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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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All sourcesNASA NTRSDOE OSTI
DOE OSTI2021

Building Intelligent Cyberinfrastructure to Learn Iteratively from both Observations and Models for Understanding Watershed Dynamics

Focal Area(s): Predictive modeling through the use of AI techniques and AI-derived model components; the use of AI and other tools to design a prediction system comprising of a hierarchy of models (e.g., AI-driven model/component/parameterization selection). Science Challenge: Watershed processes, such as the fate and transport of sediment, carbon and nutrients across landscapes and their fluxes to water bodies (e.g., streams, rivers and lakes), have important implications for global and regional carbon and nutrient dynamics, biogeochemical functioning of terrestrial ecosystems, and soil functions. The magnitude of lateral surface/subsurface transport and fluxes of sediment, carbon and nutrients are key factors controlling the vulnerability of watersheds to climate extremes such as droughts, wildfires, and floods. Recent field observations and other scientific evidence suggest that the magnitudes of lateral transport and fluxes of sediment, carbon and nutrients are governed primarily by the spatial and vertical heterogeneity of landscape and soil properties and by pedogenic processes. However, the current generation of land surface and watershed models do not mechanistically couple the terrestrial and hydrologic systems, nor do they represent sufficiently the spatial and vertical heterogeneity of land surface and subsurface properties. On the other hand, increasing complexity of coupled watershed and land surface models requires more data to parameterize, calibrate and validate. Remote sensing (RS) provides a means to acquire spatial data and characterize their heterogeneity at the watershed scale, overcoming a major limitation associated with conventional point measurements. To improve the representation of land-surface and surface/subsurface process coupling and sub-grid heterogeneity in watershed models, it is essential to build our predictive understanding by learning from both the multi-scale multi-process modeling and diverse multi-scale data while leveraging powerful artificial intelligence (AI) techniques.

54 ENVIRONMENTAL SCIENCES↗
NASA NTRS2010

Fluvial Channel Networks as Analogs for the Ridge-Forming Unit, Sinus Meridiani, Mars

Fluvial models have been generally discounted as analogs for the younger layered rock units of Sinus Meridiani. A fluvial model based on the large fluvial fan provides a possibly close analog for various features of the sinuous ridges of the etched, ridge-forming unit (RFU) in particular. The close spacing of the RFU ridges, their apparently chaotic orientations, and their organization in dense networks all appear unlike classical stream channel patterns. However, drainage patterns on large fluvial fans low-angle, fluvial aggradational features, 100s of km long, documented worldwide by us provide parallels. Some large fan characteristics resemble those of classical floodplains, but many differences have been demonstrated. One major distinction relevant to the RFU is that channel landscapes of large fans can dominate large areas (1.2 million km2 in one S. American study area). We compare channel morphologies on large fans in the southern Sahara Desert with ridge patterns in Sinus Meridiani (fig 1). Stream channels are the dominant landform on large terrestrial fans: they may equate to the ubiquitous, sinuous, elongated ridges of the RFU that cover areas region wide. Networks of convergent/divergent and crossing channels may equate to similar features in the ridge networks. Downslope divergence is absent in channels of terrestrial upland erosional landscapes (fig. 1, left), whereas it is common to both large fans (fig. 1, center) and RFU ridge patterns (fig 1, right downslope defined as the regional NW slope of Sinus Meridiani). RFU ridge orientation, judged from those areas apparently devoid of impact crater control, is broadly parallel with the regional slope (arrow, fig. 1, right), as is mean orientation of major channels on large fans (arrow, fig. 1, center). High densities per unit area characterize fan channels and martian ridges reaching an order of magnitude higher than those in uplands just upstream of the terrestrial study areas fig. 1. In concert with several other regional features, these morphological similarities argue for the RFU as a possibly fluvial unit.

