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At least 505 records · Page 28

Degradation of Bunker C Fuel Oil by White-Rot Fungi in Sawdust Cultures Suggests Potential Applications in Bioremediation

Fungal lignocellulolytic enzymes are promising agents for oxidizing pollutants. This study investigated degradation of Number 6 “Bunker C” fuel oil compounds by the white-rot fungi Irpex lacteus, Trichaptum biforme, Phlebia radiata, Trametes versicolor, and Pleurotus ostreatus (Basidiomycota, Agaricomycetes). Averaging across all studied species, 98.1%, 48.6%, and 76.4% of the initial Bunker C C10 alkane, C14 alkane, and phenanthrene, respectively were degraded after 180 days of fungal growth on pine media. This study also investigated whether Bunker C oil induces changes in gene expression in the white-rot fungus Punctularia strigosozonata, for which a complete reference genome is available. After 20 days of growth, a monokaryon P. strigosozonata strain degraded 99% of the initial C10 alkane in both pine and aspen media but did not affect the amounts of the C14 alkane or phenanthrene. Differential gene expression analysis identified 119 genes with ≥ log 2 (2- fold) greater expression in one or more treatment comparisons. Six genes were significantly upregulated in media containing oil; these genes included three enzymes with potential roles in xenobiotic biotransformation. Carbohydrate metabolism genes showing differential expression significantly accumulated transcripts on aspen vs. pine substrates, perhaps reflecting white-rot adaptations to growth on hardwood substrates. The mechanisms by which P. strigosozonata may degrade complex oil compounds remain obscure, but degradation results of the 180-day cultures suggest that diverse white-rot fungi have promise for bioremediation of petroleum fuels.

09 BIOMASS FUELS↗

SUMO Target Tree Info

Information regarding species, plot, treatment, chamber, tree height, and canopy diameter associated with each Tree_ID for use with all other raw data files. The Los Alamos Survival-Mortality experiment (SUMO) is located on Frijoles Mesa near Los Alamos, New Mexico, USA, at an elevation of 2150 m. The experiment is located in a pinon-juniper woodland near the ponderosa pine (Pinus ponderosa) forest ecotone. The tree community at SUMO is dominated by pinon pine (Pinus edulis Engelm.) and one-seed juniper (Juniperus monosperma (Engelm.) Sarg.) with Gambel oak (Quercus gambelli Nutt.), and the occasional ponderosa pine (Pinus ponderosa Douglas ex C.Lawson). Soils are Hackroy clay loam and range in depth from 40 to 80 cm above a parent material of volcanic tuff. Data released by Los Alamos National Lab for public use under LA-UR-18-23656.Update 4/7/2022: added tree height and canopy diameter

54 ENVIRONMENTAL SCIENCES↗

AmeriFlux CA-SF3 Saskatchewan - Western Boreal, forest burned in 1998.

This is the AmeriFlux version of the carbon flux data for the site CA-SF3 Saskatchewan - Western Boreal, forest burned in 1998.. Site Description - The 1998 burn site (F98) was in the east part of Prince Albert National Park, Saskatchewan, in the Waskesiu Fire, ignited by lightning that burned about 1700 ha in July 1998. The pre-fire forest consisted of jack pine and black spruce stands, with some intermixed aspen. The fire was severe, consuming much of the top layer of organic soil and killing all trees. In 2001, much of the regenerating vegetation consisted of aspen saplings about 1 m tall and shorter jack pine and black spruce seedlings. An overstory of dead, leafless jack pine trees dominated at a height of 18 m. Sparse grass and herbs, such as fireweed (Epilobium angustifolium L.) covered the ground. There were a large number of fallen dead trees, mostly perched above the ground and not decomposing quickly.

