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This is a collection of spectral data files obtained from AMS flights over areas in and around Las Vegas and the Nevada National Security Site. These are being made available for anyone to analyze and compare results with those in the accompanying report. The data files are attached to the PDF as Excel CSV format files.
Climate assessment reports, such as the Intergovernmental Panel on Climate Change’s 5th assesment report [IPCC AR5; IPCC et al., 2014] or the United States National Climate Assessment [U.S. Global Change Research Program, 2014], increasingly rely on many-ensemble climate projections from fully-coupled Earth system models (ESM) to asses possible future climate states. ESM participate in a large set of Coupled Model Intercomparson Projects (CMIP) to better understand their models and the climate system, so that they may provide credible climate projections. However, fully participating in these intercomparison exercises represents an extremely large computational personnel burden for modeling centers [Eyring et al., 2016, Williams et al., 2016a]. However, there has been little attention within the climate modeling community paid to the in situ performance of ESMs up until now. Recently a computational performance model intercomparison project (CPMIP) for CMIP6 has begun [Balaji et al., 2017], but there has not yet been an effort to gather, process, and analyze the historical performance data that has been saved within archived log files from previous modeling efforts, nor the development of performance analysis system capable of providing detailed statistical analyses or visualizations of this performance data. Therefore, we’ve begun a joint effort to analyze the historical and current performance data on both GFDL and OLCF modeling systems. Here, we have developed a preliminary performance analysis system to captue, analyize, and visualize end-to-end in situ performance data and applied it to NOAA/GFDL’s post-processing system. Through the course of the project a number of performance improvements have been made, with the steps necessary to handle the expected volume of data (Big Data) likely to come out of the CMIP6 exercises (TB to PB) provided. We have also begun developing a statistical workload model that will allow modeling centers to determined their expected scientific throughput in the context of expected resource (computational and personnel) availability and accounting for typical workflow disruptions. This will allow them to develop a CMIP participation strategy and maximize their level of participation in the exercises. We expect this infrastructure, and the data it produces, to ultimately allow us to identify performance issues and workflow errors that exist across Earth system modeling centers, and possibly HPC modeling centers in general. Center-independent solutions to workflow or performance issues would help alleviate the computational burden for CMIP6+ modeling projects and should realize both labor and cost savings benefits throughout the CMIP community.
In high energy physics (HEP), analysis metadata comes in many forms—from theoretical cross-sections, to calibration corrections, to details about file processing. Correctly applying metadata is a crucial and often time-consuming step in an analysis, but designing analysis metadata systems has historically received little direct attention. Among other considerations, an ideal metadata tool should be easy to use by new analysers, should scale to large data volumes and diverse processing paradigms, and should enable future analysis reinterpretation. This document, which is the product of community discussions organised by the HEP Software Foundation, categorises types of metadata by scope and format and gives examples of current metadata solutions. Important design considerations for metadata systems, including sociological factors, analysis preservation efforts, and technical factors, are discussed. A list of best practices and technical requirements for future analysis metadata systems is presented. These best practices could guide the development of a future cross-experimental effort for analysis metadata tools.
Please note: The title of this version contains an updated title for the manuscript compared to the previous version of this dataset. This is only due to title updates during the peer review process for the manuscript. The zip file contains the scripts, functions, and source files for the manuscript titled "Using Neural Network Ensembles to Separate Ocean Biogeochemical and Physical Drivers of Phytoplankton Biogeography in Earth System Models." The manuscript has been submitted for peer review. Please consult the README file for information on the specifications of the files. These files may occasionally be updated to add annotations to the scripts to make them more user friendly and to correct any errors.
This 0.25m horizontal resolution digital elevation model (DEM) was developed from Airborne Laser Altimetry flown by Aerometric Inc, now known as Quantum Spatial, Inc. on July 12, 2013. One Mission was flown and the data jointly processed with LANL personnel to produce a 0.25m DEM covering a region approximately 2.8km wide and 12.4km long extending from the coast above North Salt Lagoon to south of Gas Well Road. This DEM encompasses a diverse range of hydrologic, geomorphic, geophysical and biological features typical of the Barrow Peninsula. Vertical accuracy at the 95% confidence interval was computed as 0.143m. The coordinate system, datum, and geoid for this DEM are UTM Zone 4N, NAD83 (2011), NAVD88 (GEOID09). This dataset includes a variety of file types.The Next-Generation Ecosystem Experiments: Arctic (NGEE Arctic), was a research effort to reduce uncertainty in Earth System Models by developing a predictive understanding of carbon-rich Arctic ecosystems and feedbacks to climate. NGEE Arctic was supported by the Department of Energy's Office of Biological and Environmental Research.The NGEE Arctic project had two field research sites: 1) located within the Arctic polygonal tundra coastal region on the Barrow Environmental Observatory (BEO) and the North Slope near Utqiagvik (Barrow), Alaska and 2) multiple areas on the discontinuous permafrost region of the Seward Peninsula north of Nome, Alaska.Through observations, experiments, and synthesis with existing datasets, NGEE Arctic provided an enhanced knowledge base for multi-scale modeling and contributed to improved process representation at global pan-Arctic scales within the Department of Energy's Earth system Model (the Energy Exascale Earth System Model, or E3SM), and specifically within the E3SM Land Model component (ELM).