Wilkinson, M. J.↗
DOE OSTI2012

ORNL Soils Remediation and Slabs Removal - The Bridge from D and D to Redevelopment - 12342

The landscape of the Oak Ridge National Laboratory (ORNL) has dramatically changed over the past 2 years with demolition of aging facilities in the Central Campus. Removal of these infrastructure legacies was possible due to an influx of DOE-Environmental Management funding through the American Recovery and Reinvestment Act of 2009 (ARRA). Facility D and D traditionally removes everything down to the building slab, and the Soils and Sediments Program is responsible for slabs, below-grade footers and sub-grade structures, abandoned waste utilities, and soils contaminated above certain risk levels that must be removed before the site can be considered for redevelopment. DOE-EM has used a combination of base and ARRA funding to facilitate the clean-up process in ORNL's 2000 Area. Demolition of 13 buildings in the area was funded by the ARRA. Characterization of the remaining slabs, underground pipelines and soils was funded by DOE-EM base funding. Additional ARRA funding was provided for the removal of the slabs, pipelines and contaminated soils. Removal work is in progress and consists of removing and disposing of approximately 7,650 cubic meters (m{sup 3}) of concrete, 2,000 m{sup 3} of debris, and 400 m{sup 3} of contaminated soil. Immediately adjacent to the 2000 Area is the Oak Ridge Science and Technology Park and the modernized ORNL western campus. The Science and Technology Park is the only private sector business and technology park located within the footprint of a national laboratory. The completion of this work will not only greatly reduce the risk to the ORNL campus occupants but also allow this much sought after space to be available for redevelopment and site reuse efforts at ORNL. Demolition of aging facilities enabled by injection of ARRA funding has significantly altered the landscape at ORNL while reducing risk to laboratory personnel and operations and providing valuable central campus land parcels for redevelopment to expand and enhance the science mission of the Laboratory. D and D of these infrastructure legacies that were once eyesores that harbored risk in the ORNL Central Campus have been transformed to green spaces and extremely valuable candidate sites for future buildings. The 2000 Area slabs and soils removal marks the first step in creating the bridge between the modernized east and west campus and acts as the cornerstone in the redevelopment of the ORNL Central Campus area which will be a key contributor to ORNL meeting its vision of the future. (authors)

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗
DOE OSTI2024

A Molecular View of Methane Activation on Ni(111) through Enhanced Sampling and Machine Learning

A combination of machine learned interatomic potentials (MLIPs) and enhanced sampling simulations is used to investigate the activation of methane on a Ni(111) surface. The work entails the development and iterative refinement of MLIPs, initially trained on a dataset constructed via ab initio molecular dynamics (AIMD) simulations, supplemented by adaptive biasing forces, to enrich the sampling of catalytically relevant configurations. Our results reveal that by incorporating collective variables that capture the behavior of the reactant molecule, as well as additional frames that describe the dynamic response of the catalytic surface, it is possible to enhance considerably the accuracy of predicted energies and forces. By employing enhanced sampling schemes in the refinement of the MLIP, we systematically explore the potential energy surface, leading to a refined MLIP capable of predicting DFT-level energies and forces and replicating key geometric characteristics of the catalytic system. The resulting free energy landscapes at several temperatures provide a detailed view of the thermodynamics and dynamics of methane activation. Specifically, as methane approaches and dissociates on the catalytic surface, the process involves the dynamic interplay of CH 4 and the Ni catalyst that includes both enthalpic and entropic contributions. The progression towards the transition state involves an CH 4 moiety that is increasingly restrained in its ability to rotate or translate, while the stage following the transition state is characterized by a notable rise of the Ni atom that interacts with the cleaved C–H bond. Furthermore, this leads to an increase in the mobility of the adsorbed species, a feature that becomes more pronounced at higher temperatures.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2022

Global 10 m Land Use Land Cover Datasets: A Comparison of Dynamic World, World Cover and Esri Land Cover

The European Space Agency’s Sentinel satellites have laid the foundation for global land use land cover (LULC) mapping with unprecedented detail at 10 m resolution. We present a cross-comparison and accuracy assessment of Google’s Dynamic World (DW), ESA’s World Cover (WC) and Esri’s Land Cover (Esri) products for the first time in order to inform the adoption and application of these maps going forward. For the year 2020, the three global LULC maps show strong spatial correspondence (i.e., near-equal area estimates) for water, built area, trees and crop LULC classes. However, relative to one another, WC is biased towards over-estimating grass cover, Esri towards shrub and scrub cover and DW towards snow and ice. Using global ground truth data with a minimum mapping unit of 250 m 2 , we found that Esri had the highest overall accuracy (75%) compared to DW (72%) and WC (65%). Across all global maps, water was the most accurately mapped class (92%), followed by built area (83%), tree cover (81%) and crops (78%), particularly in biomes characterized by temperate and boreal forests. The classes with the lowest accuracies, particularly in the tundra biome, included shrub and scrub (47%), grass (34%), bare ground (57%) and flooded vegetation (53%). When using European ground truth data from LUCAS (Land Use/Cover Area Frame Survey) with a minimum mapping unit of <100 m 2 , we found that WC had the highest accuracy (71%) compared to DW (66%) and Esri (63%), highlighting the ability of WC to resolve landscape elements with more detail compared to DW and Esri. Although not analyzed in our study, we discuss the relative advantages of DW due to its frequent and near real-time data delivery of both categorical predictions and class probability scores. We recommend that the use of global LULC products should involve critical evaluation of their suitability with respect to the application purpose, such as aggregate changes in ecosystem accounting versus site-specific change detection in monitoring, considering trade-offs between thematic resolution, global versus. local accuracy, class-specific biases and whether change analysis is necessary. We also emphasize the importance of not estimating areas from pixel-counting alone but adopting best practices in design-based inference and area estimation that quantify uncertainty for a given study area.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2019

