SEARCH · Search NASA
Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.
Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.
Bacterial Nitrate Reduction by Paraburkholderia yinzercillus Contributes to Iron Bioremediation in Abandoned Coal Mine Drainage presentation given at the Gordon Research Conference on Renewable Energy: Solar Fuels Conference held February 4-9, 2024, in Ventura, California.
This presentation is titled ORNL Nuclear Data Evaluation Contribution to NCSP (ND-2). This lecture includes resonance evaluations, SAMMY fitting results, and resonance evaluation features. The presentation finishes with evaluations in alkaline earth-metals and halogens.
This work was performed by Virginia Tech in collaboration with multiple institutions led by Los Alamos National Laboratory as a part of the Tokamak Disruption Simulation SciDAC (Scientific Discovery through Advanced Computing) project supported jointly by the Department of Energy Office of Science and Ad- vanced Scientific Computing Research. This report summarizes Virginia Tech’s contributions to the Sci- DAC project. Virginia Tech researchers (presently University of Washington researchers) focused on the fundamental role of plasma-material interaction on transport, which could then have macroscopic effects on simulations of tokamak disruptions. The plasma sheath, which regulates plasma particle and energy fluxes to the wall, is an essential component in the study of plasma-material interaction (PMI). Understanding sheath theory by accounting for finite sheath thickness and transport in the vicinity of the sheath entrance can sig- nificantly modify typical assumptions that are made in the Bohm speed analysis, where the Bohm speed provides the lower bound of the plasma exit flow speed. Our work provides a modified Bohm speed formu- lation that accounts for the critical role of transport and for applications that are away from the asymptotic limits that are typically assumed.
63,65 Cu angular distributions resolved for ENDF/B-VIII.1, consistent with both differential data and integral benchmark performance. 139 La RRR and URR evaluations will be merged with the LANL high energy evaluation, and to be submitted to the future ENDF-B release (post-VIII.1). 14 N RRR evaluation is planned to produce n+ 14 N, p+ 14 C, and a+ 11 B contributions to be submitted to the future ENDF-B release (post-VIII.1). 181 Ta covariances repaired and reported as intended in an errata to ENDF/B-VIII.1.
We present the first calculation of next-to-leading order (NLO) factorized QED contributions to the short-distance hard coefficients of inclusive lepton-hadron deep inelastic scattering (DIS) in a joint QCD and QED factorization approach. We demonstrate how the joint factorization consistently factorize all perturbative collinear sensitivities of partonic scattering in both QCD and QED into corresponding universal hadron and lepton distribution functions without the need of any parameters other than the standard factorization scale. We discuss the necessary modification to DGLAP-type evolution of the parton and lepton distribution functions in this joint factorization approach. We also discuss the potential impact of this joint factorization approach on the extraction of partonic information from lepton-hadron DIS.