Amiro, Brian↗

AmeriFlux US-Dix Fort Dix

This is the AmeriFlux version of the carbon flux data for the site US-Dix Fort Dix. Site Description - The Fort Dix site is located in the upland forests of the New Jersey Pine Barrens, the largest continuous forested landscape on the Northeastern coastal plain. Upland forests occupy 62% of the 1.1 million acre Pine Barrens and can be divided into three dominant stand types, Oak/Pine (19.1%), Pine/Oak (13.1%), and Pitch Pine/Scrub oak (14.3%). The majority of mature upland forests are the product of regeneration following late 19th century logging and charcoaling activities. Gypsy moths first appeared in the Pine Barrens of New Jersey in 1966. Since the time of arrival, the upland forest stands have undergone several episodes of defoliation, the most significant occurred in 1972, 1981, and 1990. In recent years, the overstory oaks and understory oaks and shrubs of the Fort Dix stand, underwent two periods of defoliation by Gypsy moth, in 2006 and 2007. During these two years, maximum leaf area reached only 70% of the 2005 summer maximum.

Clark, Kenneth↗

AmeriFlux US-NC2 NC_Loblolly Plantation

This is the AmeriFlux version of the carbon flux data for the site US-NC2 NC_Loblolly Plantation. Site Description - The North Carolina Loblolly Pine site is located in a pine plantation amongst the mixed forests of the North Carolina lower coastal plain. During the late 19th and early 20th centuries the region was logged extensively. After a series of clearcuts, the land was transformed for agricultural practices. In 1967 and 1969, 4000 ha was sold to the Weyerhauser company for agriculture, preservation, and commercial logging of loblolly pines in a series of plantations. The fifth rotation stand surrounding the tower was established in 1992. The only significant natural disturbances during the measurement period was a severe drought that spanned the entire duration of the 2007 growing season. Consequently, the 2007 total amount of precipitation was 486 mm below the 30-year norm. In the same year, the plantation was thinned and fertilized. The stand was thinned in Oct 2009. The eastern half of the site was fertilized in January 2011, and the entire site was fertilized in October 2012.

Noormets, Asko↗

AmeriFlux FLUXNET-1F US-Dix Fort Dix

This is the AmeriFlux Management Project (AMP) created FLUXNET-1F version of the carbon flux data for the site US-Dix Fort Dix. This is the FLUXNET version of the carbon flux data for the site US-Dix Fort Dix produced by applying the standard ONEFlux (1F) software. Site Description - The Fort Dix site is located in the upland forests of the New Jersey Pine Barrens, the largest continuous forested landscape on the Northeastern coastal plain. Upland forests occupy 62% of the 1.1 million acre Pine Barrens and can be divided into three dominant stand types, Oak/Pine (19.1%), Pine/Oak (13.1%), and Pitch Pine/Scrub oak (14.3%). The majority of mature upland forests are the product of regeneration following late 19th century logging and charcoaling activities. Gypsy moths first appeared in the Pine Barrens of New Jersey in 1966. Since the time of arrival, the upland forest stands have undergone several episodes of defoliation, the most significant occurred in 1972, 1981, and 1990. In recent years, the overstory oaks and understory oaks and shrubs of the Fort Dix stand, underwent two periods of defoliation by Gypsy moth, in 2006 and 2007. During these two years, maximum leaf area reached only 70% of the 2005 summer maximum.

Clark, Kenneth↗

AmeriFlux FLUXNET-1F CA-SF3 Saskatchewan - Western Boreal, forest burned in 1998

This is the AmeriFlux Management Project (AMP) created FLUXNET-1F version of the carbon flux data for the site CA-SF3 Saskatchewan - Western Boreal, forest burned in 1998. This is the FLUXNET version of the carbon flux data for the site CA-SF3 Saskatchewan - Western Boreal, forest burned in 1998 produced by applying the standard ONEFlux (1F) software. Site Description - The 1998 burn site (F98) was in the east part of Prince Albert National Park, Saskatchewan, in the Waskesiu Fire, ignited by lightning that burned about 1700 ha in July 1998. The pre-fire forest consisted of jack pine and black spruce stands, with some intermixed aspen. The fire was severe, consuming much of the top layer of organic soil and killing all trees. In 2001, much of the regenerating vegetation consisted of aspen saplings about 1 m tall and shorter jack pine and black spruce seedlings. An overstory of dead, leafless jack pine trees dominated at a height of 18 m. Sparse grass and herbs, such as fireweed (Epilobium angustifolium L.) covered the ground. There were a large number of fallen dead trees, mostly perched above the ground and not decomposing quickly.