Preparing the FUSRAP Colonie Interim Storage Site for Transfer Back to the US Department of Energy Office of Legacy Management - 19215

The Formerly Utilized Sites Remedial Action Program (FUSRAP) Colonie Interim Storage Site was transferred from the US Department of Energy (US DOE) to the US Army Corps of Engineers (USACE) in 1997. The USACE initiated remediation efforts at the Site under FUSRAP. The Site was separated into three distinct operable units (OU) to more efficiently manage the remedial process: 1) Groundwater OU, 2) Main Site Soils OU, and 3) Vicinity Property OU. The USACE has completed remedial actions at each of these three OUs and has advanced the OU remedies at the Site to the long-term stewardship stage to be executed by the US DOE Office of Legacy Management (LM). The US DOE LM is the current real property owner of record of the Colonie Main Site. A summary of each OU and the activities needed to prepare for site transfer follows: OU 1 - USACE issued the Colonie Groundwater OU Record of Decision (ROD) (USACE 2010a) on April 9, 2010. The Groundwater ROD remedy is monitored natural attenuation (MNA) and long-term monitoring (LTM) of groundwater after source removal completion. Results of groundwater monitoring indicate reductions in concentrations of contaminants of concern (COC). Based on the marked progress to date, USACE has optimized the groundwater LTM program (USACE, 2014) by reducing the well network, sampling frequency, and analytical parameters, and by abandoning wells that are no longer needed. A Groundwater ROD Five-Year Review report was submitted to the New York State Department of Environmental Conservation (NYSDEC) for review in 2018. NYSDEC agreed that MNA is still an appropriate remedial method although it is progressing at a slower rate than predicted. OU 2 - From 1999 to 2007, USACE completed the large-scale removal of soil at the Main Site, which included the adjacent Town of Colonie Vicinity Property. Radioactively contaminated soil along with accessible metals-contaminated soil and soil containing volatile organic compounds (VOC) were removed during this effort. A total of 103,402 cubic meters (m{sup 3}) of soil was excavated and disposed offsite. On March 26, 2015, USACE signed the Main Site Soils OU ROD (USACE, 2015a). The ROD remedy included provisions for Land Use Controls (LUC) consisting of institutional controls (IC) through an Environmental Easement for management of three small and discrete inaccessible locations within three of the 27 Final Status Survey units of the Main Site. The Environmental Easement provides a means of protection based on both current and future land use by placing restrictions on soil excavation and reuse. The easement and a supporting Site Management Plan (SMP) will be finalized by LM in coordination with NYSDEC. OU 3 - the Vicinity Property OU ROD was signed on 20 September 2017. This ROD declared No Action (NA) for dust and No Further Action (NFA) for soil and other media for the Vicinity Properties. Prior to the ROD, USACE performed dust sampling and other characterization activities at representative commercial and residential Vicinity Property locations. These efforts were reported in the Colonie FUSRAP Site Vicinity Property Operable Unit Remedial Investigation Summary Report (USACE, 2016). A Site Closeout Report (SCOR) was issued to NYSDEC and approved in 2018. The approval of this report starts the transfer process back to the LM. Ongoing and future transfer activities include records retention and management, preparation and filing of real estate records, physical site management (fencing, landscape maintenance, well abandonment) and coordination with state regulators and LM staff. This presentation is intended to make all stakeholders aware of the necessary steps for site transfer from the USACE back to the LM. (authors)

