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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 505 records · Page 28
All sourcesNASA NTRSDOE OSTI
DOE OSTI2024

Using Parameter Sweep in WaterTAP to Analyze New Water Treatment Technologies

We describe a powerful and generalized parameter sweep tool in this report that was originally developed to analyze the performance of existing and novel water treatment models being developed in WaterTAP. Since WaterTAP is built upon IDAES and Pyomo, the parameter sweep tool can be used to systematically explore and debug the behavior of most Pyomo and IDAES numerical models. In order to enable meaningful analyses, the parameter sweep tool has been designed with the following features: 1) Model flexibility: The parameter sweep tool does not enforce any restrictions on the types of models that can be used with it. As long as a Pyomo model can be solved and the parameter is active and mutable, the tool only needs functions that describe how to run the model, the sweep parameters, and the output quantities of interest. 2) Flexible sampling: The parameter sweep tool has inbuilt functions to generate samples from a random distribution or a multidimensional Euclidean space. Furthermore, the users have to ability to supply samples generated from a tool of their choice. 3) Multiple sweep types: A user can choose from one of 3 types of parameter sweeps depending on their needs. 4) Detailed outputs: Outputs generated by the parameter sweep tool can be stored in detailed H5 file or user-friendly CSV files for post processing. 5) Parallel computing: The parameter sweep supports shared and distributed memory parallel computing to enable the use of high performance computers (HPC) for large-scale analyses. 6) Modular: The parameter sweep tool is self-contained and can easily be integrated within an outer-loop analysis or as desired by the user. 7) Ease of use: The tool is well documented and a simple sweep can be easily executed by following the online documentation in a few lines of code. We demonstrate the use of the parameter sweep tool on a simple water treatment system from the WaterTAP repository and show its parallel scaling performance on an Apple laptop and NREL's Eagle HPC. The parameter sweep tool is actively being used with models currently being developed within WaterTAP and we expect its use to grow beyond it to other IDAES and Pyomo models.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2019

Pressure balance in a lower collisionality, attached tokamak scrape-off layer

Previously the gyrokinetic neoclassical code XGCa found that the pressure balance (or momentum balance) in the diverted scrape-off layer (SOL) does not follow that from the fluid description based on the Chew–Goldberger–Low (CGL) theory. In this paper a gyrocenter parallel momentum moment equation is derived for pressure balance (or momentum balance) in a tokamak SOL, for use in interpreting this difference. The new gyrocenter-fluid pressure balance equation allows identifying from the XGCa code results which physical processes dominate the setting of pressure variation in the scrape-off layer. This pressure balance equation is applied to the simulation of a DIII-D H-mode discharge, with a lower ion collisionality in the SOL, and the Coulomb and atomic collisions are not strong enough to yield a detached divertor plasma. It is found that the total pressure balance is much better matched using the gyrocenter parallel momentum moment equation. Electrons are shown to be dominantly adiabatic, while ions have multiple contributions to pressure balance, including terms originating from particle drifts. Furthermore, these results show that in strong gradient, low collisionality regions of the SOL, the typical fluid reductions miss important effects captured in the gyrokinetic model.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗
DOE OSTI2023

Efficient multi-scale representation of visual objects using a biologically plausible spike-latency code and winner-take-all inhibition

Deep neural networks have surpassed human performance in key visual challenges such as object recognition, but require a large amount of energy, computation, and memory. In contrast, spiking neural networks (SNNs) have the potential to improve both the efficiency and biological plausibility of object recognition systems. Here we present a SNN model that uses spike-latency coding and winner-take-all inhibition (WTA-I) to efficiently represent visual stimuli using multi-scale parallel processing. Mimicking neuronal response properties in early visual cortex, images were preprocessed with three different spatial frequency (SF) channels, before they were fed to a layer of spiking neurons whose synaptic weights were updated using spike-timing-dependent-plasticity. We investigate how the quality of the represented objects changes under different SF bands and WTA-I schemes. We demonstrate that a network of 200 spiking neurons tuned to three SFs can efficiently represent objects with as little as 15 spikes per neuron. Furthermore, studying how core object recognition may be implemented using biologically plausible learning rules in SNNs may not only further our understanding of the brain, but also lead to novel and efficient artificial vision systems.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2021

