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At least 505 records · Page 28

Programming Tools: Status, Evaluation, and Comparison

In this tutorial I will first describe the characteristics of scientific applications and their developers, and describe the computing environment in a typical high-performance computing center. I will define the user requirements for tools that support application portability and present the difficulties to satisfy them. These form the basis of the evaluation and comparison of the tools. I will then describe the tools available in the market and the tools available in the public domain. Specifically, I will describe the tools for converting sequential programs, tools for developing portable new programs, tools for debugging and performance tuning, tools for partitioning and mapping, and tools for managing network of resources. I will introduce the main goals and approaches of the tools, and show main features of a few tools in each category. Meanwhile, I will compare tool usability for real-world application development and compare their different technological approaches. Finally, I will indicate the future directions of the tools in each category.

Cheng, Doreen Y.↗

A Framework for Distributed Rover Control and Three Sample Applications

In order to develop quality control software for multiple robots, a common interface is required. By developing components in a modular fashion with well-defined boundaries, roboticists can write code to program a generic rover, and only require very simple modifications to run on any robot with a properly implemented framework. The proposed framework advances a Generic Rover that could be any rover, from Real World Interface's All Terrain Robot Vehicle Jr. series to the Fido-class rovers from the Jet Propulsion Laboratory to any other research robot. Using these generic hardware interfaces, software designers and engineers can concentrate on the actual code, and not have to worry about hardware details. In addition to the hardware support framework, three sample applications have been developed to demonstrate the flexibility and extensibility of the framework.

McGuire, Steve↗

Scientific Visualization of Large Scale Unsteady Fluid Flow

In a numerical flow simulation. it is common to generate several thousand time steps of unsteady (time-dependent) flow data. Each time step may require tens to hundreds of megabytes for disk storage, and the total disk requirement for storing the unsteady flow data may be hundreds of gigabytes. Interactive visualization of unsteady flow data of this magnitude is presently impossible with the current hardware technology. This chapter describes the current approaches for unsteady flow visualization. An effective particle tracing technique for unsteady flow is also described. First, the life cycle of a typical numerical flow simulation is outlined. Several unsteady flow data sets from real-world problems are then given. The current approaches for visualizing unsteady flow are then described. There are many existing systems for flow visualization, and some of them are discussed. Streaklines depict time-varying phenomena that are sometimes difficult or impossible to see with other visualization techniques. The algorithms for computing streaklines are described. Several unsteady flow data sets have been visualized using streaklines, and the results are presented. Finally, some current issues in unsteady flow visualization are discussed.

Lane, David A.↗

Stochastic Modeling and Generation of Partially Polarized or Partially Coherent Electromagnetic Waves

Many new Earth remote-sensing instruments are embracing both the advantages and added complexity that result from interferometric or fully polarimetric operation. To increase instrument understanding and functionality a model of the signals these instruments measure is presented. A stochastic model is used as it recognizes the non-deterministic nature of any real-world measurements while also providing a tractable mathematical framework. A stationary, Gaussian-distributed model structure is proposed. Temporal and spectral correlation measures provide a statistical description of the physical properties of coherence and polarization-state. From this relationship the model is mathematically defined. The model is shown to be unique for any set of physical parameters. A method of realizing the model (necessary for applications such as synthetic calibration-signal generation) is given and computer simulation results are presented. The signals are constructed using the output of a multi-input multi-output linear filter system, driven with white noise.

Davis, Brynmor↗

Test Results for an Off-the-Shelf GPS/INS During Approach and Landing Testing of the X-40A

The X-37 is an unpiloted, reusable space vehicle that will be launched into space, orbit the Earth, reenter the atmosphere, and land autonomously. At the heart of the Guidance, Navigation and Control (GN&C) will be the Space Integrated GPS/INS (SIGI) system, an off the shelf navigation grade GPS/INS that has been enhanced for space and reentry environments. SIGI will provide both navigation and flight control data to the X-37's GN&C. The X-40A is an unpiloted experimental vehicle whose shape and performance are similar to the X-37's and was flown earlier this year to develop and test the approach and landing phase of X-37. On board the X-40A is the X-37's SIGI, which is riding along as an experiment. The X-40A SIGI experiment provided early characterization of SIGI operation and performance with differential GPS (Global Positioning System) during real world approach and landing. Characterization testing was geared toward assessment of reliability and performance of the system. The objectives were to demonstrate performance levels sufficient to meet the X-37 requirements for automatic, autonomous approach and landing, demonstrate reliability over repeated ground and flight tests, and reduce risk for integration of SIGI into the vehicle and support environment. This paper presents a summary of this testing and the results to date.

