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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 487 records · Page 27
All sourcesNASA NTRSDOE OSTI
DOE OSTI2020

A nonparametric approach to modeling dependence among production parameters for energy cost estimation

Dependence existing among production parameters can significantly affect energy costs. For material removal processes, processing times and material amounts to be cut have positive dependence, and the dependence can affect energy costs by varying a peak electricity load. Existing methods to model the dependence of production parameters are based on parametric approaches that cannot accurately represent the dependence due to the rigid nature of parametric models. To address this issue, this study proposes a method to quantify dependence among manufacturing parameters through the application of the empirical copula to the dependence between the milling processing time and the amount of volume to be cut. The proposed method is illustrated by a case study of a manufacturing facility consisting of milling machines; a total of 27 scenarios are simulated for energy cost estimations. The case study clearly shows that the proposed method can capture the dependence between the milling parameters more accurately than a conventional dependence measure from parametric correlation models. Furthermore, the findings from this study would be useful to estimate energy costs in that the proposed method provides a better fit to real production data than conventional parametric approaches can.

42 ENGINEERING↗
DOE OSTI2017

Effect of the early reionization on the cosmic microwave background and cosmological parameter estimates

The early reionization (ERE) is supposed to be a physical process which happens after recombination, but before the instantaneous reionization caused by the first generation of stars. We investigate the effect of the ERE on the temperature and polarization power spectra of cosmic microwave background (CMB), and adopt principal components analysis (PCA) to model-independently reconstruct the ionization history during the ERE. In addition, we also discuss how the ERE affects the cosmological parameter estimates, and find that the ERE does not impose any significant influences on the tensor-to-scalar ratio r and the neutrino mass at the sensitivities of current experiments. The better CMB polarization data can be used to give a tighter constraint on the ERE and might be important for more precisely constraining cosmological parameters in the future.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2023

Direct Estimation of Parameters in ODE Models Using WENDy: Weak-Form Estimation of Nonlinear Dynamics

Abstract We introduce the Weak-form Estimation of Nonlinear Dynamics (WENDy) method for estimating model parameters for non-linear systems of ODEs. Without relying on any numerical differential equation solvers, WENDy computes accurate estimates and is robust to large (biologically relevant) levels of measurement noise. For low dimensional systems with modest amounts of data, WENDy is competitive with conventional forward solver-based nonlinear least squares methods in terms of speed and accuracy. For both higher dimensional systems and stiff systems, WENDy is typically both faster (often by orders of magnitude) and more accurate than forward solver-based approaches. The core mathematical idea involves an efficient conversion of the strong form representation of a model to its weak form, and then solving a regression problem to perform parameter inference. The core statistical idea rests on the Errors-In-Variables framework, which necessitates the use of the iteratively reweighted least squares algorithm. Further improvements are obtained by using orthonormal test functions, created from a set of $$C^{\infty }$$ C ∞ bump functions of varying support sizes.We demonstrate the high robustness and computational efficiency by applying WENDy to estimate parameters in some common models from population biology, neuroscience, and biochemistry, including logistic growth, Lotka-Volterra, FitzHugh-Nagumo, Hindmarsh-Rose, and a Protein Transduction Benchmark model. Software and code for reproducing the examples is available at https://github.com/MathBioCU/WENDy .

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2022

Estimation of stagnation performance metrics in magnetized liner inertial fusion experiments using Bayesian data assimilation

Here we present a new analysis methodology that allows for the self-consistent integration of multiple diagnostics including nuclear measurements, x-ray imaging, and x-ray power detectors to determine the primary stagnation parameters, such as temperature, pressure, stagnation volume, and mix fraction in magnetized liner inertial fusion (MagLIF) experiments. The analysis uses a simplified model of the stagnation plasma in conjunction with a Bayesian inference framework to determine the most probable configuration that describes the experimental observations while simultaneously revealing the principal uncertainties in the analysis. We validate the approach by using a range of tests including analytic and three-dimensional MHD models. An ensemble of MagLIF experiments is analyzed, and the generalized Lawson criterion χ is estimated for all experiments.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗
DOE OSTI2017