Adaptive Mesh Refinement for Parallel in Time Methods

The project applied the multigrid-reduction-in-time (MGRIT) algorithm to an existing sub-cycled adaptive mesh refinement (AMR) code to investigate the performance of flows dominated by inertial physics. Previous work demonstrated good performance from MGRIT+AMR applied to flows dominated by diffusive physics. Consistent with previous experience, inertial physics negatively affected convergence rates and performance. Efforts to circumvent this issue by appealing to the physics of turbulence were investigated. It has been demonstrated that scales can be effectively transferred between multigrid levels for a turbulent flow resulting in a) partial convergence observed and b) nearly identical results to sequential time-stepping. Performance improvements have not yet been demonstrated - attempts at coarsening the grid on coarser MG levels compromises the solution quality and leads to divergence. This report summarize the accomplishments for the time-frame from 10/5/2020 to 12/31/2020 with an informal no-cost-extension to 05/20/2021

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2023

Effect of neutral interactions on parallel transport and blob dynamics in gyrokinetic scrape-off layer simulations

The effect of neutral interactions on scrape-off layer (SOL) turbulence is investigated in a continuum gyrokinetic code that has been coupled to a continuum kinetic model of neutral transport. This extends the work of a previous paper, which compared two NSTX SOL simulations in simple helical geometry, one with neutrals and one without. The former included electron-impact ionization, charge exchange, and wall recycling. Here, the case with neutrals is compared to a gyrokinetic-only simulation that includes an effective ionization source to separate the effect of sourcing from charge exchange collisions. It is observed that sourcing accounts for many features of the simulated SOL with neutrals, including density and temperature magnitudes and reduced normalized density fluctuations, but differences persist. In particular, a flatter density profile results due to changes in parallel transport when neutral collisions are included, illustrating the importance of neutral drag on global plasma properties. An analysis of coherent turbulent structures, or blobs, in these simulations demonstrates the case with neutrals has slower and larger blobs. Here, a series of seeded blob simulations corroborates the blob velocity observation. In general, the blob motion does not contribute significantly to radial transport in these simulations.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗
DOE OSTI2025

Orbit-averaging and deposition accuracy for runaway electron beams in hybrid kinetic-MHD simulations of the runaway plateau

We develop a new procedure that combines the kinetic orbit runaway electron code (KORC) and the NIMROD extended-magnetohydrodynamic code to simulate runaway electrons (REs) in the post-disruption plateau. KORC integrates guiding-center orbits, with a barycentric-based binary search strategy providing initial guesses for the Newton–Raphson logical-to-physical coordinate inversion, ensuring reliable particle-to-mesh mapping in NIMROD, whose fields remain static for the present study. Samples are drawn in accord with experimental parallel current profiles of RE beams during the plateau phase. Deposition in NIMROD is verified through comparison with a Python-based finite-element code that ensures periodicity in the poloidal direction and continuity at the magnetic axis. Accurate representation of near-axis fields requires finer mesh resolution to prevent under- and overshoots in current density from orbit inaccuracies. Yet, at a fixed particle count, increasing mesh resolution amplifies statistical noise in the deposited fields. An orbit-averaging method accumulates partial current deposits over multiple kinetic steps and reduces the statistical noise with little added computational cost. By coupling kinetic routines from KORC directly into the NIMROD codebase, these developments lay essential groundwork for future self-consistent KORC–NIMROD coupling.

Algorithms and data structure↗
DOE OSTI2022

Ion temperature anisotropy model with cross‐field drifts in the scrape‐off layer

Abstract An ion temperature anisotropy model including cross‐field drifts has been implemented in the 2D transport code UEDGE. Two ion temperature equations are solved in the model to give separate ion temperatures perpendicular and parallel to the magnetic field, which results in an additional mirror force for ion parallel transport and also leads to an additional curvature drift in the perpendicular direction. In our previous work, an ion temperature anisotropy model was implemented and applied to the full 2D version of UEDGE including recycled neutrals. The simulation results showed that the mirror force due to anisotropy reduces ion parallel flow velocity, however, the simulations were presented without cross‐field electric and magnetic drifts. Nevertheless, in present medium‐size tokamaks or future compact fusion devices, cross‐fields are important. In this work, the anisotropy model is extended to be compatible with the inclusion of cross‐field drifts. Preliminary results on comparison between the model solutions with and without cross‐field drifts are presented.