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗
DOE OSTI2024

A Comprehensive Overview of Postbiotics with a Special Focus on Discovery Techniques and Clinical Applications

The increasing interest in postbiotics, a term gaining recognition alongside probiotics and prebiotics, aligns with a growing number of clinical trials demonstrating positive outcomes for specific conditions. Postbiotics present several advantages, including safety, extended shelf life, ease of administration, absence of risk, and patentability, making them more appealing than probiotics alone. This review covers various aspects, starting with an introduction, terminology, classification of postbiotics, and brief mechanisms of action. It emphasizes microbial metabolomics as the initial step in discovering novel postbiotics. Commonly employed techniques such as NMR, GC-MS, and LC-MS are briefly outlined, along with their application principles and limitations in microbial metabolomics. The review also examines existing research where these techniques were used to identify, isolate, and characterize postbiotics derived from different microbial sources. The discovery section concludes by highlighting challenges and future directions to enhance postbiotic discovery. In the second half of the review, we delve deeper into numerous published postbiotic clinical trials to date. We provide brief overviews of system-specific trial applications, their objectives, the postbiotics tested, and their outcomes. The review concludes by highlighting ongoing applications of postbiotics in extended clinical trials, offering a comprehensive overview of the current landscape in this evolving field.

60 APPLIED LIFE SCIENCES↗
DOE OSTI2018

Exponential number of equilibria and depinning threshold for a directed polymer in a random potential

By extending the Kac–Rice approach to manifolds of finite internal dimension, we show that the mean number &lang;N{sub tot}&rang; of all possible equilibria (i.e. force-free configurations, a.k.a. equilibrium points) of an elastic line (directed polymer), confined in a harmonic well and submitted to a quenched random Gaussian potential in dimension d=1+1, grows exponentially &lang;N{sub tot}&rang; ~exp(r L) with its length L. The growth rate r is found to be directly related to the generalized Lyapunov exponent (GLE) which is a moment-generating function characterizing the large-deviation type fluctuations of the solution to the initial value problem associated with the random Schrödinger operator of the 1D Anderson localization problem. For strong confinement, the rate r is small and given by a non-perturbative (instanton, Lifshitz tail-like) contribution to GLE. For weak confinement, the rate r is found to be proportional to the inverse Larkin length of the pinning theory. As an application, identifying the depinning with a landscape “topology trivialization” phenomenon, we obtain an upper bound for the depinning threshold f{sub c}, in the presence of an applied force, for elastic lines and d-dimensional manifolds, expressed through the mean modulus of the spectral determinant of the Laplace operators with a random potential. We also discuss the question of counting of stable equilibria. Finally, we extend the method to calculate the asymptotic number of equilibria at fixed energy (elastic, potential and total), and obtain the (annealed) distribution of the energy density over these equilibria (i.e. force-free configurations). Some connections with the Larkin model are also established.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗
DOE OSTI2024

DuraMAT: Building a Consortium to Accelerate the Photovoltaic Module Reliability Learning Cycle

Durable and reliable photovoltaic (PV) modules are critical to enabling an efficient transition to sustainable energy generation. The rate at which new module designs and materials are developed and deployed currently outpaces the rate at which we can identify failure mechanisms and understand degradation rates. Increasing the service life of PV modules, and our ability to predict performance over time, requires more durable materials and designs, better durability testing, more extensive material characterization, robust modeling, and methods to cross-examine historical performance data to extract meaningful results. This is a multidisciplinary challenge that requires expertise from a broad range of fields and, therefore, benefits significantly from a collaborative approach. In this Perspective, we outline the approach taken by the Durable Module Materials Consortium (DuraMAT), present a few case studies where our approach was successful, and provide an outlook on where this approach might be applied as the PV technology landscape continues to rapidly evolve. Published by the American Physical Society 2024

14 SOLAR ENERGY↗
DOE OSTI2019

Scaling Functional Traits From Leaves to Canopies

In this chapter, we begin by exploring the relationship between plant functional traits and functional diversity and how this relates to the characterization and monitoring of global plant biodiversity. We then discuss the connection between leaf functional traits and their resulting optical properties (i.e. reflectance, transmittance, andabsorption) and how this related to remote sensing (RS) of functional diversity. Building on this, we briefly discuss the history of RS of functional traits using spectroscopy and imaging spectroscopy data. We include a discussion of the key considerations with the use of imaging spectroscopy data for scaling and mapping plant functional traits across diverse landscapes. From here we provide a review of the general methods for scaling and mapping functional traits, including empirical and radiative transfer model (RTM) approaches. We complete the chapter with a discussion of other key considerations, such as field sampling protocols, as well as current caveats and future opportunities.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2017