Amiro, Brian [University of Manitoba; Canadian For↗

AmeriFlux FLUXNET-1F US-NC2 NC_Loblolly Plantation

This is the AmeriFlux Management Project (AMP) created FLUXNET-1F version of the carbon flux data for the site US-NC2 NC_Loblolly Plantation. This is the FLUXNET version of the carbon flux data for the site US-NC2 NC_Loblolly Plantation produced by applying the standard ONEFlux (1F) software. Site Description - The North Carolina Loblolly Pine site is located in a pine plantation amongst the mixed forests of the North Carolina lower coastal plain. During the late 19th and early 20th centuries the region was logged extensively. After a series of clearcuts, the land was transformed for agricultural practices. In 1967 and 1969, 4000 ha was sold to the Weyerhauser company for agriculture, preservation, and commercial logging of loblolly pines in a series of plantations. The fifth rotation stand surrounding the tower was established in 1992. The only significant natural disturbances during the measurement period was a severe drought that spanned the entire duration of the 2007 growing season. Consequently, the 2007 total amount of precipitation was 486 mm below the 30-year norm. In the same year, the plantation was thinned and fertilized. The stand was thinned in Oct 2009. The eastern half of the site was fertilized in January 2011, and the entire site was fertilized in October 2012.

Noormets, Asko [Texas A&M University]↗

Exploratory Research - Using Volatile Organic Compounds to Separate Heterotrophic and Autotrophic Forest Soil Respiration

The initial focus of this project was to develop a method to partition soil respiration into its components (autotrophic, heterotrophic etc.) using the fingerprint of volatile organic compounds (VOCs) from soils. We were able to identify 63 different VOCs in our study; however, due to technical difficulties we were unable to take reliable measurements in order to test our hypotheses and develop this method. In the end, we changed the objectives of the project. Our new objectives were to characterize the effects of species and soil moisture regime on the composition of soil organic matter. We utilized the soils from the greenhouse experiment we had established for the soil VOC study and determined the lignin biomarker profiles of each of the treatments. We found that moisture had a significant effect on the carbon content of the soils with the low moisture treatments having higher carbon content than the high moisture treatments. We found that the relative yield of syringyl phenols (SP), ligin (Lig), and substituted fatty acids (SFA) were elevated in deciduous planted pots and reduced in conifer planted pots relative to plant-free treatments. Our results suggest nuttall oak preserved lignin and SFA, while loblolly pine lost lignin and SFA similarly to the plant free treatments. Since we did not find that the carbon concentrations of the soils were different between the species, nuttall oak probably replaced more native soil carbon than loblolly pine. This suggests that relative to loblolly pine, nuttall oak is a priming species. Since priming may impact soil carbon pools more than temperature or moisture, determining which species are priming species may facilitate an understanding of the interaction that land use and climate change may have on soil carbon pools.

54 ENVIRONMENTAL SCIENCES↗

Implications of Aerosol Physicochemical Properties Including Ice Nucleation at ARM Mega Sites for Improved Understanding of Microphysical Atmospheric Cloud Processes (Final Technical Report)

