specific functional group or compound content) that is compatible with the product’s proposed insertion point. Catalytic upgrading of bio-oil requires high temperature and pressure, while similar to crude oil hydrotreating, is not as straightforward for the thermally unstable pyrolysis oil. For years, a two-temperature zone, downflow trickle bed reactor was the state-of-the art for continuous operation. However, pressure excursion due to plug formation still occurred, typically at the high temperature transition zone, leading to a process shutdown within 140 h. Recently, a bio-oil pre-treatment process, together with a robust commercial catalyst, was found to be enabling the continuous operation of the two-zone hydroprocessing system. Here, we report the results on pre-treating bio-oil at 413 K and 8.4 MPa of flowing H2 (500 L H2/L bio-oil, 0.5 L bio-oil/L catalyst bed) and the attempts to characterize this oil product to understand the chemistry which enabled the long-term processing of bio-oil.

carbonyls↗

Modeling of Dendritic Evolution of Continuously Cast Steel Billet with Cellular Automaton

In order to predict the dendritic evolution during the continuous steel casting process, a simple mechanism to connect the heat transfer at the macroscopic scale and the dendritic growth at the microscopic scale was proposed in the present work. As the core of the across-scale simulation, a two-dimensional cell automaton (CA) model with a decentered square algorithm was developed and parallelized. Apart from nucleation undercooling and probability, a temperature gradient was introduced to deal with the columnar-to-equiaxed transition (CET) by considering its variation during continuous casting. Based on the thermal history, the dendritic evolution in a 4 mm × 40 mm region near the centerline of a SWRH82B steel billet was predicted. The influences of the secondary cooling intensity, superheat, and casting speed on the dendritic structure of the billet were investigated in detail. The results show that the predicted equiaxed dendritic solidification of Fe-5.3Si alloy and columnar dendritic solidification of Fe-0.45C alloy are consistent with in situ experimental results [Yasuda et al. Int J Cast Metals Res 22:15–21 (2009); Yasuda et al. ISIJ Int 51:402–408 (2011)]. Moreover, the predicted dendritic arm spacing and CET location agree well with the actual results in the billet. The primary dendrite arm spacing of columnar dendrites decreases with increasing secondary cooling intensity, or decreasing superheat and casting speed. Meanwhile, the CET is promoted as the secondary cooling intensity and superheat decrease. However, the CET is not influenced by the casting speed, owing to the adjusting of the flow rate of secondary spray water. Compared with the superheat and casting speed, the secondary cooling intensity can influence the cooling rate and temperature gradient in deeper locations, and accordingly exerts a more significant influence on the equiaxed dendritic structure.

36 MATERIALS SCIENCE↗

Study of Non-Newtonian Behavior of CaO-SiO{sub 2}-Based Mold Slag and Its Effect on Lubrication in Continuous Casting of Steel

To understand the effect of the non-Newtonian behavior of mold slag on lubrication during continuous casting of steel, the current study investigated the rheology of CaO-SiO{sub 2}-based mold slag using a rotational viscometer with variable rotating speed. The constitutive equations at different temperatures were determined. Subsequently, the obtained viscosity as a function of temperature and shear rate was incorporated into a validated mathematical model. The main results demonstrated that slag viscosity decreased dramatically with increased shear rate as the experimental temperature approached the break temperature of mold slag, meaning that the mold slag had a property of shear thinning. The predicted evolution of slag viscosity during mold oscillation was consistent with the shear thinning as the shear rate exerted on the slag channel varied. The calculated slag consumption was higher than that for slag treated as a Newtonian fluid, which agreed well with measurements using a miniature continuous caster. This study finds that the consideration of the non-Newtonian behavior of mold slag is significant to understand the lubrication mechanism and optimize related parameters via simulation.