Hubble Parameter Measurement Constraints on The Redshift of The Deceleration–Acceleration Transition, Dynamical Dark Energy, and Space Curvature

We compile an updated list of 38 measurements of the Hubble parameter $H(z)$ between redshifts 0.07 $≤ z ≤$ 2.36 and use them to place constraints on model parameters of constant and time-varying dark energy cosmological models, both spatially flat and curved. We use five models to measure the redshift of the cosmological deceleration–acceleration transition, $z_{da}$, from these H(z) data. Within the error bars, the measured zda are insensitive to the model used, depending only on the value assumed for the Hubble constant $H_0$. The weighted mean of our measurements is $z_{da}$ = 0.72 ± 0.05 (0.84 ± 0.03) for $H_0$ = 68 ± 2.8 (73.24 ± 1.74) km s -1 Mpc -1 and should provide a reasonably model-independent estimate of this cosmological parameter. The H(z) data are consistent with the standard spatially flat ΛCDM cosmological model but do not rule out nonflat models or dynamical dark energy models.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2018

A Robust State Estimation Framework Considering Measurement Correlations and Imperfect Synchronization

This paper develops a robust power system state estimation framework with the consideration of measurement correlations and imperfect synchronization. In the framework, correlations of SCADA and PMU measurements are calculated separately through unscented transformation and a vector autoregression (VAR) model. In particular, PMU measurements during the waiting period of two SCADA measurement scans are buffered to develop the VAR model. The latter takes into account the temporal and spatial correlations of PMU measurements and provides redundant measurements to suppress bad data and mitigate imperfect synchronization. In case of synchronization issues between SCADA and PMU measurements, either forecasted PMU measurements or prior SCADA measurements from the last estimation run are leveraged to restore system observability. After that, robust generalized maximum-likelihood (GM)-estimator is developed to integrate full measurement correlations and handle bad data in SCADA and PMU measurements. Thanks to the robustness and flexibility of the proposed robust estimator, bad data as well as imperfect measurement synchronization are mitigated, yielding high statistical efficiency. Comprehensive comparison results with other alternatives under various conditions demonstrate the benefits of the proposed framework.

Zhao, Junbo (ORCID:0000000284989666)↗
DOE OSTI2023

Practical Understanding of Cancer Model Identifiability in Clinical Applications

Mathematical models are a core component in the foundation of cancer theory and have been developed as clinical tools in precision medicine. Modeling studies for clinical applications often assume an individual’s characteristics can be represented as parameters in a model and are used to explain, predict, and optimize treatment outcomes. However, this approach relies on the identifiability of the underlying mathematical models. In this study, we build on the framework of an observing-system simulation experiment to study the identifiability of several models of cancer growth, focusing on the prognostic parameters of each model. Our results demonstrate that the frequency of data collection, the types of data, such as cancer proxy, and the accuracy of measurements all play crucial roles in determining the identifiability of the model. We also found that highly accurate data can allow for reasonably accurate estimates of some parameters, which may be the key to achieving model identifiability in practice. As more complex models required more data for identification, our results support the idea of using models with a clear mechanism that tracks disease progression in clinical settings. For such a model, the subset of model parameters associated with disease progression naturally minimizes the required data for model identifiability.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2022

Investigating key cell types and molecules dynamics in PyMT mice model of breast cancer through a mathematical model

The most common kind of cancer among women is breast cancer. Understanding the tumor microenvironment and the interactions between individual cells and cytokines assists us in arriving at more effective treatments. Here, we develop a data-driven mathematical model to investigate the dynamics of key cell types and cytokines involved in breast cancer development. We use time-course gene expression profiles of a mouse model to estimate the relative abundance of cells and cytokines. We then employ a least-squares optimization method to evaluate the model’s parameters based on the mice data. The resulting dynamics of the cells and cytokines obtained from the optimal set of parameters exhibit a decent agreement between the data and predictions. We perform a sensitivity analysis to identify the crucial parameters of the model and then perform a local bifurcation on them. The results reveal a strong connection between adipocytes, IL6, and the cancer population, suggesting them as potential targets for therapies.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2020