Continuous, long-term measurements of atmospheric ice-nucleating particles (INPs) that influence clouds and precipitation were conducted to investigate the abundance and variability of ground-level INPs across the world. Three field campaigns were organized by the DOE Atmospheric Radiation Measurement (ARM) program, including Examining INP from Southern Great Plains (ExINP-SGP, 2019), Examining INP from Eastern North Atlantic (ExINP-ENA, 2020 – 2021), and Examining INP from North Slope of Alaska (ExINP-NSA, 2021 – 2024). Additional small-scale supporting field experiments were performed in 2019 and 2021 to collect airborne particulate matter at SGP for complementary laboratory characterization of the particles’ physical and chemical properties [Aerosol-Ice Formation Closure Pilot Study (AEROICESTUDY), 2019; ExINP-SGP II, 2021]. In these studies, the PI’s team measured INP concentration with both real-time and laboratory measurements in a wide range of freezing temperatures ($T$ from 0 °C to about –30 °C). This project elucidated spatial variability and seasonality in the abundance of immersion mode active INPs across three ARM sites using a single instrument, a Portable Ice Nucleation Experiment (PINE) chamber version 03 (PINE-03 hereafter). Collocated aerosol and meteorological data were analyzed to assess the correlation between ambient INP abundance, air mass origin region, and meteorological variability. Our findings suggest very high freezing efficiency of INPs at the NSA site across the measured temperatures (ice nucleation active surface site density, $n_s(T)$, $\approx 2 \times 10^{8} - 10^{10}$ m -2 for from –16 to –31 °C), which is a factor of 10 – 1000 times greater efficiency as compared to that found in the previous mid-latitude INP measurements in autumn using the same instrument; surprisingly high INP abundance ($\ge 1 \text{ L}^{-1}$ at –25 °C) for the examined temperatures throughout the year that PINE-03 did not measure at other sites; and high INP concentration in spring, possibly related to arctic haze episodes.

58 GEOSCIENCES↗

An Engineered Laccase from Fomitiporia mediterranea Accelerates Lignocellulose Degradation

Laccases from white-rot fungi catalyze lignin depolymerization, a critical first step to upgrading lignin to valuable biodiesel fuels and chemicals. In this study, a wildtype laccase from the basidiomycete Fomitiporia mediterranea (Fom_lac) and a variant engineered to have a carbohydrate-binding module (Fom_CBM) were studied for their ability to catalyze cleavage of β-O-4′ ether and C–C bonds in phenolic and non-phenolic lignin dimers using a nanostructure-initiator mass spectrometry-based assay. Fom_lac and Fom_CBM catalyze β-O-4′ ether and C–C bond breaking, with higher activity under acidic conditions (pH < 6). The potential of Fom_lac and Fom_CBM to enhance saccharification yields from untreated and ionic liquid pretreated pine was also investigated. Adding Fom_CBM to mixtures of cellulases and hemicellulases improved sugar yields by 140% on untreated pine and 32% on cholinium lysinate pretreated pine when compared to the inclusion of Fom_lac to the same mixtures. Adding either Fom_lac or Fom_CBM to mixtures of cellulases and hemicellulases effectively accelerates enzymatic hydrolysis, demonstrating its potential applications for lignocellulose valorization. We postulate that additional increases in sugar yields for the Fom_CBM enzyme mixtures were due to Fom_CBM being brought more proximal to lignin through binding to either cellulose or lignin itself.

59 BASIC BIOLOGICAL SCIENCES↗

The Effect of Rapid Development on Soil CO2 Efflux in a Cellulosic Biofuel Stand

As awareness of climate change increases, the need for carbon neutral fuel sources is growing. Lignocellulosic biofuel derived from pine trees has been suggested as one potential energy source; however, it requires more research before its efficacy for climate change mitigation can be determined. Due to the large share of forest carbon held in soils and the extensive area of pine plantations in the southeast U.S., a better understanding of plantation soil carbon dynamics is critical for biofuel carbon accounting. This study evaluated the effects of canopy development and productivity on soil CO2 efflux, a proxy for soil respiration (Rs), in an intensively managed loblolly pine (Pinus taeda) stand over a period from May 2015 to December 2019. We found that leaf area index (LAI) and gross ecosystem production (GEP), as well as meteorological variables, had significant effects on Rs, but that both overall Rs and soil carbon pools did not increase over the course of the study. We thus hypothesize that GEP and LAI had intra-annual effects on Rs, and that the lack of change in Rs is the result of an increase in autotrophic respiration (Ra) that offset a decrease in decomposition of the previous stand’s organic matter.