36 MATERIALS SCIENCE↗

Microstructural Evolution of Al-1Fe (Weight Percent) Alloy During Accumulative Continuous Extrusion Forming

As a new microstructure refining method, accumulative continuous extrusion forming (ACEF) cannot only refine metal matrix but also refine the phases that exist in it. In order to detect the refinements of grain and second phase during the process, Al-1Fe (wt pct) alloy was processed by ACEF, and the microstructural evolution was analyzed by electron backscatter diffraction (EBSD) and transmission electron microscopy (TEM). Results revealed that the average grain size of Al-1Fe (wt pct) alloy decreased from 13 to 1.2 μm, and blocky Al{sub 3}Fe phase with an average length of 300 nm was granulated to Al{sub 3}Fe particle with an average diameter of 200 nm, after one pass of ACEF. Refinement of grain was attributed to continuous dynamic recrystallization (CDRX), and the granulation of Al{sub 3}Fe phase included the spheroidization resulting from deformation heat and the fragmentation caused by the coupling effects of strain and thermal effect. The spheroidization worked in almost the entire deformation process, while the fragmentation required strain accumulation. However, fragmentation contributed more than spheroidization. Al{sub 3}Fe particle stimulated the formation of substructure and retarded the migration of recrystallized grain boundary, but the effect of Al{sub 3}Fe phase on refinement of grain could only be determined by the contrastive investigation of Al-1Fe (wt pct) alloy and pure Al.

36 MATERIALS SCIENCE↗

On the Alternate Stirring Mode of F-EMS for Bloom Continuous Castings

Local solute transportation behaviors under different alternate stirring parameters of final electromagnetic stirring (F-EMS) and their influences on the internal quality of the as-cast bloom are compared and evaluated based on a developed coupled model of electromagnetism, heat, and solute transport. To this end, plant trials were conducted in Shaoguan Steel, China. Under the action of F-EMS, a negative segregation band in an ellipse shape is observed at the central area of strand cross section, where the minimum carbon segregation degree is decreased from 0.98 to 0.84 as the stirring duration increases from 15 to 35 seconds in the alternate stirring mode, while it is reduced to 0.805 in the continuous stirring mode. The white band and shrinkage cavity are simultaneously observed at strand center under the conditions of continuous stirring mode, and alternate stirring mode with a stirring period of 35 seconds because of the local over-sustaining melt rotation. In contrast, the V-shape porosity belt width and strand center segregation fluctuation range increase from 60 to 90 mm and from 0.12 to 0.30, respectively, as the stirring duration is reduced from 25 to 15 seconds in the alternate stirring mode because of the poor mixing of the local melt at the strand center.

36 MATERIALS SCIENCE↗

Numerical Simulation of the Effects of Horizontal and Vertical EMBr on Jet Flow and Mold Level Fluctuation in Continuous Casting

In this article, a new type of electromagnetic braking (EMBr), named vertical EMBr (V-EMBr) was introduced in the continuous casting process. In order to investigate its capability and applicability, the impacts of horizontal and vertical EMBrs on the flow pattern in a continuous casting mold were simulated by means of an implemented Reynolds-averaged Navier–Stokes (RANS) SST k–ω turbulence model. The characteristics of electromagnetic field and flow field inside a 1450 mm × 230 mm mold with Ruler-EMBr and V-EMBr have been compared. The numerical simulation results indicate that the static magnetic field generated by Ruler-EMBr can cover the main part of the discharging jet flow, which has a better control of the flow pattern in lower part of the mold. The static magnetic field generated by V-EMBr can cover both the vicinity of the mold narrow faces and the impingement region of the jet flow, which can effectively control the liquid steel flow in the upper recirculation zone. The parametric study also shows that the large vortices beneath the jet flow can be almost completely eliminated at an optimized magnetic flux density with Ruler-EMBr. In addition, the surface velocity and steel/slag interface fluctuation can be suppressed with the application of V-EMBr to acceptable values even with a wide variation of SEN port angles. It is estimated that to reach the same level of braking effect on the upper recirculation flow, a magnetic flux density of 0.1 T is sufficient for V-EMBr, while 0.2 T is needed for Ruler-EMBr. Based on the results, a second-generation V-EMBr has been developed, which combines both of the merits of Ruler-EMBr and V-EMBr.