Childers, Dave↗

Captain, sensors report ...: Correction of Remote Sensing Data

Remote sensing data acquired by airborne and satellite Systems have many impressive virtues for ecology and other sciences. They are synoptic. They are extremely cheap per data point. They cover large areas. They are not subjective. They detect features that are of clear and obvious interest for many uses. But, they also yield totally irreproducible measurements. Sensors that operate in the visible, near infrared and thermal portions of the spectrum are sensitive to a host of phenomena that are usually of little interest to the average user. Fully recognizing the power and sophistication of the algorithms currently available to users of remote sensing, the authors as long time developers (20+ years) of such algorithms, demonstrate that a host of other signals are convolved with the typical data set, and that many of these signals are very commonly not even recognized, and that these signals are often larger than the signal from the putative target. These derive from both geometric and radiometric sources as well as fundamental flaws in sensor engineering. Until such extraneous factors can be controlled or eliminated the utility of the data is greatly restricted. Finally, the authors lay out a design elements for a rational sensor and methods of deconvolving the complexity of the real world data using such a sensor.

Rickman, Doug↗

Code Parallelization with CAPO: A User Manual

A software tool has been developed to assist the parallelization of scientific codes. This tool, CAPO, extends an existing parallelization toolkit, CAPTools developed at the University of Greenwich, to generate OpenMP parallel codes for shared memory architectures. This is an interactive toolkit to transform a serial Fortran application code to an equivalent parallel version of the software - in a small fraction of the time normally required for a manual parallelization. We first discuss the way in which loop types are categorized and how efficient OpenMP directives can be defined and inserted into the existing code using the in-depth interprocedural analysis. The use of the toolkit on a number of application codes ranging from benchmark to real-world application codes is presented. This will demonstrate the great potential of using the toolkit to quickly parallelize serial programs as well as the good performance achievable on a large number of toolkit to quickly parallelize serial programs as well as the good performance achievable on a large number of processors. The second part of the document gives references to the parameters and the graphic user interface implemented in the toolkit. Finally a set of tutorials is included for hands-on experiences with this toolkit.

Jin, Hao-Qiang↗

Automatic Generation of Heuristics for Scheduling

This paper presents a technique, called GenH, that automatically generates search heuristics for scheduling problems. The impetus for developing this technique is the growing consensus that heuristics encode advice that is, at best, useful in solving most, or typical, problem instances, and, at worst, useful in solving only a narrowly defined set of instances. In either case, heuristic problem solvers, to be broadly applicable, should have a means of automatically adjusting to the idiosyncrasies of each problem instance. GenH generates a search heuristic for a given problem instance by hill-climbing in the space of possible multi-attribute heuristics, where the evaluation of a candidate heuristic is based on the quality of the solution found under its guidance. We present empirical results obtained by applying GenH to the real world problem of telescope observation scheduling. These results demonstrate that GenH is a simple and effective way of improving the performance of an heuristic scheduler.

Morris, Robert A.↗

Automated Reuse of Scientific Subroutine Libraries through Deductive Synthesis

Systematic software construction offers the potential of elevating software engineering from an art-form to an engineering discipline. The desired result is more predictable software development leading to better quality and more maintainable software. However, the overhead costs associated with the formalisms, mathematics, and methods of systematic software construction have largely precluded their adoption in real-world software development. In fact, many mainstream software development organizations, such as Microsoft, still maintain a predominantly oral culture for software development projects; which is far removed from a formalism-based culture for software development. An exception is the limited domain of safety-critical software, where the high-assuiance inherent in systematic software construction justifies the additional cost. We believe that systematic software construction will only be adopted by mainstream software development organization when the overhead costs have been greatly reduced. Two approaches to cost mitigation are reuse (amortizing costs over many applications) and automation. For the last four years, NASA Ames has funded the Amphion project, whose objective is to automate software reuse through techniques from systematic software construction. In particular, deductive program synthesis (i.e., program extraction from proofs) is used to derive a composition of software components (e.g., subroutines) that correctly implements a specification. The construction of reuse libraries of software components is the standard software engineering solution for improving software development productivity and quality.