Calculations of Astrophysical Reaction Rates Using ENDF/B-VIII.0 Library

Recent observations of neutron stars merger (GW170817) renewed interest in stellar nucleosynthesis. Stellar nucleosynthesis modeling requires fully traceable, unbiased, high fidelity nuclear data. The Evaluated Nuclear Data File (ENDF) libraries contain complete collections of reaction data sets over the nuclear industry standard 10 -5 eV - 20 MeV energy span. For the first time, the (n,γ), (n,fission), (n,p), and (n,α) astrophysical reaction rates were computed within the 0.01-10 GK range of temperatures using the ENDF/B-VIII.0 library, and nuclear Reaction rate Library for astrophysics (REACLIB) fit parameters were deduced. The present results were used to estimate the slow neutron capture timescale. These findings demonstrate the potential astrophysical applications of the ENDF libraries and the complementary relations between the nuclear industry and astrophysics data developments.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗
DOE OSTI2017

Measurement of Delayed Neutron Group Parameters Using the Fission Burst of CFBR-II

Delayed neutron group parameters are vitally important to estimate the reactivity in reactor operation. By now, a large amount of out-of-pile and in-pile experimental techniques have been developed to measure the values of the few-group parameters. Keepin's six-group data are widely used and have been proved to be one of the most appropriate datasets for many reactors, so as for the Chinese Fast Burst Reactor-II(CFBR-II). However, it was found that there was an overestimated reactivity of approximately 0.02$ using Keepin's dataset in our validation experiments, which may be problematic for experiments with the requirement of higher accuracy, and a more suitable set of delayed neutron parameters is needed for CFBR-II. As intensive delayed neutron precursors will be generated during a fission burst, the leakage neutron decay of CFBR-II right after the fission spike was measured to determine the decayed neutron parameters of the CFBR-II assembly, and hopefully the data can be used in the precise determination of the reactor reactivity in the future.

21 SPECIFIC NUCLEAR REACTORS AND ASSOCIATED PLANTS↗
DOE OSTI2019

Making Steppingstones out of Stumbling Blocks: A Bayesian Model Evidence Estimator with Application to Groundwater Transport Model Selection

Bayesian model evidence (BME) is a measure of the average fit of a model to observation data given all the parameter values that the model can assume. By accounting for the trade-off between goodness-of-fit and model complexity, BME is used for model selection and model averaging purposes. For strict Bayesian computation, the theoretically unbiased Monte Carlo based numerical estimators are preferred over semi-analytical solutions. This study examines five BME numerical estimators and asks how accurate estimation of the BME is important for penalizing model complexity. The limiting cases for numerical BME estimators are the prior sampling arithmetic mean estimator (AM) and the posterior sampling harmonic mean (HM) estimator, which are straightforward to implement, yet they result in underestimation and overestimation, respectively. We also consider the path sampling methods of thermodynamic integration (TI) and steppingstone sampling (SS) that sample multiple intermediate distributions that link the prior and the posterior. Although TI and SS are theoretically unbiased estimators, they could have a bias in practice arising from numerical implementation. For example, sampling errors of some intermediate distributions can introduce bias. We propose a variant of SS, namely the multiple one-steppingstone sampling (MOSS) that is less sensitive to sampling errors. We evaluate these five estimators using a groundwater transport model selection problem. SS and MOSS give the least biased BME estimation at an efficient computational cost. If the estimated BME has a bias that covariates with the true BME, this would not be a problem because we are interested in BME ratios and not their absolute values. On the contrary, the results show that BME estimation bias can be a function of model complexity. Thus, biased BME estimation results in inaccurate penalization of more complex models, which changes the model ranking. This was less observed with SS and MOSS as with the three other methods.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2021

Perspectives on the Calibration of CNN Energy Reconstruction in Highly Granular Calorimeters

We present a study which shows encouraging stability of the response linearity for a simulated high granularity calorimeter module reconstructed by a CNN model to miscalibration, bias, and noise effects. Our results also show an intuitive, quantifiable relationship between these factors and the calibration parameters. We trained a CNN model to reconstruct energy in the calorimeter module using simulated single-pion events; we then observed the response of the model under various miscalibration, bias, and noise conditions that affected the model input. From these data, we estimated linear response models to calibrate the CNN. We also quantified the relationship between these factors and the calibration parameters by regression analysis.

