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DOE OSTI2026

TETA Autoresearch [SWR-26-089]

TETA Autoresearch is a template repository based on github.com/karpathy/autoresearch for AI-assisted research science in the TETA group in the Center for Integrated Mobility Sciences (CIMS) center at the National Laboratory of the Rockies. This software is a template for running autonomous research experiments that iteratively improve an ML model for a single optimization objective. Two execution modes share one harness: LLM mode - an agent (e.g. Claude Code) edits a scaffold train.py one change at a time, tagging each experiment, logging reasoning, and pushing results. Defined by program.md. Optimizer mode - an Optuna-backed driver (TPE / CMA-ES / Random) iterates over a domain-defined search space. Defined by optimizers/. RouteE (vehicle energy prediction) is the reference domain under domains/routee/. Adding a new domain is mechanical - see EXTENDING.md.

Reinicke, Nicholas [National Laboratory of the Roc↗

DOE OSTI2026

ORCHA: A performance portability system for extreme heterogeneity

Heterogeneity is the prevalent trend in the rapidly evolving high-performance computing (HPC) landscape in both hardware and application software. The diversity in hardware platforms, currently comprising various accelerators and a future possibility of specializable chiplets, poses a significant challenge for scientific software developers aiming to harness optimal performance across different computing platforms while maintaining the quality of solutions when their applications are simultaneously growing more complex. Code synthesis and code generation can provide mechanisms to mitigate this challenge. We have developed a divide and conquer approach where different aspects of performance are handled by different stand-alone tools that are interfaced with the application through generated code. This portability system, ORCHA, enables users to configure and orchestrate their computations among available resources on a platform by specifying a high-level recipe, thereby permitting a many-to-many paradigm where each recipe results in a different variant of the application. The core design goal is to let users decide the application’s hardware mapping and orchestration by editing only the high-level recipe—without modifying the maintained source code or binding the application to a particular runtime system. Tools in ORCHA distribution are: CG-Kit for translating the recipe into an execution graph; Milhoja to execute the graph by orchestrating data and task movement among hardware resources; and Macroprocessor that enables users to define their own code-shorthand for higher composability and easier management of code variants. Additionally, the design of ORCHA permits tools to work in a plug-and-play mode where the application can build and run without CG-Kit and Milhoja, and either tool can be swapped out for other tools with similar capabilities by modifying the code generation portion of ORCHA. In this paper, we describe the design of ORCHA and the role that code-generation plays in isolating applications from tools. We demonstrate the breadth of configurations ORCHA enables with a case study in which an application configuration is realized on three distinct hardware mappings—a GPU-centric, a CPU/GPU balanced, and a CPU/GPU concurrent layouts by using different recipes.

Lee, Youngjun↗

DOE OSTI2024

Genome-wide identification and diversity of FAD2, FAD3 and FAE1 genes in terms of biotechnological importance in Camelina species

False flax, or gold-of-pleasure (Camelina sativa) is an oilseed that has received renewed research interest as a promising vegetable oil feedstock for liquid biofuel production and other non-food uses. This species has also emerged as a model for oilseed biotechnology research that aims to enhance seed oil content and fatty acid quality. To date, a number of genetic engineering and gene editing studies on C. sativa have been reported. Among the most common targets for this research are genes, encoding fatty acid desaturases, elongases, and diacylglycerol acyltransferases. However, the majority of these genes in C. sativa are present in multiple copies due to the allohexaploid nature of the species. Therefore, genetic manipulations require a comprehensive understanding of the diversity of such gene targets.

09 BIOMASS FUELS↗

DOE OSTI2026

EMT Workshop 2026

These are files for the 2026 workshop edition of the

Marthi, Phani Ratna Vanamali [ORNL] (ORCID:0000000↗

DOE OSTI2026

2002 Treasure Valley Transportation Survey

The 2002 Treasure Valley Transportation Survey was conducted in Ada and Canyon counties in southwest Idaho, under contract with the Community Planning Association of Southwest Idaho. The full study was conducted during September 2002 and October 2002 and entailed the collection of activity and travel information for all household members, regardless of age, during an assigned 24-hour period (Tuesday, Wednesday, or Thursday). In addition to providing basic demographic information about each household and its members, the survey documented specific travel characteristics and trips made, including the number of occupants, trip purpose, time of day, and questions specific to mode use. Travel days for the survey were spread across the pilot study (August 8, 2002) and the full study (September 3, 2002-October 31, 2002). In total, 3,488 households were recruited to participate in the study. Of these, 2,582 completed travel diaries (fully completed and passed edit check procedures), and the information was retrieved from all household members.