Zhao, Menglong↗
DOE OSTI2019

Counting Kmers for Biological Sequences at Large Scale

Counting the abundance of all the distinct kmers in biological sequence data is a fundamental step in bioinformatics. These applications include de novo genome assembly, error correction, etc. With the development of sequencing technology, the sequence data in a single project can reach Petabyte-scale or Terabyte-scale nucleotides. Counting demand for the abundance of these sequencing data is beyond the memory and computing capacity of single computing node, and how to process it efficiently is a challenge on a high-performance computing cluster. As such, we propose SWAPCounter, a highly scalable distributed approach for kmer counting. This approach is embedded with an MPI streaming I/O module for loading huge data set at high speed, and a counting bloom filter module for both memory and communication efficiency. By overlapping all the counting steps, SWAPCounter achieves high scalability with high parallel efficiency. In this work, the experimental results indicate that SWAPCounter has competitive performance with two other tools on shared memory environment, KMC 2 , and MSPKmerCounter. Moreover, SWAPCounter also shows the highest scalability under strong scaling experiments. In our experiment on Cetus supercomputer, SWAPCounter scales to 32,768 cores with 79% parallel efficiency (using 2048 cores as baseline) when processing 4 TB sequence data of 1000 Genomes. The source code of SWAPCounter is publicly available at https://github.com/mengjintao/SWAPCounter.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2020

Separate Effects Validation for Subcooled Boiling in CTF

In 2010, the U.S. Department of Energy created its first Energy Innovation Hub, which is focused on developing high-fidelity and high-resolution modeling and simulation (M&S) tools for modeling of light water reactors (LWRs). This hub, the Consortium for Advanced Simulation of LWRs (CASL), has developed an LWR simulation tool called the Virtual Environment for Reactor Applications (VERA). The multi-physics capability of VERA is achieved through the coupling of single-physics codes, including CTF (the CASL version of Coolant Boiling in Rod Arrays— Three Field (COBRA-TF)), Michigan Parallel Characteristics Transport (MPACT), BISON, and Materials Performance and Optimization (MPO) Advanced Model for Boron Analysis (MAMBA). As part of its M&S efforts, CASL has identified various challenge problems, including Crud Induced Power Shift (CIPS), Crud-Induced Localized Corrosion (CILC), Pellet-Cladding Interaction (PCI), and Departure from Nucleate Boiling (DNB). This work addresses CASL milestone L2:VVI.P19.03, which focuses on uncertainty quantification of crud, which is relevant to both CIPS and CILC. This is achieved through an analysis and separate effects validation of the thermal hydraulic phenomenon known as subcooled boiling. As part of this work, various sources of experimental data are examined and compared to different options for empirical modeling of subcooled boiling. Through this analysis, a complete understanding of the underlying models and their implementation details are understood. A subset of these data are incorporated into a separate effects validation study of CTF. The Westinghouse Advanced Loop Tester (WALT) and Rohsenow experiments are modeled, and it is shown that the newly-implemented Gorenflo correlation is more accurate than the existing Chen and Thom correlations.

22 GENERAL STUDIES OF NUCLEAR REACTORS↗
DOE OSTI2019

HyperSpace

Machine learning (ML) models often contain numerous hyperparameters, free parameters that must be set before the models can be trained. As the number of model hyperparameters increases, their optimization becomes significantly more challenging as we face a combinatorial increase in potential model configurations. Similarly, there is an increased chance that our models’ hyperparameters interact in complex ways. HyperSpace allows a user to optimize complex machine learning algorithms based on their hyperparameters. HyperSpace works by parallelizing parameter search spaces, running Bayesian model based optimization (SMBO) over each of these spaces in parallel. It was designed to be as minimally invasive as possible such that very little change to existing code will be needed to get a user started.

Ramanathan, Arvind↗
DOE OSTI2019

A GPU-Accelerated Structurally-Symmetric Sparse Multifrontal Solver

In this poster, a GPU-accelerated sparse multifrontal solver for structurally symmetric matrices is described. The implementation is tested on the Summit supercomputer against the current version, which is parallelized via MPI and OpenMP on CPUs. The GPU-accelerated implementation achieves significant speedup from the original code.