Akchurin, Nural↗
DOE OSTI2022

Scaled Vecchia Approximation for Fast Computer-Model Emulation

Many scientific phenomena are studied using computer experiments consisting of multiple runs of a computer model while varying the input settings. Gaussian processes (GPs) are a popular tool for the analysis of computer experiments, enabling interpolation between input settings, but direct GP inference is computationally infeasible for large datasets. We adapt and extend a powerful class of GP methods from spatial statistics to enable the scalable analysis and emulation of large computer experiments. Specifically, we apply Vecchia’s ordered conditional approximation in a transformed input space, with each input scaled according to how strongly it relates to the computer-model response. The scaling is learned from the data by estimating parameters in the GP covariance function using Fisher scoring. Our methods are highly scalable, enabling estimation, joint prediction, and simulation in near-linear time in the number of model runs. In several numerical examples, our approach substantially outperformed existing methods.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2016

PBPK modeling of the cis- and trans-permethrin isomers and their major urinary metabolites in rats

Permethrin, a pyrethroid insecticide, is suspected to induce neuronal and hormonal disturbances in humans. The widespread exposure of the populations has been confirmed by the detection of the urinary metabolites of permethrin in biomonitoring studies. Permethrin is a chiral molecule presenting two forms, the cis and the trans isomers. Because in vitro studies indicated a metabolic interaction between the trans and cis isomers of permethrin, we adapted and calibrated a PBPK model for trans- and cis-permethrin separately in rats. The model also describes the toxicokinetics of three urinary metabolites, cis- and trans-3-(2,2 dichlorovinyl)-2,2-dimethyl-(1-cyclopropane) carboxylic acid (cis- and trans-DCCA), 3-phenoxybenzoic acid (3-PBA) and 4′OH-phenoxybenzoic acid (4′-OH-PBA). In vivo experiments performed in Sprague–Dawley rats were used to calibrate the PBPK model in a Bayesian framework. The model captured well the toxicokinetics of permethrin isomers and their metabolites including the rapid absorption, the accumulation in fat, the extensive metabolism of the parent compounds, and the rapid elimination of metabolites in urine. Average hepatic clearances in rats were estimated to be 2.4 and 5.7 L/h/kg for cis- and trans-permethrin, respectively. High concentrations of the metabolite 4′-OH-PBA were measured in urine compared to cis- and trans-DCCA and 3-PBA. The confidence in the extended PBPK model was then confirmed by good predictions of published experimental data obtained using the isomers mixture. The extended PBPK model could be extrapolated to humans to predict the internal dose of exposure to permethrin from biomonitoring data in urine. - Highlights: • A PBPK model of isomers of permethrin and its urinary metabolites was developed. • A quantitative link was established for permethrin and its biomarkers of exposure. • The bayesian framework allows getting confidence interval on the estimated parameters. • The PBPK model can be extrapolated to human and used in a reverse dosimetry context.

60 APPLIED LIFE SCIENCES↗
DOE OSTI2018

Quantifying Model Form Uncertainty of Epidemic Forecasting Models from Incidence Data

Objective We present a mathematical framework for non-parametric estimation of the force of infection, together with statistical upper and lower confidence bands. The resulting estimates allow to assess how well simpler models, such as SEIR, fit the observed time series of incidence data.IntroductionUncertainty Quantification (UQ), the ability to quantify the impact of sample-to-sample variations and model misspecification on predictions and forecasts, is a critical aspect of disease surveillance. While quantifying the impact of stochastic uncertainty in the data is well understood, quantifying the impact of model misspecification is significantly harder. For the latter, one needs a "universal model" to which more restrictive parametric models are compared too.MethodsThis talk presents a useful modeling framework for time series of incidence data from contagious diseases that enables one to identify and quantify the impact of model form uncertainty. Specifically, we propose to focus on estimating the timedependent force of infection. The latter is a universal parameters for all contagious disease model. Using a machine learning technique for estimating monotone functions, i.e., isotonic regression and its variants, one can estimate the force ofinfection without addtional assumptions. We note that most contagious disease model do satisfy this monotonicity assumption, due to a combination of factors: depletion of susceptibles, implementation of mitigation strategies, behavior change, etc. Comparing the resulting "non-parametric" estimate with parametric estimates, obtained by fitting an SEIR for example, can reveal model deficiencies and help quantify model form uncertainties.Finally, we discuss how ideas from "strict bound theory" can be used to develop upper and lower uncertainty bands for force of infection that acknowledge the intrinsic stochasticity in the data.ResultsWe demonstrate the application of the methodology to weekly Influenza Like Illness (ILI) incidence data from France andcompare the results to fitted SIR and SEIR models. This comparison can be seen as a nonparametric goodness of fit test, providing one with tools to do simple model selection.ConclusionsWe present a novel and flexible model to statistically describe the force of infection as a function of time. Comparing the fit to incidence data of that model with the fit of simpler parametric models enables the quantification of model form uncertainty and associated model selection.