09 BIOMASS FUELS↗

Multi-seasonal measurements of the ground-level atmospheric ice-nucleating particle abundance on the North Slope of Alaska

Atmospheric ice-nucleating particles (INPs) are an important subset of aerosol particles that are responsible for the heterogeneous formation of ice crystals. INPs modulate the arctic cloud phase (liquid vs. ice), resulting in implications for radiative feedbacks. The number of arctic INP studies investigating specific INP episodes or sources increased recently. However, existing studies are based on short-duration field data, and long-term datasets are lacking. Continuous, long-term measurements are key to determining the abundance and variability of ambient arctic INPs and constraining aerosol–cloud interactions, e.g., to verify and/or improve simulations of mixed-phase clouds. Here, we present a new long-duration INP dataset from the Arctic: 2 years of predominantly immersion-mode INP concentrations (n INP ) measured continuously at the National Oceanic and Atmospheric Administration's Barrow Atmospheric Baseline Observatory (BRW) on the North Slope of Alaska. A portable ice nucleation experiment chamber (PINE-03), which simulates adiabatic expansion cooling, was used to directly measure the ground-level INP abundance with an approximately 12 min time resolution from October 2021 to December 2023. We document PINE-03 n INP measurements as well as estimated ice nucleation active surface site density (n s ) over a wide range of heterogeneous freezing temperatures from −16 to −31 °C from which we introduce new season-specific parameterizations suitable for modeling mixed-phase clouds. Collocated aerosol and meteorological data were analyzed to assess the correlation between ambient n INP , air mass origin region, and meteorological variability. Our findings suggest (1) very high freezing efficiency of INPs across the measured temperatures (n s ≈ 2×10 8 –10 10 m −2 for −16 to −31 °C), which is a factor of 10–1000 times greater efficiency as compared to that found in the previous mid-latitude INP measurements in fall using the same instrument; (2) surprisingly high n INP (≥ 1 L −1 at −25 °C) for the examined temperatures throughout the year that were not measured by PINE-03 at other sites; and (3) high n INP in spring, possibly related to arctic haze episodes. Relatively low concentrations of aerosol surface area and contrasting high-INP concentrations at BRW relative to mid-latitude sites are the possible reasons for the observed high freezing efficiency.

54 ENVIRONMENTAL SCIENCES↗

Energetics of surface melt in West Antarctica

We use reanalysis data and satellite remote sensing of cloud properties to examine how meteorological conditions alter the surface energy balance to cause surface melt that is detectable in satellite passive microwave imagery over West Antarctica. This analysis can detect each of the three primary mechanisms for inducing surface melt at a specific location: thermal blanketing involving sensible heat flux and/or longwave heating by optically thick cloud cover, all-wave radiative enhancement by optically thin cloud cover, and föhn winds. We examine case studies over Pine Island and Thwaites glaciers, which are of interest for ice shelf and ice sheet stability, and over Siple Dome, which is more readily accessible for field work. During January 2015 over Siple Dome we identified a melt event whose origin is an all-wave radiative enhancement by optically thin clouds. During December 2011 over Pine Island and Thwaites glaciers, we identified a melt event caused mainly by thermal blanketing from optically thick clouds. Over Siple Dome, those same 2011 synoptic conditions yielded a thermal-blanketing-driven melt event that was initiated by an impulse of sensible heat flux and then prolonged by cloud longwave heating. The December 2011 synoptic conditions also generated föhn winds at a location on the Ross Ice Shelf adjacent to the Transantarctic Mountains, and we analyze this case with additional support from automatic weather station data. In contrast, a late-summer thermal blanketing period over Pine Island and Thwaites glaciers during February 2013 showed surface melt initiated by cloud longwave heating and then prolonged by enhanced sensible heat flux. One limitation thus far with this type of analysis involves uncertainties in the cloud optical properties. Nevertheless, with improvements this type of analysis can enable quantitative prediction of atmospheric stress on the vulnerable Antarctic ice shelves in a steadily warming climate.