The crystal structure of lubiprostone has been refined using synchrotron X-ray powder diffraction data, and optimized using density functional techniques. Lubiprostone crystallizes in space group P 1 (#1) with a = 9.02025(2), b = 10.72121(2), c = 12.32817(4) Å, α = 78.5566(2), β = 69.6858(2), γ = 77.3292(2)°, V = 1081.069(3) Å 3 , and Z = 2. The two independent molecules occur in an extended conformation, aligned approximately along the c -axis. The hydrophobic side chains are adjacent to each other, resulting in layers parallel to the ac plane. The two carboxylic acid groups form an eight-membered ring, resulting in dimers of the two independent molecules. Each hydroxyl group acts as a hydrogen bond donor to the ketone of the fused ring system. The powder pattern is included in the Powder Diffraction File™ as entry 00-066-1622.
COMMON is a tool for collecting, storing, and displaying critical information to facilitate analysis on Microsoft Windows based IT systems. COMMON was developed to provide insight into the IT infrastructure for operational radiation detection systems, but is applicable to most Windows-based operating systems and TCP/IP network components. The COMMON tool aggregates a host of important Windows Management Instrumentation (WMI) information and as well as network ping responses to provide valuable insight into the performance of the IT system. A unique feature is the creation of daily output files (JSON) from the data collected for off site evaluation by subject matter experts.
SADE is a software package for rapidly assembling analytic pipelines to manipulate data. The packages consists of the engine that manages the data and coordinates the movement of data between the tasks performing a function, a set of core libraries consisting of plugins that perform common tasks, and a framework to extend the system supporting the development of new plugins. Currently through configuration files, a pipeline can be defined that maps the routing of data through a series of plugins. Pipelines can be run in a batch mode or can process streaming data; they can be executed from the command line or run through a Windows background service. There currently exists over a hundred plugins, over fifty pipeline configurations, and the software is now being used by about a half-dozen projects.
A set of 24 protein structures/complexes from the SARS CoV-2 proteome and inputs prepared for simulation using the CHARMM36m forcefield in PDB and gromacs formats. Each system contains a pdb and gromacs top and related input files necessary for running a temperature replica-exchange simulation. In addition, we also include: charmm PSF files (generated from the gromacs topology), a list of temperatures at which replica-exchange simulations were done (tempRamp), example gromacs run input mdp files, and initial minimized structures where available (minimized.pdb).
This dataset contains submission files and raw output files from high-throughput DFT simulations to analyze the systemic errors in lattice constant, bulk moduli and formation energy predictions for a range of binary and ternary oxides using four exchange correlation functionals (LDA, PBE, PBEsol and vdW-DF-C09). This data was then used as the basis for employing materials informatics methods to predict the expected errors in the lattice constants of the studied compounds. Predicted errors were also used to better the DFT-predicted lattice parameters. Our results emphasize the link between the computed errors and the electron density and hybridization errors of a functional. In essence, these results provide “error bars” for choosing a functional for the creation of high-accuracy, high-throughput datasets as well as avenues for the development of XC functionals with enhanced performance, thereby enabling the accelerated discovery and design of new materials.
Contains datasets from experimental measurements that were used to validate Re Vision's Persistence PTO's efficiency and performance. These measurements were obtained using a dynamometer test bench setup. The data includes open-circuit voltage and loss measurements to validate machine characteristics, efficiency mapping tests to determine the generator's performance mapping, and efficiency mapping tests to determine the converter's efficiency over the feasible operating range. This data was collected between June 2023 and September 2023. The data was collected at the National Renewable Energy Laboratory's Flatirons Campus, Colorado, United States. The data was collected using NREL's 5-kW dynamometer test bench, equipped with a torque sensor and various voltage and current sensors fed to a dedicated data acquisition system. Units for the data are included in the data file headers for each data series. A text editor or spreadsheet software such as Excel is required to view the *.csv data. The data are also provided in *.mat files. To view data plots, a Matlab script with *.mat files are provided.