Synk, Ryan↗
DOE OSTI2019

Parallel accelerated Custom Correlation Coefficient calculations for genomics applications

The massive quantities of genomic data being made available through gene sequencing techniques are enabling breakthroughs in genomic science in many areas such as medical advances in the diagnosis and treatment of diseases. Analyzing this data, however, is a computational challenge insofar as the computational costs of the relevant algorithms can grow with quadratic, cubic or higher complexity—leading to the need for leadership scale computing. In this paper we describe a new approach to calculations of the Custom Correlation Coefficient (CCC) between Single Nucleotide Polymorphisms (SNPs) across a population, suitable for parallel systems equipped with graphics processing units (GPUs) or Intel Xeon Phi processors. We describe the mapping of the algorithms to accelerated processors, techniques used for eliminating redundant calculations due to symmetries, and strategies for efficient mapping of the calculations to many-node parallel systems. Results are presented demonstrating high per-node performance and near-ideal parallel scalability with rates of more than nine quadrillion (9 × 10 15 ) elementwise comparisons achieved per second with the latest optimized code on the ORNL Titan system, this being orders of magnitude faster than rates achieved using other codes and platforms as reported in the literature. Also it is estimated that as many as 90 quadrillion (90 × 10 15 ) comparisons per second may be achievable on the upcoming ORNL Summit system, an additional 10X performance increase. Finally, in a companion paper we describe corresponding techniques applied to calculations of the Proportional Similarity metric for comparative genomics applications.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2020

PRISMS-PF: A general framework for phase-field modeling with a matrix-free finite element method

Abstract A new phase-field modeling framework with an emphasis on performance, flexibility, and ease of use is presented. Foremost among the strategies employed to fulfill these objectives are the use of a matrix-free finite element method and a modular, application-centric code structure. This approach is implemented in the new open-source PRISMS-PF framework. Its performance is enabled by the combination of a matrix-free variant of the finite element method with adaptive mesh refinement, explicit time integration, and multilevel parallelism. Benchmark testing with a particle growth problem shows PRISMS-PF with adaptive mesh refinement and higher-order elements to be up to 12 times faster than a finite difference code employing a second-order-accurate spatial discretization and first-order-accurate explicit time integration. Furthermore, for a two-dimensional solidification benchmark problem, the performance of PRISMS-PF meets or exceeds that of phase-field frameworks that focus on implicit/semi-implicit time stepping, even though the benchmark problem’s small computational size reduces the scalability advantage of explicit time-integration schemes. PRISMS-PF supports an arbitrary number of coupled governing equations. The code structure simplifies the modification of these governing equations by separating their definition from the implementation of the numerical methods used to solve them. As part of its modular design, the framework includes functionality for nucleation and polycrystalline systems available in any application to further broaden the phenomena that can be used to study. The versatility of this approach is demonstrated with examples from several common types of phase-field simulations, including coarsening subsequent to spinodal decomposition, solidification, precipitation, grain growth, and corrosion.

36 MATERIALS SCIENCE↗
DOE OSTI2021

Enabling particle applications for exascale computing platforms

The Exascale Computing Project (ECP) is invested in co-design to assure that key applications are ready for exascale computing. Within ECP, the Co-design Center for Particle Applications (CoPA) is addressing challenges faced by particle-based applications across four “sub-motifs”: short-range particle–particle interactions (e.g., those which often dominate molecular dynamics (MD) and smoothed particle hydrodynamics (SPH) methods), long-range particle–particle interactions (e.g., electrostatic MD and gravitational N-body), particle-in-cell (PIC) methods, and linear-scaling electronic structure and quantum molecular dynamics (QMD) algorithms. Our crosscutting co-designed technologies fall into two categories: proxy applications (or “apps”) and libraries. Proxy apps are vehicles used to evaluate the viability of incorporating various types of algorithms, data structures, and architecture-specific optimizations and the associated trade-offs; examples include ExaMiniMD, CabanaMD, CabanaPIC, and ExaSP2. Libraries are modular instantiations that multiple applications can utilize or be built upon; CoPA has developed the Cabana particle library, PROGRESS/BML libraries for QMD, and the SWFFT and fftMPI parallel FFT libraries. Success is measured by identifiable “lessons learned” that are translated either directly into parent production application codes or into libraries, with demonstrated performance and/or productivity improvement. The libraries and their use in CoPA’s ECP application partner codes are also addressed.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2023