This Modeling Archive is in support of a TES-SFA publication “Biological Mechanisms May Contribute to Soil Carbon Saturation Patterns” (Craig et al., 2021). We ran and evaluated a multi-assumption soil organic carbon (SOC) model to investigate whether alternative assumptions regarding constraints on soil microbial biomass could lead to soil carbon saturation patterns. We developed this model in the Multi-Assumption Architecture and Testbed (MAAT, https://github.com/walkeranthonyp/MAAT, tag: v1.2.1_Craig2021; Walker et al. 2018). Using MAAT, we embedded three alternative hypotheses in a microbially explicit three-pool SOC model: 1) the efficiency of mineral-associated SOC formation decreases as mineral-associated SOC approaches a maximum value (“Mineral saturation”), 2) the microbial biomass turnover rate increases with increasing microbial biomass (“Density-dependent turnover”), and 3) community carbon use efficiency decreases as microbial biomass increases toward an upper limit (“Density-dependent growth”). We ran a factorial combination of these hypotheses resulting in eight models for three different classes of model (linear decay, Michaelis-Menten decay, or reverse Michaelis-Menten decay), resulting in 24 models, 12 of which are presented or discussed in the related publication. Models were parameterized using values from previous studies with similar models (Wang et al. 2013, Wieder et al. 2014, Li et al. 2014, Georgiou et al. 2017, Hassink and Whitmore 1997) and ran to an approximate steady state (200 years) at six (6) different C input rates corresponding to 0.5, 1, 2, 4, 7, and 10 times the default input value. Further model details are available in the related publication. This archive contains output from three MAAT simulations, and scripts to run these simulations and process and plot the data. Simulations are labeled “lin”, “MM_highKm”, and “RMM_highKm” reflecting factorial runs for linear, Michealis-Menten, and reverse Michaelis-Menten models, respectively. This archive contains: • 3 R scripts prepended with “init_MAAT_” to initialize runs (1 for each simulation), • 1 csv file containing years over which to run simulations (“met_year.csv”), • 1 bash script (.bs) to run MAAT, • 6 XML files that are output from MAAT describing a run (2 for each simulation), • 3 model output csv files prepended by “out_” (1 for each simulation), and • 1 analysis R script for reproducing figures 3 and 4 in Craig et al. 2021. See included user guide (Craig_2021_modeling_archive_20210315.pdf) for file organization details.
Bordetella bronchiseptica is a highly contagious respiratory bacterial veterinary pathogen. In this study the contribution of the transcriptional regulators BvgR, RisA, RisS, and the phosphorylation of RisA to global gene regulation, intracellular cyclic-di-GMP levels, motility, and biofilm formation were evaluated. Next Generation Sequencing (RNASeq) was used to differentiate the global gene regulation of both virulence-activated and virulence-repressed genes by each of these factors. The BvgAS system, along with BvgR, RisA, and the phosphorylation of RisA served in cyclic-di-GMP degradation. BvgR and unphosphorylated RisA were found to temporally regulate motility. Additionally, BvgR, RisA, and RisS were found to be required for biofilm formation.
The loading of copper (Cu) into cytochrome c oxidase (COX) in mitochondria is essential for energy production in cells. Extensive studies have been performed to characterize mitochondrial cuproenzymes that contribute to the metallation of COX, such as Sco1, Sco2, and Cox17. However, limited information is available on the upstream mechanism of Cu transport and delivery to mitochondria, especially through Cu-impermeable membranes, in mammalian cells. The mitochondrial phosphate transporter SLC25A3, also known as PiC2, binds Cu + and transports the ion through these membranes in eukaryotic cells, ultimately aiding in the metallation of COX. We used the well-established differentiation model of primary myoblasts derived from mouse satellite cells, wherein Cu availability is necessary for growth and maturation, and showed that PiC2 is a target of MTF1, and its expression is both induced during myogenesis and favored by Cu supplementation. PiC2 deletion using CRISPR/Cas9 showed that the transporter is required for proliferation and differentiation of primary myoblasts, as both processes are delayed upon PiC2 knock-out. The effects of PiC2 deletion were rescued by the addition of Cu to the growth medium, implying the deleterious effects of PiC2 knockout in myoblasts may be in part due to a failure to deliver sufficient Cu to the mitochondria, which can be compensated by other mitochondrial cuproproteins. Co-localization and co-immunoprecipitation of PiC2 and COX also suggest that PiC2 may participate upstream in the copper delivery chain into COX, as verified by in vitro Cu + -transfer experiments. These data indicate an important role for PiC2 in both the delivery of Cu to the mitochondria and COX, favoring the differentiation of primary myoblasts.