Lowry, Michael R.↗

High-Performance Java Codes for Computational Fluid Dynamics

The computational science community is reluctant to write large-scale computationally -intensive applications in Java due to concerns over Java's poor performance, despite the claimed software engineering advantages of its object-oriented features. Naive Java implementations of numerical algorithms can perform poorly compared to corresponding Fortran or C implementations. To achieve high performance, Java applications must be designed with good performance as a primary goal. This paper presents the object-oriented design and implementation of two real-world applications from the field of Computational Fluid Dynamics (CFD): a finite-volume fluid flow solver (LAURA, from NASA Langley Research Center), and an unstructured mesh adaptation algorithm (2D_TAG, from NASA Ames Research Center). This work builds on our previous experience with the design of high-performance numerical libraries in Java. We examine the performance of the applications using the currently available Java infrastructure and show that the Java version of the flow solver LAURA performs almost within a factor of 2 of the original procedural version. Our Java version of the mesh adaptation algorithm 2D_TAG performs within a factor of 1.5 of its original procedural version on certain platforms. Our results demonstrate that object-oriented software design principles are not necessarily inimical to high performance.

Riley, Christopher↗

New NAS Parallel Benchmarks Results

NPB2 (NAS (NASA Advanced Supercomputing) Parallel Benchmarks 2) is an implementation, based on Fortran and the MPI (message passing interface) message passing standard, of the original NAS Parallel Benchmark specifications. NPB2 programs are run with little or no tuning, in contrast to NPB vendor implementations, which are highly optimized for specific architectures. NPB2 results complement, rather than replace, NPB results. Because they have not been optimized by vendors, NPB2 implementations approximate the performance a typical user can expect for a portable parallel program on distributed memory parallel computers. Together these results provide an insightful comparison of the real-world performance of high-performance computers. New NPB2 features: New implementation (CG), new workstation class problem sizes, new serial sample versions, more performance statistics.

Yarrow, Maurice↗

Analysis of 2D Torus and Hub Topologies of 100Mb/s Ethernet for the Whitney Commodity Computing Testbed

A variety of different network technologies and topologies are currently being evaluated as part of the Whitney Project. This paper reports on the implementation and performance of a Fast Ethernet network configured in a 4x4 2D torus topology in a testbed cluster of 'commodity' Pentium Pro PCs. Several benchmarks were used for performance evaluation: an MPI point to point message passing benchmark, an MPI collective communication benchmark, and the NAS Parallel Benchmarks version 2.2 (NPB2). Our results show that for point to point communication on an unloaded network, the hub and 1 hop routes on the torus have about the same bandwidth and latency. However, the bandwidth decreases and the latency increases on the torus for each additional route hop. Collective communication benchmarks show that the torus provides roughly four times more aggregate bandwidth and eight times faster MPI barrier synchronizations than a hub based network for 16 processor systems. Finally, the SOAPBOX benchmarks, which simulate real-world CFD applications, generally demonstrated substantially better performance on the torus than on the hub. In the few cases the hub was faster, the difference was negligible. In total, our experimental results lead to the conclusion that for Fast Ethernet networks, the torus topology has better performance and scales better than a hub based network.

Pedretti, Kevin T.↗

Incompressible Navier-Stokes Computations in Aerospace and Beyond

Challenges in applying CFD to real world problems will be discussed using incompressible flow examples. Despite the remarkable progress made in CFD technology during the past two decades, new challenges are ahead of us. Some of these will be discussed in conjunction with the incompressible Navier-Stokes solver development and their applications. Computed examples include wing tip vortex formation and propagation, flow simulation of an advanced rocket pump, and an extension of the similar technology to biofluid analysis and design. Numerical issues dealing with these applications will be discussed both from algorithm development and from application point of view. The material will be printed in a bound volume after the symposium.

Kwak, Dochan↗

From the Origins of Life to Intelligence: The Emergence of Symbolic Constructs

Intelligence cannot be understood - and cannot be 'artificially recreated' - without also understanding how it fits as a phenomenon in the evolution of matter. I say 'matter' instead of 'life' because my thesis is that the distinction between matter, with its associated interactions, and life, is simply in the complexity of these interactions and in the number of 'symbolic levels' that are defined by these interactions. Most of us think of symbols only in the context of language. This is understandable, since it is at this level where it is easiest to draw a distinction between natural objects and their 'names', i.e., the different sets of 'abstract' objects that can be manipulated to produce models of the 'real' world. Of course sets of abstract objects can also acquire names and be manipulated at higher and higher conceptual levels. When we use the words 'philosophy' or 'the Declaration of Independence' we use abstract constructs that will only make sense in other specific abstract contexts. Additional information is contained in the original extended abstract.