54 ENVIRONMENTAL SCIENCES↗

Inventory of forest and rangeland resources, including forest stress

The author has identified the following significant results. Some current beetle-killed ponderosa pine can be detected on S190-B photography imaged over the Bear Lodge mountains in the Black Hills National Forest. Detections were made on SL-3 imagery (September 13, 1973) using a zoom lens microscope to view the photography. At this time correlations have not been made to all of the known infestation spots in the Bear Lodge mountains; rather, known infestations have been located on the SL-3 imagery. It was determined that the beetle-killed trees were current kills by stereo viewing of SL-3 imagery on one side and SL-2 on the other. A successful technique was developed for mapping current beetle-killed pine using MSS imagery from mission 247 flown by the C-130 over the Black Hills test site in September 1973. Color enhancement processing on the NASA/JSC, DAS system using three MSS channels produced an excellent quality detection map for current kill pine. More importantly it provides a way to inventory the dead trees by relating PCM counts to actual numbers of dead trees.

Heller, R. C.↗

Evaluation of the airborne imaging spectrometer for remote sensing of forest stand conditions

Five pairs of plots were established in forest stands with one of each pair trenched and covered to prevent precipitation from reaching the tree roots. High winds and falling limbs destroyed the covers on three of the plots. The two remaining plots were in a red pine plantation and in a natural stand of sugar maple. Trees in both plots developed levels of moisture stress more than nine bars higher than control trees on the dates of overflights with the Airborne Imaging Spectrometer (AIS) and the Collins' Airborne Spectroradiometer (CAS). Hemispherical reflectance from stressed and control trees was measured with a Beckman DK2A spectrophotometer. On the day of the AIS overflight, stressed maple foliage was less reflective than the control from 1000 to 1300 nm, but more reflective at wavelengths longer than 1300 nm. Pine foliage was less reflective than the control from 1000 to 1600 nm, but the difference was small at wavelengths longer than 1350 nm. AIS data collected showed brightness values for both maple and pine to be lower than for the controls from 1000 to 1300 nm. CAS data were used to determine the gain in species identification accuracy obtainable with high spectral resolution data.

Olson, Charles E., Jr.↗

Spectral changes in conifers subjected to air pollution and water stress: Experimental studies

The roles of leaf anatomy, moisture and pigment content, and number of leaf layers on spectral reflectance in healthy, pollution-stressed, and water-stressed conifer needles were examined experimentally. Jeffrey pine (Pinus jeffreyi) and giant sequoia (Sequoiadendron gigantea) were exposed to ozone and acid mist treatments in fumigation chambers; red pine (Pinus resinosa) needles were artificially dried. Infrared reflectance from stacked needles rose with free water loss. In an air-drying experiment, cell volume reductions induced by loss of turgor caused near-infrared reflectance (TM band 4) to drop after most free water was lost. Under acid mist fumigation, stunting of tissue development similarly reduced band 4 reflectance. Both artificial drying and pollutant fumigation caused a blue shift of the red edge of spectral reflectance curves in conifers, attributable to chlorophyll denaturation. Thematic mapper band ratio 4/3 fell and 5/4 rose with increasing pollution stress on artificial drying. Loss of water by air-drying, freeze-drying, or oven-drying enhanced spectral features, due in part to greater scattering and reduced water absorption. Grinding of the leaf tissue further enhanced the spectral features by increasing reflecting surfaces and path length. In a leaf-stacking experiment, an asymptote in visible and infrared reflectance was reached at 7-8 needle layers of red pine.

Westman, Walter E.↗

Seedling growth and development on space shuttle

Young pine seedlings, and mung bean and oat seeds were flown on shuttle flights, STS-3 and STS-51F, in March, 1982 and July/August, 1985, respectively. The plant growth units built to support the two experiments functioned mechanically as anticipated and provided the necessary support data. Pine seedlings exposed to the microgravity environment of the space shuttle for 8 days continued to grow at a rate similar to ground controls. Pine stems in flight seedlings, however, averaged 10 to 12% less lignin than controls. Flight mung beans grew slower than control beans and their stems contained about 25% less lignin than control seedlings. Reduced mung bean growth in microgravity was partly due to slower germination rate. Lignin also was reduced in flight oats as compared to controls. Oats and mung beans exhibited upward growing roots which were not observed in control seedlings. Chlorophyll A/B ratios were lower in flight tissues than controls. The sealed PGCs exhibited large variations in atmospheric gas composition but the changes were similar between flight and ground controls. Ethylene was present in low concentrations in all chambers.

Cowles, J.↗