Two-link Staggered Quark Smearing in QUDA

Gauge covariant smearing based on the 3D lattice Laplacian can be used to create extended operators that have better overlap with hadronic ground states. For staggered quarks, we make use of two-link parallel transport to preserve taste properties. We have implemented the procedure in QUDA. We present the performance of this code on the NVIDIA A100 GPUs in Indiana University's Big Red 200 supercomputer and on the AMD MI250X GPUs in Oak Ridge Leadership Computer Facility's (OLCF's) Crusher and discuss its scalability. We also study the performance improvement from using NVSHMEM on OLCF's Summit. Reusing precomputed two-link products for all sources and sinks, it reduces the total smearing time for a baryon correlator measurement by a factor of 100-120 as compared with the original MILC code and reduces the overall time by 60-70%.

Gottlieb, Steven↗
DOE OSTI2020

Reconstruction for Liquid Argon TPC Neutrino Detectors Using Parallel Architectures.

Neutrinos are particles that interact rarely, so identifying them re-quires large detectors which produce lots of data. Processing this data with thecomputing power available is becoming more dicult as the detectors increasein size to reach their physics goals. In liquid argon time projection chambers(TPCs) the charged particles from neutrino interactions produce ionization elec-trons which drift in an electric field towards a series of collection wires, and thesignal on the wires is used to reconstruct the interaction. The MicroBooNEdetector currently collecting data at Fermilab has 8000 wires, and planned fu-ture experiments like DUNE will have 100 times more, which means that thetime required to reconstruct an event will scale accordingly. Modernization ofliquid argon TPC reconstruction code, including vectorization, parallelizationand code portability to GPUs, will help to mitigate these challenges. The liquidargon TPC hit finding algorithm within theLArSoftframework used acrossmultiple experiments has been vectorized and parallelized. This increases thespeed of the algorithm on the order of ten times within a standalone version onIntel architectures. This new version has been incorporated back intoLArSoftso that it can be generally used. These methods will also be applied to otherlow-level reconstruction algorithms of the wire signals such as the deconvolu-tion. The applications and performance of this modernized liquid argon TPCwire reconstruction will be presented.

Berkman, Sophie↗
DOE OSTI2024

A gyrokinetic simulation model for 2D equilibrium potential in the scrape-off layer of a field-reversed configuration

The equilibrium potential structure in the scrape-off layer (SOL) of the field-reversed configuration (FRC) can be affected by the penetration of edge biasing applied at the divertor ends. The primary focus of the paper is to establish a formulation that accurately captures both parallel and radial variations of the two-dimensional (2D) potential in SOL. The formulation mainly describes a quasi-neutral plasma with a logical sheath boundary. A full-f gyrokinetic ion model and a massless electron model are implemented in the GTC-X code to solve for the self-consistent equilibrium potential, given fixed radial potential profiles at the boundaries. The first essential point of this 2D model lies in its ability to couple radial and parallel dynamics stemming from resistive currents and drag force on ions. The model successfully recovers the fluid force balance and continuity equations. These collisional effects on 2D potential mainly appear through the density profile changes, modifying the potential through electron pressure gradient. This means an accurate prescription of electron density and temperature profiles is important in predicting the potential structure in the FRC SOL. The Debye sheath potential and the potential profiles applied at the boundaries can be additional factors contributing to the 2D variations in SOL. This comprehensive full-f scheme holds promise for future investigations into turbulent transport in the presence of the self-consistent 2D potential together with the non-Maxwellian distributions and open boundary conditions in the FRC SOL.

Physics↗
DOE OSTI2020

An accelerated approach to inline non-LTE modeling

A goal across many physics and engineering disciplines is to use radiation-hydrodynamics codes to accurately simulate systems that are expected to deviate from local thermodynamic equilibrium (LTE), such as laser-driven hohlraums, stellar coronae, and supernova ejecta. The computational expense of traditional non-LTE (NLTE) opacity calculations can dominate the cost of simulating these systems and render NLTE physics untenable in most cases. In this paper, we present a new parallel implementation for NLTE opacity calculations that employs advanced load balancing, vectorization, and memory management to significantly reduce the computational costs of these calculations. Using the radiation-hydrodynamics code xRAGE , we demonstrate this new implementation on three test problems and present order-of-magnitude speed improvements.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