Colombano, Silvano P.↗

Planning Under Continuous Time and Resource Uncertainty: A Challenge for AI

There has been considerable work in Al on decision-theoretic planning and planning under uncertainty. Unfortunately, all of this work suffers from one or more of the following limitations: 1) it relies on very simple models of actions and time, 2) it assumes that uncertainty is manifested in discrete action outcomes, and 3) it is only practical for very small problems. For many real world problems, these assumptions fail to hold. A case in point is planning the activities for a Mars rover. For this domain none of the above assumptions are valid: 1) actions can be concurrent and have differing durations, 2) there is uncertainty concerning action durations and consumption of continuous resources like power, and 3) typical daily plans involve on the order of a hundred actions. We describe the rover problem, discuss previous work on planning under uncertainty, and present a detailed. but very small, example illustrating some of the difficulties of finding good plans.

Bresina, John↗

The Logic of Reachability

In recent years, Graphplan style reachability analysis and mutual exclusion reasoning have been used in many high performance planning systems. While numerous refinements and extensions have been developed, the basic plan graph structure and reasoning mechanisms used in these systems are tied to the very simple STRIPS model of action. In 1999, Smith and Weld generalized the Graphplan methods for reachability and mutex reasoning to allow actions to have differing durations. However, the representation of actions still has some severe limitations that prevent the use of these techniques for many real-world planning systems. In this paper, we 1) separate the logic of reachability from the particular representation and inference methods used in Graphplan, and 2) extend the notions of reachability and mutual exclusion to more general notions of time and action. As it turns out, the general rules for mutual exclusion reasoning take on a remarkably clean and simple form. However, practical instantiations of them turn out to be messy, and require that we make representation and reasoning choices.

Smith, David E.↗

[ ] or SUCCESS is Not Enough: Current Technology and Future Directions in Proof Presentation

Automated theorem provers for first order logic are now around for several decades. Over the last few years, their deductive power to solve hard problems has increased tremendously. The annual CASC system competitions [Se97] give a clear picture of this situation. However, today's automated theorem provers are restricted "more by general usability than by raw deductive power." As a result of this, there are only very few serious applications of automated theorem provers. There are numerous features which a theorem prover lacks for real-world applicability. An automated theorem prover (as it is currently seen) is nothing more than a fast and elaborate search procedure. In that sense, an ATP can compared to a formulated race car, cool and fast, but virtually unusable for shopping groceries around the corner. Many important features are missing, or are optimized for speed rather than for applicability. [Schol] identifies important features which are needed for practical usability like detection of non-theorems, handling of modal/inductive proof tasks, control of the prover, and proof output. In this paper, we will focus solely on the last point, the presentation of the ATP's result to the user. In the rest of this paper, we will first discuss the general importance of providing feedback to the user, then we will describe the system ExplainIt!, a part of the deductive synthesis system AMPHION/NAV. In the conclusions we will relate proof presentation to other ways of post-processing a proof found by an ATP and stress their role in the future of automated deduction.

Schumann, Johann↗

A Three Dimensional Parallel Time Accurate Turbopump Simulation Procedure Using Overset Grid Systems

The objective of the current effort is to provide a computational framework for design and analysis of the entire fuel supply system of a liquid rocket engine, including high-fidelity unsteady turbopump flow analysis. This capability is needed to support the design of pump sub-systems for advanced space transportation vehicles that are likely to involve liquid propulsion systems. To date, computational tools for design/analysis of turbopump flows are based on relatively lower fidelity methods. An unsteady, three-dimensional viscous flow analysis tool involving stationary and rotational components for the entire turbopump assembly has not been available for real-world engineering applications. The present effort provides developers with information such as transient flow phenomena at start up, and non-uniform inflows, and will eventually impact on system vibration and structures. In the proposed paper, the progress toward the capability of complete simulation of the turbo-pump for a liquid rocket engine is reported. The Space Shuttle Main Engine (SSME) turbo-pump is used as a test case for evaluation of the hybrid MPI/Open-MP and MLP versions of the INS3D code. CAD to solution auto-scripting capability is being developed for turbopump applications. The relative motion of the grid systems for the rotor-stator interaction was obtained using overset grid techniques. Unsteady computations for the SSME turbo-pump, which contains 114 zones with 34.5 million grid points, are carried out on Origin 3000 systems at NASA Ames Research Center. Results from these time-accurate simulations with moving boundary capability will be presented along with the performance of parallel versions of the code.

Kiris, Cetin↗