Where Carbon Goes When Water Flows: Carbon Cycling across the Aquatic Continuum

The purpose of this review is to highlight progress in unraveling carbon cycling dynamics across the continuum of landscapes, inland waters, coastal oceans, and the atmosphere. Earth systems are intimately interconnected, yet most biogeochemical studies focus on specific components in isolation. The movement of water drives the carbon cycle, and, as such, inland waters provide a critical intersection between terrestrial and marine biospheres. Inland, estuarine, and coastal waters are well studied in regions near centers of human population in the Northern hemisphere. However, many of the world’s large river systems and their marine receiving waters remain poorly characterized, particularly in the tropics, which contribute to a disproportionately large fraction of the transformation of terrestrial organic matter to carbon dioxide, and the Arctic, where positive feedback mechanisms are likely to amplify global climate change. There are large gaps in current coverage of environmental observations along the aquatic continuum. For example, tidally-influenced reaches of major rivers and near-shore coastal regions around river plumes are often left out of carbon budgets due to a combination of methodological constraints and poor data coverage. We suggest that closing these gaps could potentially alter global estimates of CO2 outgassing from surface waters to the atmosphere by several-fold. Finally, in order to identify and constrain/embrace uncertainties in global carbon budget estimations it is important that we further adopt statistical and modeling approaches that have become well-established in the fields of oceanography and paleoclimatology, for example.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2021

Morphological landscapes from high content imaging reveal cytokine priming strategies that enhance mesenchymal stromal cell immunosuppression

Abstract Successful clinical translation of mesenchymal stromal cell (MSC) products has not been achieved in the United States and may be in large part due to MSC functional heterogeneity. Efforts have been made to identify “priming” conditions that produce MSCs with consistent immunomodulatory function; however, challenges remain with predicting and understanding how priming impacts MSC behavior. The purpose of this study was to develop a high throughput, image‐based approach to assess MSC morphology in response to combinatorial priming treatments and establish morphological profiling as an effective approach to screen the effect of manufacturing changes (i.e., priming) on MSC immunomodulation. We characterized the morphological response of multiple MSC lines/passages to an array of Interferon‐gamma (IFN‐γ) and tumor necrosis factor‐⍺ (TNF‐⍺) priming conditions, as well as the effects of priming on MSC modulation of activated T cells and MSC secretome. Although considerable functional heterogeneity, in terms of T‐cell suppression, was observed between different MSC lines and at different passages, this heterogeneity was significantly reduced with combined IFN‐γ/TNF‐⍺ priming. The magnitude of this change correlated strongly with multiple morphological features and was also reflected by MSC secretion of immunomodulatory factors, for example, PGE2, ICAM‐1, and CXCL16. Overall, this study further demonstrates the ability of priming to enhance MSC function, as well as the ability of morphology to better understand MSC heterogeneity and predict changes in function due to manufacturing.

Andrews, Seth H.↗
NASA NTRS1997

Characterizing Hyperspectral Imagery (AVIRIS) Using Fractal Technique

With the rapid increase in hyperspectral data acquired by various experimental hyperspectral imaging sensors, it is necessary to develop efficient and innovative tools to handle and analyze these data. The objective of this study is to seek effective spatial analytical tools for summarizing the spatial patterns of hyperspectral imaging data. In this paper, we (1) examine how fractal dimension D changes across spectral bands of hyperspectral imaging data and (2) determine the relationships between fractal dimension and image content. It has been documented that fractal dimension changes across spectral bands for the Landsat-TM data and its value [(D)] is largely a function of the complexity of the landscape under study. The newly available hyperspectral imaging data such as that from the Airborne Visible Infrared Imaging Spectrometer (AVIRIS) which has 224 bands, covers a wider spectral range with a much finer spectral resolution. Our preliminary result shows that fractal dimension values of AVIRIS scenes from the Santa Monica Mountains in California vary between 2.25 and 2.99. However, high fractal dimension values (D > 2.8) are found only from spectral bands with high noise level and bands with good image quality have a fairly stable dimension value (D = 2.5 - 2.6). This suggests that D can also be used as a summary statistics to represent the image quality or content of spectral bands.