This dataset contains leaf-level flux and soil porewater concentration measurements of carbon dioxide (CO2) and methane (CH4 ) in plots in the footprint of Ameriflux sites US-LA2 and US-LA3. Leaf fluxes in US-LA2 were measured on patches dominated by Sagittaria lancifolia and co-dominated by Sagittaria lancifolia and Typha latifolia. In US-LA3, fluxes were measured from distinct Juncus roemerianus and Spartina alterniflora patches. The porewater concentrations were collected across a vertical profile (~50 cm depth) at centric locations within 25 m2 plots where we measured the leaf fluxes. US-LA3 included an additional set of measurements in open water spots. We aimed to evaluate differences in leaf fluxes and porewater pools of CO2 and CH4 of representative ecohydrological patches across a salinity gradient. We also used this dataset to help develop ELM-Wet, a more realistic representation of wetland carbon biogeochemical processes within the U.S. Department of Energy’s Energy Exascale Earth System Model (E3SM) Land Model version 1 (ELM v.1). The files can be opened with regular text editors or spreadsheet programs. Version 2.0 (8/26/2025): This is the latest version of this dataset. The update includes additional samples of soil porewater CH4/CO2 concentrations from June-2021 to November-2022, as well as minor adjustments made to V1 samples via changing Henry's solubility to account for porewater salinity. Additionally leaf-level measurments of spectral indices, PSRI, NDVI, and PRI have been added to complement Leaf-level flux measurements. All V1 data sets have been integrated into V2 sheets, ensuring data from the previous version is contained with the additional samples and consistent with V2 metadata.
Nuclear data are necessary for reliable modeling and simulation of the next generation of nuclear reactors. However, the variation in the ratio of the computed to experimental values (C/E) for certain types of nuclear systems is much less than predicted by evaluated nuclear data file (ENDF)/B covariances. Figure 1 provides an example of a set of metal-plutonium-fueled, fast-spectrum (PU-MET-FAST) integral experiments from the International Criticality Safety Benchmark Evaluation Project (ICSBEP) in the Oak Ridge National Laboratory (ORNL) VALID database. The variation in the C/E values, shown with one standard deviation error bars, is 100% covered by both the SCALE and ENDB/VIII.0 covariance data. This is due to the comparisons to integral data that are essential during the evaluation process. However, the ENDF evaluations represent uncertainties and correlations in differential data only; they do not reflect the impact of the comparison to integral data in the covariance evaluations.
Nuclear data are necessary for reliable modeling and simulation of the next generation of nuclear reactors. However, the variation in the ratio of the computed to experimental values (C/E) for certain types of nuclear systems is much less than predicted by evaluated nuclear data file (ENDF)/B covariances. Figure 1 provides an example of a set of metal-plutonium-fueled, fast-spectrum (PU-MET-FAST) integral experiments from the International Criticality Safety Benchmark Evaluation Project (ICSBEP) in the Oak Ridge National Laboratory (ORNL) VALID database. The variation in the C/E values, shown with one standard deviation error bars, is 100% covered by both the SCALE and ENDB/VIII.0 covariance data. This is due to the comparisons to integral data that are essential during the evaluation process. However, the ENDF evaluations represent uncertainties and correlations in differential data only; they do not reflect the impact of the comparison to integral data in the covariance evaluations.
A radar wind profiler (RWP) data set collected during the 2-year Department of Energy Atmospheric Radiation Measurement (ARM) Observations and Modeling of the Green Ocean Amazon (GoAmazon2014/5) campaign is used to estimate vertical velocity, designate bulk meteorological echo classification (e.g., convective, stratiform), and provide calibrated radar reflectivity factor Z measurements (calibrated against collocated ground disdrometer and raingauge observations from T3). Additional fields include surface precipitation from rain gauge and ARM InterpolatedSonde streams utilized in the echo classification methods. This dataset follows methods established in Giangrande et al. [2013] and Giangrande et al. [2016] for informing on convective vertical velocities, mass flux and area coverage in Amazon convective cells from ARM RWP systems. If RWP datastreams were unavailable on a given date, files still contain raingauge and InterpolatedSonde information.