1Hz data↗

DOE OSTI2024

Modeling the Effects of Artificial Drainage on Agriculture-dominated Watersheds using a Fully Distributed Integrated Hydrology Model: Datasets, scripts, model files

This model-data archive supports the research paper that demonstrates the integration of agricultural drainage features—specifically, narrow engineered ditches and tile drains—into a fully distributed, basin-scale integrated surface-subsurface hydrology model (ISSHM), Amanzi-ATS. The model employs innovative computational meshes aligned with agricultural ditches and incorporates the physically based Hooghoudt's drainage equation to simulate tile drainage, offering a novel strategy that enhances the accuracy of hydrological simulations.The archived dataset includes input parameters, model configurations, and select simulation outputs for the Amanzi-ATS model that successfully captured the streamflow patterns in the Portage River Watershed as validated by USGS gauge readings. Jupyter notebook for the preparation of model inputs and post-processing of outputs are also included. The model's predictive performance achieved a normalized Kling-Gupta Efficiency (KGE) of 0.81, surpassing SWAT without the necessity for site-specific calibration.The Amanzi-ATS model presented in this modeL-data archive allows for numerical experiments to explore the shifts in the flow structure under different drainage scenarios. As a tool for advancing the understanding of distributed hydrological responses and nutrient cycling, this archived model provides valuable insights for researchers, modelers, and decision-makers involved in watershed management and environmental modeling.The Watershed Workflow package is implemented in Python3. The Jupyter notebooks can be executed through multiple open-source tools, for example, Anaconda Jupyter Lab, VS Studio Code, etc. Other data files include CSV and HDF5 files, which can be read through Python scripts. The input files for the ATS model, open-source integrated hydrology, and transport model, are in XML format and can be edited in any commonly used text editors.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2025

Old Woman Creek Wetland Sediment and Electrochemical Sensor Microbial Community, 2023

We are developing a technique to monitor microbiological activities referred to as zero resistance ammetry, which entails the deployment of graphite electrodes in sediments. Measurement of current between electrodes of contrasting redox regimes and/or predominant terminal electron accepting processes can be used as an indicator of the extents of microbiological activity. We deployed an electrode array at depths of 2 mm, 4 mm, 76 mm, 78 mm, 152 mm, 154 mm, 227 mm, and 229 mm below the wetland sediment water interface in the Old Woman Creek National Estuarine Research Center, Huron, OH, USA (Lat. = 41.380833, Long. = -82.508889). A core was collected from adjacent sediment and subsamples were collected from depth intervals of 0 – 25 mm, 25 – 127 mm, 127 – 128 mm, and below 178 mm. To determine if the microbial communities attached to the electrodes were reflective of the adjacent sediment-associated microbial community, we conducted a 16S rRNA gene-based (V4 region) survey of these respective materials. This data package contains the results of these surveys, including metadata on the depths from which samples were collected (samples.csv), DNA extraction and sequencing information (OWC_DEPTH_AMPLICON_SEQUENCING_METADATA), sequence processing information (OWC_DEPTH_BIOINFORMATIC_METADATA.csv), an operational taxonomic unit (OTU) table (OWC_DEPTH_97OTUS_TABLE.csv), and nucleotide sequences of OTUs (OWC_DEPTH_97OTUS_SEQS.fasta). All files can be opened using a text-editing application. The fasta file is compatible with bioinformatics applications.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2026

Monthly Mean In Situ Surface Flux Observations Paired with Satellite-Derived and Reanalysis-Based Flux Data for the Great Lakes Region, 2001–2020