Qiu, Hong-Lie↗
DOE OSTI2024

Bioenergy cropping systems shape ant community composition and functional roles

The adoption of biomass crops grown for energy is a likely source of major landscape change in coming decades during the transition from fossil fuels. There are a wide range of cropping systems that have not been widely deployed yet but could become commonplace, and our knowledge of their ecological attributes and biodiversity impacts is limited. Ants are prominent and functionally important components of grassland and agricultural ecosystems. Given their outsized influences on ecosystem structure and function, we sought to understand how ant communities are likely to be shaped by a range of bioenergy cropping systems. We characterized ant communities in a long-term experimental array in Michigan, USA containing ten dedicated bioenergy crops including annual monocultures, simple monoculture or near-monoculture perennial grasses, and complex polyculture systems. Community composition differed strongly among cropping systems, and ants were more abundant, species-rich, and functionally diverse in complex systems than in simpler systems, particularly annual crops. Our results illustrate the divergent effects that bioenergy crop adoption could have for ant communities and the important functions they carry out in agroecosystems.

Haan, Nathan L.↗
NASA NTRS2015

Mapping Biophysical Parameters for Land Surface Modeling over the Continental US Using MODIS and Landsat

In terms of the space cities occupy, urbanization appears as a minor land transformation. However, it permanently modifies land's ecological functions, altering its carbon, energy, and water fluxes. It is therefore necessary to develop a land cover characterization at fine spatial and temporal scales to capture urbanization's effects on surface fluxes. We develop a series of biophysical vegetation parameters such as the fraction of photosynthetically active radiation, leaf area index, vegetation greenness fraction, and roughness length over the continental US using MODIS and Landsat products for 2001. A 13-class land cover map was developed at a climate modeling grid (CMG) merging the 500mMODIS land cover and the 30m impervious surface area from the National Land Cover Database. The landscape subgrid heterogeneity was preserved using fractions of each class from the 500 m and 30 m into the CMG. Biophysical parameters were computed using the 8-day composite Normalized Difference Vegetation Index produced by the North American Carbon Program. In addition to urban impact assessments, this dataset is useful for the computation of surface fluxes in land, vegetation, and urban models and is expected to be widely used in different land cover and land use change applications.

Biophysical↗
DOE OSTI2019

High Performance Geocomputation for Assessing Human Dynamics at Planet Scale

Settlements are key indicators of human presence on the landscape. Large scale mapping of human settlements and their morphology from very high-resolution satellite images is a critical step towards developing an interpretative understanding of population distribution and the sociocultural attributes of the built environment they live in. Convolutional neural network (CNN) based Deep Learning experiments indicates that such computations can be scaled to some of the largest high-performance computing (HPC) architectures. While early results are encouraging for developing settlement and corresponding population maps at unprecedented speed and spatial resolutions, characterizing human dynamics at planet scale with high temporal resolution will require the community to develop novel geocomputational infrastructures and ecosystems.

Bhaduri, Budhu↗
DOE OSTI2020

An atlas of dynamic chromatin landscapes in mouse fetal development

The Encyclopedia of DNA Elements (ENCODE) project has established a genomic resource for mammalian development, profiling a diverse panel of mouse tissues at 8 developmental stages from 10.5 days after conception until birth, including transcriptomes, methylomes and chromatin states. Here we systematically examined the state and accessibility of chromatin in the developing mouse fetus. In total we performed 1,128 chromatin immunoprecipitation with sequencing (ChIP–seq) assays for histone modifications and 132 assay for transposase-accessible chromatin using sequencing (ATAC–seq) assays for chromatin accessibility across 72 distinct tissue-stages. We used integrative analysis to develop a unified set of chromatin state annotations, infer the identities of dynamic enhancers and key transcriptional regulators, and characterize the relationship between chromatin state and accessibility during developmental gene regulation. We also leveraged these data to link enhancers to putative target genes and demonstrate tissue-specific enrichments of sequence variants associated with disease in humans. The mouse ENCODE data sets provide a compendium of resources for biomedical researchers and achieve, to our knowledge, the most comprehensive view of chromatin dynamics during mammalian fetal development to date.

59 BASIC BIOLOGICAL SCIENCES↗