Irrigation can be a significant source of groundwater recharge in many agricultural regions, particularly in arid and semi-arid climates. Once infiltrated, irrigation recharge can travel via subsurface flowpaths that return to the river system in a lagged manner, supplementing natural streamflow weeks, months, or even years from when the irrigation was applied. In regions that experience low flows during summer and early fall, return flows can be a significant source of supplementary streamflow. Many water planning and operations models either ignore return flows or roughly approximate them with analytical solutions. Thus, return flows represent an important but often overlooked component of the hydrological exchange and overall water balance in agricultural regions. This study uses groundwater models to explore a wide range of factors that control irrigation return flow timing in irrigated alluvial valleys. A sensitivity analysis approach is used to assess how factors such as the extent of irrigated land adjacent to a stream, irrigation recharge rate, aquifer hydraulic conductivity, aquifer thickness, water table configuration, and seasonal fluctuations in stream stage control the timing of subsurface return flows. Modeling is conducted using MODFLOW models representing an irrigated alluvial valley adjacent to a stream. While a simplification of the full complexity in real systems, the models are a significant advancement from the analytical solution and provide new insight into the timescales of return flows over a broad range of possible conditions. To contextualize our modeling results, they are compared to an analytical solution commonly used for approximating return flows to evaluate its performance. Our findings show what factors and conditions influence return flow timing and control whether they contribute to streamflow over short term (months) or longer term (seasonal) time scales.
We discuss Peter Gary’s contributions to the understanding of the origin and properties of ultra-low frequency (ULF) waves in the Earth’s foreshock during the period when the International Sun Earth Explorer spacecraft (ISEE-1 and -2) provided unique data about the plasma and wave environment in this region. Peter’s work concerning the linear theory of electromagnetic ion beam instabilities is contained in five journal articles and then summarized in a review article, all of which are discussed here. Brief summaries of observations and theory prior to ISEE as well as to later work are also included.
Precision fertilization implies the need to identify the variability of soil fertility, which is costly and time-consuming. Remotely measured data can be a solution. Using this strategy, a study was conducted, in a vineyard, to delineate different management zones using two indicators: apparent soil electrical conductivity (ECa) and normalized difference vegetation index (NDVI). To understand the contribution of each indicator, three scenarios were used for zone definition: (1) using only NDVI, (2) only ECa, or (3) using a combination of the two. Then the differences in soil fertility between these zones were assessed using simple statistical methods. The results indicate that the most beneficial strategy is the combined use of the two indicators, as it allowed the definition of three distinct zones regarding important soil variables and crop nutrients, such as soil total nitrogen, Mg2+ cation, exchange acidity, and effective cation exchange capacity, and some relevant cation ratios. This strategy also allowed the identification of an ionic unbalance in the soil chemistry, due to an excess of Mg2+, that was harming crop health, as reported by NDVI. This also impacted ECa and NDVI relationship, which was negative in this study. Overall, the results demonstrate the advantages of using remotely sensed data, mainly more than one type of sensing data, and suggest a high potential for differential crop fertilization and soil management in the study area.
Drying and rewetting of soil stimulates soil carbon emission. The Birch effect, driven by these cycles, leads to CO2 efflux, which can be monitored using real-time mass spectrometry (RTMS). Although soil fungi retain water during droughts, their contribution to CO2 release during drying–rewetting cycles remains unclear. In this study, we present the first demonstration of integrating micromodels with RTMS to monitor the Birch effect by simulating drought and rewetting. Micromodels were inoculated with axenic fungal culture and dried to assess moisture retention. After drying, RTMS quantified CO2 release upon rewetting with H218O mixtures. Our results showed that soil fungi released CO2 upon rehydration and immediately utilized the external water source at the pore scale by generating subsequent 46CO2. This work is the first to integrate RTMS with microsystems to investigate pore-scale biogeochemistry and the involvement of fungi in the Birch effect.