Surface radiative and turbulent heat fluxes over the Great Lakes strongly influence regional hydrological and meteorological processes, and their accurate representation is critical for numerical weather prediction and coupled atmosphere–lake modeling. However, direct flux observations are spatially sparse across the region, so gridded reanalysis and satellite-derived products are often used for climatological analyses and model evaluation despite differences in their flux representations. This dataset provides processed, quality-controlled, monthly mean surface flux observations from the Great Lakes Evaporation Network (GLEN), AmeriFlux, and the National Data Buoy Center, paired with spatiotemporally matched flux estimates from two reanalysis products, the fifth generation European Centre for Medium-Range Weather Forecasts (ECMWF) reanalysis dataset (ERA5) and the Modern Era Reanalysis for Research and Applications, version 2 (MERRA-2), and two satellite-derived products, the Clouds and Earth's Radiant Energy Systems Energy Balanced and Filled (CERES-EBAF) and the Cloud, Albedo and Surface Radiation dataset from AVHRR data - Edition 3 (CLARA-A3). The dataset includes sixteen observational stations with variable temporal coverage within 2001–2020. For each station, a CSV file contains monthly time series of available flux variables, including surface downwelling shortwave radiation (SW), surface downwelling longwave radiation (LW), sensible heat (SH) flux, and latent heat flux (LH), alongside matched gridded product values where available. Columns in the CSV file correspond to different variables sourced from each dataset, with column titles structured as "{dataset}_{variable}". Columns with relevant metadata are also provided in each CSV file, including station latitude and longitude, monthly timestamps, and the name of the sourced observational data. These files are structured for direct use in common analysis tools, including Microsoft Excel, Python pandas, and Python matplotlib. This dataset supports climatological analysis of the Great Lakes regional surface energy budget, evaluation of satellite-derived and reanalysis-based flux products, and development or validation of flux representations in numerical weather prediction and coupled atmosphere–lake models.

Great Lakes↗

DOE OSTI2026

Model Data Archive for Manuscript Titled "Evaluation of a Coupled Surface–Subsurface Hydrologic Model Using Dense Water‑Level Sensors in a Mixed Urban–Rural Watershed"

This archive provides scripts, input files, and datasets used for the implementation and evaluation of a fully coupled surface–subsurface hydrologic model in the Neches River Basin, southeast Texas. The study uses the Advanced Terrestrial Simulator (ATS) to simulate coupled surface–subsurface hydrologic processes over a mixed urban–rural watershed and evaluates model performance using a dense network of 136 in situ water-level sensors, nine U.S. Geological Survey (USGS) stream gauges, and SSEBop-derived evapotranspiration estimates during the period October 2014–June 2024. The workflow is implemented primarily in Python 3 using the Watershed Workflow package. The Jupyter notebooks can be executed using open-source software such as Anaconda JupyterLab or Visual Studio Code. Other data files include TXT, CSV, XML, SHP, TIF, NetCDF, HDF5, and ExodusII files, which can be processed using the provided Python scripts. ATS input files are provided in XML format and can be edited using any commonly used text editor. This archive contains: *Scripts and input files used to generate the ATS model setup, including watershed discretization, mesh generation, parameter mapping, and model configuration. *Jupyter notebooks used for preprocessing observational data, evaluating streamflow, water levels, and evapotranspiration, computing performance metrics, and generating the figures presented in the manuscript. *ATS simulation outputs and processed observational datasets, including OneRain and DD6 water-level sensors, USGS streamflow observations, GIS data, and supporting spatial datasets used throughout the study.

Dense water-level sensor network↗

DOE OSTI2024

Establishing a clostridia foundry for biosystems design by integrating computational modeling, systems-level analyses, and cell-free engineering technologies (Final Report)

Rapid population growth, a rise in global living standards, and economic competitiveness have intensified the need for sustainable, low-cost biofuels and bioproducts production. Industrial biotechnology using microbial cell factories – and waste and/or renewable feedstocks – is one of the most attractive approaches for addressing this need, particularly when large-scale chemical synthesis is untenable. Unfortunately, designing, building, and optimizing biosynthetic pathways in cells remains a complex challenge. With support from the Department of Energy, we worked to address this challenge in a new interdisciplinary venture that established the world’s first clostridial Foundry for Biosystems Design (cBioFAB). Working both in vitro (cell-free) and in vivo, the goal of this project was to interweave and advance state-of-the-art computational modeling, genome editing, omics measurements, systems-biology analyses, and cell-free technologies to expand the set of platform organisms that meet DOE bioenergy goals. Specifically, we manufactured fuel and chemical intermediates via existing and de novo pathways. This report covers the outcomes of our research project.

09 BIOMASS FUELS↗

DOE OSTI2024

Going under the hood of MontePy: A python API for MCNP input files [Slides]

MontePy is an open-source python software library for reading, editing, and writing MCNP input files. This presentation was given to a university research group interested in it. MontePy provides an object-oriented interface for working with these MCNP input files. It uses a lexer and parser system in order to create a concrete syntax tree representing the input from the input file.