36 MATERIALS SCIENCE↗

Effect of Nozzle Port Angle on Transient Flow and Surface Slag Behavior During Continuous Steel-Slab Casting

Undesirable flow variations can cause severe instabilities at the interface between liquid mold flux and molten steel across the mold top-region during continuous steel casting, resulting in surface defects in the final products. A three-dimensional Large Eddy Simulation (LES) model using the volume of fluid method for the slag and molten steel phases is validated with plant measurements, and applied to gain new insights into the effects of nozzle port angle on transient flow, top slag/steel interface movement, and slag behavior during continuous slab casting under nominally steady conditions. Upward-angled ports produce a single-roll flow pattern with lower surface velocity, due to rapid momentum dissipation of the spreading jet. However, strong jet wobbling from the port leads to greater interface variations. Severe level drops allow easy entrapment of liquid flux by the solidifying steel shell at the meniscus. Sudden level rises may also be detrimental, leading to overflow of the solidified meniscus region. Downward-angled ports produce a classic double-roll pattern with less jet turbulence and a more stable interface everywhere except near the narrow faces. Finally, the flow patterns, surface velocity, and level predicted from the validated LES model are compared with steady-state standard k-ε model predictions.

36 MATERIALS SCIENCE↗

Closure of Internal Porosity in Continuous Casting Bloom During Heavy Reduction Process

To investigate the closure behavior of internal porosity (also referred to as internal void) in continuous casting bloom during heavy reduction (HR) and thus provide theoretical guidance for minimizing this kind of internal defect more effectively with HR, a three-dimensional (3D) mechanical model was developed based on the predicted temperature field by a 2D heat transfer model. With this 3D mechanical model, closure behaviors of internal porosity in continuous casting bloom during HR at and after the strand solidification end under different process conditions were numerically studied. It was found that the void axis length decreased significantly along the bloom thickness direction and increased slightly along the casting and bloom width directions after HR, and the influence of the initial void size on the void closure was not obvious. With a decrease of temperature difference between the bloom surface and center, HR efficiency for minimizing internal void decreased, while the required reduction force significantly increased. Compared with blooms with a uniform temperature distribution of 1100 °C, the void closure index after HR implemented at the strand solidification end was increased by ~ 25 pct. Compared with a conventional flat roll, the application of a convex roll during HR could contribute to minimizing the internal porosity more effectively and significantly enhance the reduction capacity of the withdrawal and straightening units. The void closure index of η{sub s} and η{sub v} (where η{sub s} and η{sub v} were defined based on the variation of the void aspect ratio and the void volume, respectively) was closely related to the equivalent strain (ε{sub eq}) and the hydrostatic integration parameter (Q), respectively, and two mathematical equations were derived to quantitatively describe the relationship of η{sub s} − ε{sub eq} and η{sub v} − Q.

36 MATERIALS SCIENCE↗

Interaction of Strain Refined Precipitates and Recrystallized Grains in Nb-Ti Microalloyed Steel during Continuous Casting, Hot-Core Heavy Reduction Rolling, and Reheating Process

Hot-core heavy reduction rolling (HHR{sup 2}) is an energy-saving process that directly rolls continuously cast slabs at the end of solidification that have a large temperature gradient. Here, we elucidated the interaction of strain refined precipitates and recrystallized grains in Nb-Ti microalloyed steel during continuous casting, hot-core heavy reduction rolling, and reheating process. Furthermore, theoretical models were established to calculate recrystallization driving force and pinning force at temperatures in the range of 850-1300 °C by a two-stage interrupted compression test using a Gleeble-3800 thermomechanical simulator. The study indicated that a random dispersion of strain refined precipitates with a size range of ~ 6-10 nm was obtained in the hot-core heavy reduction rolled slab, which was different from the coarse and uneven distribution of precipitates in a conventional slab. Upon reheating, the austenite grains in the hot-core heavy reduction rolled slab were significantly refined and evenly distributed along the thickness direction. This is attributed to the random dispersion of strain refined precipitates formed in the HHR{sup 2} process.

36 MATERIALS SCIENCE↗