In maize (Zea mays), fungal-elicited immune responses include the accumulation of terpene synthase (TPS) and cytochrome P450 monooxygenases (CYP) enzymes resulting in complex antibiotic arrays of sesquiterpenoids and diterpenoids, including α/β-selinene derivatives, zealexins, kauralexins and dolabralexins. To uncover additional antibiotic families, we conducted metabolic profiling of elicited stem tissues in mapping populations, which included B73 × M162W recombinant inbred lines and the Goodman diversity panel. Five candidate sesquiterpenoids associated with a chromosome 1 locus spanning the location of ZmTPS27 and ZmTPS8. Heterologous enzyme co-expression studies of ZmTPS27 in Nicotiana benthamiana resulted in geraniol production while ZmTPS8 yielded α-copaene, δ-cadinene and sesquiterpene alcohols consistent with epi-cubebol, cubebol, copan-3-ol and copaborneol matching the association mapping efforts. ZmTPS8 is an established multiproduct α-copaene synthase; however, ZmTPS8-derived sesquiterpene alcohols are rarely encountered in maize tissues. A genome wide association study further linked an unknown sesquiterpene acid to ZmTPS8 and combined ZmTPS8-ZmCYP71Z19 heterologous enzyme co-expression studies yielded the same product. To consider defensive roles for ZmTPS8, in vitro bioassays with cubebol demonstrated significant antifungal activity against both Fusarium graminearum and Aspergillus parasiticus. As a genetically variable biochemical trait, ZmTPS8 contributes to the cocktail of terpenoid antibiotics present following complex interactions between wounding and fungal elicitation.
Freshwater scarcity has raised concerns about the long-term availability of the water supplies within the transboundary Mesilla (United States)/Conejos-Médanos (Mexico) Basin in Texas, New Mexico, and Chihuahua. Analysis of legacy temperature data and groundwater flux estimates indicates that the region’s known geothermal systems may contribute more than 45,000 tons of dissolved solids per year to the shallow aquifer system, with around 8500 tons of dissolved solids being delivered from localized groundwater upflow zones within those geothermal systems. If this salinity flux is steady and eventually flows into the Rio Grande, it could account for 22% of the typical average annual cumulative Rio Grande salinity that leaves the basin each year—this salinity proportion could be much greater in times of low streamflow. Regional water level mapping indicates upwelling brackish waters flow towards the Rio Grande and the southern part of the Mesilla portion of the basin with some water intercepted by wells in Las Cruces and northern Chihuahua. Upwelling waters ascend from depths greater than 1 km with focused flow along fault zones, uplifted bedrock, and/or fractured igneous intrusions. Overall, this work demonstrates the utility of using heat as a groundwater tracer to identify salinity sources and further informs stakeholders on the presence of several brackish upflow zones that could notably degrade the quality of international water supplies in this developed drought-stricken region.
The diffuse ultraviolet background radiation has been mapped over most of the sky with 2′ resolution using data from the Galaxy Evolution Explorer survey. We utilize this map to study the correlation between the UV background and clusters of galaxies discovered via the Sunyaev–Zeldovich effect in the Planck survey. We use only high Galactic latitude (|b|>60{sup ∘}) galaxy clusters to avoid contamination by Galactic foregrounds, and we only analyze clusters with a measured redshift. This leaves us with a sample of 142 clusters over the redshift range of 0.02 ≤ z ≤ 0.72, which we further subdivide into four redshift bins. In analyzing our stacked samples binned by redshift, we find evidence for a central excess of UV background light compared to local backgrounds for clusters with z < 0.3. We then stacked these z < 0.3 clusters to find a statistically significant excess of 12 ± 2.3 photon cm{sup −2} s{sup −1} sr{sup −1} Å{sup −1} over the median of ∼380 photon cm{sup −2} s{sup −1} sr{sup −1} Å{sup −1} measured around random blank fields. We measure the stacked radial profile of these clusters, and find that the excess UV radiation decays to the level of the background at a radius of ∼1 Mpc, roughly consistent with the maximum radial extent of the clusters. Analysis of possible physical processes contributing to the excess UV brightness indicates that non-thermal emission from relativistic electrons in the intracluster medium and faint, unresolved UV emission from cluster member galaxies and intracluster light are likely the dominant contributors.