97 MATHEMATICS AND COMPUTING↗

DOE OSTI2024

Large Eddy Simulation and Analysis of Truck Generated Droplet Spray Transport at Bridges

Weathering steel is a particular type of steel that develops a higher level of atmospheric corrosion protection than non-weathering grades of steel. While uncoated weathering steels have the appearance of being “rusted”, there are many forms of ferric oxyhydroxides (aka. rust) that can form on steel. The predominant ferric oxyhydroxide that gives uncoated weathering steel its tightly adherent patina is goethite. The atmospheric corrosion protection comes from alloying, primarily with a copper composition greater than 0.20 percent and also small amounts of chrome, nickel, and silicon. Bare atmospheric corrosion resistant steels have been recognized as far back as 1905 with very early editions of the American Society for Testing and Materials (ASTM) A 7 “Standard Specification for Steel for Bridges and Buildings” [1]. Uncoated weathering steel (UWS) is the lowest cost corrosion protection system possible for a steel bridge based on the first cost. Provided the UWS is used in an optimal environment that allows the protective patina to form, UWS also provides the lowest life cycle cost. The protective patina on UWS does not form or degrades in continuously damp conditions, forming a higher proportion of lepidocrocite, or in the presence of a concentration of chlorine ions that is too high, forming a higher proportion of akageneite.

36 MATERIALS SCIENCE↗

DOE OSTI2024

Isotopic Analysis using FRAM [Slides]

FRAM is an isotopic analysis code nominally designed for plutonium and uranium. It stands for Fixed-energy Response-function Analysis with Multiple efficiencies. It has self-calibration using several gamma-ray peaks and can analyze gamma ray data from 30keV to >1MeV of HPGe, CdTe, or LaBr3 detector. The key difference between the MGA family of codes (from LLNL) and FRAM is the use of user-editable analysis parameters in the latter.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

DOE OSTI2024

2020 U.S. Lighting Market Characterization

The Lighting Market Characterization report details how many lighting products (lamps and luminaires) were installed in the U.S. as of 2020, where they were installed, and how much energy they consumed. It also highlights key changes in U.S. lighting market characteristics between 2015 and 2020. This is the fourth edition of the LMC report; previous versions were released in 2002, 2012 and 2017. By publishing summary estimates of installed stock and energy use of various general illumination lighting products, these reports help DOE and others plan effective lighting research and development programs based on changing needs.

32 ENERGY CONSERVATION, CONSUMPTION, AND UTILIZATI↗

DOE OSTI2024

2020 U.S. Lighting Market Characterization

32 ENERGY CONSERVATION, CONSUMPTION, AND UTILIZATI↗

DOE OSTI2024

2020 U.S. Lighting Market Characterization

32 ENERGY CONSERVATION, CONSUMPTION, AND UTILIZATI↗

DOE OSTI2024

NNSA MSIIP Intern Biweekly Report - #3

These couple of weeks I continued doing solvent tests with the 3D printed actuators. I made measurements and organized the data obtained from the tests. I was also able to get a logic gate design that worked according to the logic and was able to start printing and modifying the design. I've been understanding more about what parts of the design it would be best to modify and why certain ideas do not work versus others. I've been communicating with my mentor when I make edits to the design to ensure I keep moving forward with it and make it look closer and closer to what we need it to. I've continued to attend the seminars held by the department and learned more about the different methods of 3d printing and the different projects that are being worked on here.

36 MATERIALS SCIENCE↗

DOE OSTI2024

CHARACTERIZATION OF FATIGUE BEHAVIORS OF NOTCHED 316L DED AM SPECIMENS

ASME Codification of Additive Manufacturing • Integration of AM into ASME Codes and Standards • The ASME goal is to have AM requirements in ASME Code Cases preceding the 2025 Edition. • The ASME Special Committee on AM has drafted criteria for two Code Cases for Additive Manufacturing. • AM Construction of Pressure Equipment using the Direct Energy Deposition Process with Wire Feedstock. • Includes Gas Metal Arc Welding. • Time-independent material properties. • Status - Criteria endorsed by AM Committee. • AM Construction of Pressure Equipment using the Powder Bed Fusion AM Process. • Includes Laser and Electron Beam Energy Sources. • Austenitic and Nonferrous materials. • Time-independent material properties. • Status – Approval ballot circulating to the AM Committee.

Krentz, Timothy M.↗