Nuclear data are necessary for reliable modeling and simulation of the next generation of nuclear reactors. However, the variation in the ratio of the computed to experimental values (C/E) for certain types of nuclear systems is much less than predicted by evaluated nuclear data file (ENDF)/B covariances. Figure 1 provides an example of a set of metal-plutonium-fueled, fast-spectrum (PU-MET-FAST) integral experiments from the International Criticality Safety Benchmark Evaluation Project (ICSBEP) in the Oak Ridge National Laboratory (ORNL) VALID database. The variation in the C/E values, shown with one standard deviation error bars, is 100% covered by both the SCALE and ENDB/VIII.0 covariance data. This is due to the comparisons to integral data that are essential during the evaluation process. However, the ENDF evaluations represent uncertainties and correlations in differential data only; they do not reflect the impact of the comparison to integral data in the covariance evaluations.
Scientists are increasingly turning to datacenter-scale computers to produce and analyze massive arrays. Despite decades of database research that extols the virtues of declarative query processing, scientists still write, debug and parallelize imperative HPC kernels even for the most mundane queries. This impedance mismatch has been partly attributed to the cumbersome data loading process; in response, the database community has proposed in situ mechanisms to access data in scientific file formats. Scientists, however, desire more than a passive access method that reads arrays from files. This paper describes ArrayBridge, a bi-directional array view mechanism for scientific file formats, that aims to make declarative array manipulations interoperable with imperative file-centric analyses. Our prototype implementation of ArrayBridge uses HDF5 as the underlying array storage library and seamlessly integrates into the SciDB open-source array database system. In addition to fast querying over external array objects, ArrayBridge produces arrays in the HDF5 file format just as easily as it can read from it. ArrayBridge also supports time travel queries from imperative kernels through the unmodified HDF5 API, and automatically deduplicates between array versions for space efficiency. Our extensive performance evaluation in NERSC, a large-scale scientific computing facility, shows that ArrayBridge exhibits statistically indistinguishable performance and I/O scalability to the native SciDB storage engine.
The U.S. Department of Energy’s Integrated Waste Management (IWM) program under the Office of Nuclear Energy is planning for the future transportation, storage, and eventual disposal of spent nuclear fuel (SNF) and high-level radioactive waste (HLW) from nuclear power plant sites across the United States. To better enable informed decision-making regarding the back end of the nuclear fuel cycle, the IWM program has been sponsoring the development and application of system analysis tools capable of analyzing various options for managing SNF and HLW. With these tools, integrated waste management system (IWMS) architecture analyses are being conducted to support the future deployment of a comprehensive nuclear waste management system that considers all major back-end aspects of the nuclear fuel cycle (i.e., transportation, storage, and disposal). System analyses and assessments typically use these modeling and simulation tools to investigate implications of changes in various assumptions and parameters such as acceptance rates, receipt logic, facility capacities and capabilities, use of standardized canisters, start and stop dates of facilities, etc. The Next Generation System Analysis Model (NGSAM) is an agent-based simulation toolkit that is used for a system-level simulation and analysis focused on SNF management in the United States. An analyst using NGSAM has the ability to define several factors like the number of storage facilities, capacity at each facility, transportation schedules, shipment rates, and other conditions. NGSAM’s primary purpose is to provide a system analyst with capabilities to model the IWMS and gain insights into SNF and HLW management alternatives including the impact of system choices, associated cost estimates, and development of integrated yet flexible approaches. IWM is also developing the Stakeholder Tool for Assessing Radioactive Transportation (START). START is a web-based geospatial tool developed to provide visualization and initial evaluation of transportation options associated with future SNF and HLW shipment planning and operations. This includes characterizing safety, economic, and environmental conditions on and in proximity to shipment origins as well as along prospective transportation routes. Information from the START tool can be presented/shared as maps, graphics, geospatial files, and tabular form to enable easy data representation and export functionality. The system analysis, NGSAM, and START teams had been working closely for several years before formalizing this collaboration. START provides the SNF routing information for use in NGSAM. System analysts use the NGSAM tool to generate results (schedule, costs, infrastructure acquisitions, shipment rates, etc.). Subject-matter experts and system analysts work together to inform how NGSAM should model the waste management system. Specifically, this paper discusses the collaborations between the system analysis, NGSAM, and START teams and their accomplishments over the past year. Some examples of these efforts include calibrating and adding data to the START output files to meet NGSAM needs, gaining a better understanding of START data used in NGSAM, as well as how updates in START data could result in an improved NGSAM analysis. Detailed examples of various tasks that have been performed by the team will be discussed in the full paper. Continued efforts in this direction are expected in the coming years.