In 10 years of observations, the IceCube neutrino observatory has revealed a neutrino sky in tension with previous expectations for neutrino point-source emissions. Astrophysical objects associated with hadronic processes might act as production sites for neutrinos, observed as point sources at Earth. Instead, a nearly isotropic flux of astrophysical neutrinos is observed up to PeV energies, prompting a reassessment of the assumed transport and production physics. This work applies a new physical explanation for neutrino production from populations of active galactic nuclei and starburst galaxies to three years of public IceCube point-source data. Specifically, cosmic rays produced at such sources might interact with extragalactic background light and gas along the line of sight, generating a secondary neutrino flux. Furthermore, this model is tested alongside a number of typical flux weighting schemes, in all cases the all-sky flux contribution being constrained to percent levels of the reported IceCube diffuse astrophysical flux.
Ionization sources other than H ιι regions give rise to the right-hand branch in the standard ([N ιι]) BPT diagram, populated by Seyfert 2s and LINERs. However, because the majority of Seyfert/LINER hosts are star-forming (SF), H ιι regions contaminate the observed lines to some extent, making it unclear if the position along the branch is merely due to various degrees of mixing between pure Seyferts/LINERs and SF, or whether it reflects the intrinsic diversity of Seyfert/LINER ionizing sources. In this study, we empirically remove SF contributions in ~100,000 Seyferts/LINERs from SDSS using the doppelganger method. Here, we find that mixing is not the principal cause of the extended morphology of the observed branch. Rather, Seyferts/LINERs intrinsically have a wide range of line ratios. Variations in ionization parameter and metallicity can account for much of the diversity of Seyfert/LINER line ratios, but the hardness of the ionization field also varies significantly. Furthermore, our k -means classification on seven decontaminated emission lines reveals that LINERs are made up of two populations, which we call soft and hard LINERs. The Seyfert 2s differ from both types of LINERs primarily by higher ionization parameter, whereas the two LINER types mainly differ from each other (and from star-forming regions) in the hardness of the radiation field. We confirm that the [N ιι] BPT diagram more efficiently identifies LINERs than [S ιι] and [O ι] diagnostics, because in the latter many LINERs, especially soft ones, occupy the same location as pure starformers, even after the SF has been removed from LINER emission.
We constrain the emission mechanisms responsible for the prodigious electromagnetic output generated by active galactic nuclei (AGNs) and their host galaxies with a novel state-of-the-art AGN radio-to-X-ray spectral energy distribution model fitting code (ARXSED). ARXSED combines multiple components to fit the spectral energy distributions (SEDs) of AGNs and their host galaxies. Emission components include radio structures such as lobes and jets, infrared emission from the AGN torus, visible-to-X-ray emission from the accretion disk, and radio-to-ultraviolet emission from the host galaxy. Applying ARXSED to the radio SEDs of 20 3CRR quasars at 1 < z < 2 verifies the need for more than a simple power law when compact radio structures are present. The nonthermal emission contributes 91%–57% of the observed-frame 1.25 mm to 850 μm flux, and this component must be accounted for when using these wavelengths to estimate star formation properties. We predict the presence of strong radio-linked X-ray emission in more than half the sample sources. ARXSED estimates median (and the associated first and third quartile ranges) BH mass of ${2.9}_{1.7}^{6.0}\times {10}^{9}\,{M}_{\odot }$ , logarithm of Eddington ratio of $-{1.0}_{-1.2}^{-0.6}$ , and spin of ${0.98}_{0.94}^{0.99}$ for our sample. The inferred AGN torus and accretion disk parameters agree with those estimated from spectroscopic analyses of similar samples in the literature. We present the median intrinsic SED of the luminous radio-loud quasars at 1 < z ≲ 2; this SED represents a significant improvement in the way each component is modeled.