Hengartner, Nicholas↗
DOE OSTI2020

Fatigue behavior and modeling for additive manufactured 304L stainless steel: The effect of surface roughness

The fatigue strength of additively manufactured metallic parts in their as-built surface condition is mainly dominated by the surface roughness. Post-processing is often inevitable to reduce surface roughness effects even though post-processing diminishes the main advantage of additive manufacturing, which is net-shaped direct-to-service production. This work investigates the underlying mechanisms responsible for fatigue failure of additively manufactured 304L stainless steel parts in as-built and machined/polished surface conditions. Both strain- and force-controlled, fully reversed fatigue tests were conducted to gain a comprehensive understanding of surface roughness effects on fatigue behavior. The sensitivity to surface roughness is shown to be dependent on the control mode, with stress-based fatigue tests showing greater sensitivity than strain-based fatigue tests. Moreover, the fatigue life estimation for as-built specimens was performed based on surface roughness parameters as well as the fatigue properties of the specimens in machined/polished surface condition of the material without using any fatigue data of specimens in as-built surface condition. Accordingly, the effect of surface roughness on the fatigue behavior could be estimated reasonably well in both strain-life and stress-life approaches.

36 MATERIALS SCIENCE↗
DOE OSTI2016

DREISS: Using State-Space Models to Infer the Dynamics of Gene Expression Driven by External and Internal Regulatory Networks

Gene expression is controlled by the combinatorial effects of regulatory factors from different biological subsystems such as general transcription factors (TFs), cellular growth factors and microRNAs. A subsystem’s gene expression may be controlled by its internal regulatory factors, exclusively, or by external subsystems, or by both. It is thus useful to distinguish the degree to which a subsystem is regulated internally or externally–e.g., how non-conserved, species-specific TFs affect the expression of conserved, cross-species genes during evolution. We developed a computational method (DREISS, dreiss.gerteinlab.org) for analyzing the Dynamics of gene expression driven by Regulatory networks, both External and Internal based on State Space models. Given a subsystem, the “state” and “control” in the model refer to its own (internal) and another subsystem’s (external) gene expression levels. The state at a given time is determined by the state and control at a previous time. Because typical time-series data do not have enough samples to fully estimate the model’s parameters, DREISS uses dimensionality reduction, and identifies canonical temporal expression trajectories (e.g., degradation, growth and oscillation) representing the regulatory effects emanating from various subsystems. To demonstrate capabilities of DREISS, we study the regulatory effects of evolutionarily conserved vs. divergent TFs across distant species. In particular, we applied DREISS to the time-series gene expression datasets of C. elegans and D. melanogaster during their embryonic development. We analyzed the expression dynamics of the conserved, orthologous genes (orthologs), seeing the degree to which these can be accounted for by orthologous (internal) versus species-specific (external) TFs. We found that between two species, the orthologs have matched, internally driven expression patterns but very different externally driven ones. This is particularly true for genes with evolutionarily ancient functions (e.g. the ribosomal proteins), in contrast to those with more recently evolved functions (e.g., cell-cell communication). This suggests that despite striking morphological differences, some fundamental embryonic-developmental processes are still controlled by ancient regulatory systems.

Biochemistry & Molecular Biology↗