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At least 523 records · Page 29

Mapping the Upper Subsurface of MARS Using Radar Polarimetry

Future human exploration of Mars will require detailed knowledge of the surface and upper several meters of the subsurface in potential landing sites. Likewise, many of the Planetary Science Decadal Survey science goals, such as understanding the history of Mars climate change, determining how the surface was altered through processes like volcanism and fluvial activity, and locating regions that may have been hospitable to life in the past, would be significantly advanced through mapping of the upper meters of the surface. Synthetic aperture radar (SAR) is the only remote sensing technique capable of penetrating through meters of material and imaging buried surfaces at high (meters to tens-of-meters) spatial resolution. SAR is capable of mapping the boundaries of buried units and radar polarimetry can provide quantitative information about the roughness of surface and subsurface units, depth of burial of stratigraphic units, and density of materials. Orbital SAR systems can obtain broad coverage at a spatial scale relevant to human and robotic surface operations. A polarimetric SAR system would greatly increase the safety and utility of future landed systems including sample caching.

Carter, L. M.↗

Height Error Correction for the New SRTM Elevation Product

The Shuttle Radar Topography Mission (SRTM), carrying a single-pass interferometric synthetic aperture radar(SAR) instrument, collected a global elevation data set, which has been widely used in scientific, military and commercial communities. In the new proposed NASA SRTM reprocessing task, the SRTM elevation data is going to be processed at higher spatial resolution and with improved height accuracy. Upon completion, the improved SRTM product will be freely available. This paper describes the calibration approaches for reduction of elevation ripple effects and height accuracy improvements.

Synthetic Aperture Radar Interferometry (InSAR)↗

Biomass Harmonization and SAR Analysis with the Multi-mission Algorithm and Analysis Platform (MAAP)

The Multi‐mission Algorithm and Analysis Platform (MAAP) is a collaborative effort between NASA and the European Space Agency (ESA) to support above ground biomass (AGB) research in an open science framework. MAAP brings together relevant data, algorithms, and computing capabilities in a common cloud environment to address the challenges of sharing and processing data from field, airborne and satellite measurements. MAAP was publicly released in October 2021, providing computing capabilities co-located with the data, a collaborative coding and analysis environment, and a set of interoperable tools and algorithms developed to support the estimation and visualization of data. MAAP has allowed scientists from both North America and Europe to collaborate on the generation and analysis/visualization of data derived from multiple, discipline-adjacent missions in an open, collaborative environment that has reached beyond traditional scientific investigation. MAAP has been used to support multiple scientific activities. To date, existing LiDAR data from multiple platforms has been calibrated with field measurements and combined for more comprehensive and accurate estimates of above ground biomass AGB; these LiDAR platforms include airborne (e.g. LVIS), the International Space Station (NASA’s Global Ecosystem Dynamics Investigation (GEDI), and satellites (e.g. ICESat-2). The current challenge is to effectively and seamlessly combine the aforementioned LiDAR-based data with new data sources such as P-band RADAR from ESA’s upcoming BIOMASS mission, existing ESA Sentinel-1 C-band SAR, and the 30 PB/yr of high cadence global coverage L-band SAR data from the upcoming NASA-ISRO SAR (NISAR) mission. Recent analysis using MAAP merged ICESat-2 and optical data (Harmonized Landsat Sentinel) produced the most comprehensively precise estimate of boreal-wide AGB to date. Another effort using MAAP is the production and open distribution of global comparisons of AGB map estimates, including from ICESat-2 and GEDI, to bolster stakeholder uptake for policy applications. These map estimates will feed into the Intergovernmental Panel on Climate Change (IPCC) database, likely aiding the next Global Carbon Stocktake of the UNFCCC. Furthermore, the biomass retrieval intercomparison exercise BRIX-2 could benefit from the MAAP providing standardized test cases (based on airborne campaign and spaceborne data) allowing the community to develop and apply retrieval algorithms based on these test cases, while forthcoming SAR data training curricula could also use the MAAP as a teaching and learning platform. The MAAP is meeting the challenges inherent in international, open science collaboration and large scale computing with a platform that is entirely open source and cloud native, using open standards for data access, manipulation, protocols, and formats. The MAAP data system consists of a dedicated data store whose data is indexed in an online catalog conforming to established metadata, application programmatic interfaces (APIs), and service interface standards, using an implementation of the open sourced NASA Common Metadata Repository. Federation of user identities allows users from either NASA or ESA to access and consume services from the other using a unified metadata catalog for the data utilized across the ESA and NASA MAAP platforms. Similarly, we are exploring how to increase interoperability to achieve a common approach to packaging, orchestrating and executing algorithms, with interoperable access to data for subsetting, fast browse, and cloud-optimized access, all using interoperable standards such as those from the Open Geospatial Consortium (OGC). Designed for interoperability, ESA and NASA utilize a common architecture for the software platform. It provides a cloud-based algorithm development environment (ADE) that enables scientists to develop algorithms collaboratively with access to the MAAP data catalog as well as other data archives. MAAP provides an Eclipse Che-based ADE supporting both Python and R languages, popular in this biomass community. Algorithms developed and containerized within the ADE can be deployed to run to thousands of computational nodes in the MAAP’s data processing system (DPS), dramatically speeding up processing and giving scientists a rapid, iterative turnaround of results. NASA’s implementation of the DPS is based on the Hybrid Science Data System (HySDS) framework, used by NASA flight projects to produce Earth science standard products.

cloud computing↗

Processing of KaRIn/SWOT Data

The Surface Water and Ocean Topography (SWOT) mission [1] is part of NASA’s Decadal Survey Program, and prepared jointly by NASA’s Jet Propulsion Laboratory (JPL), the French space agency (CNES), and the Canadian space agency (CSA). Launch is currently foreseen in 2020. The principal instrument KaRIn (Ka-band Radar Interferometer) would be a bistatic SAR system operating at Kaband, with 200 MHz bandwidth, covering 50 km wide near-nadir swaths (1-4° incidence) on both sides of the satellite track. The nominal payload also would include a conventional Ku/C-band nadir altimeter, a water vapor radiometer, and a precise orbit determination suite. Moreover, additional near-nadir channels from KaRIn to reduce the gap between the nominal swaths may be considered. The main mission goals would be to improve the spatio-temporal coverage of the oceans with respect to today’s nadir-looking altimeters (such as the Jason series), by providing measurements on a 1 km2 grid with virtually complete coverage up to ±78° latitude, while keeping a height precision of 1-2 cm, and to extend the altimetry measurements to continental water surfaces, including lakes, reservoirs and wetlands bigger than 250x250 m2 and rivers down to a width of 100 m (50 m as a goal), with a height precision of the order of 10 cm, represented with a horizontal point spacing of about 50 m. The fine scale of the measurements, with continuous acquisition over both oceans and continents, will result in huge data volumes, starting at the spacecraft and flowing through all links of the ground system. Furthermore, the centimetric height accuracy required means that all aspects of the processing must be considered carefully. In this article we give an overview of the foreseen data products and data processing chains for KaRIn on SWOT. Some particularly challenging processing steps are (will be) described in more detail.

Desroches, Damien↗

Electronic Interactions Between the Receptor-Binding Domain of Omicron Variants and Angiotensin-Converting Enzyme 2: A Novel Amino Acid–Amino Acid Bond Pair Concept

SARS-CoV-2 remains a severe threat to worldwide public health, particularly as the virus continues to evolve and diversify into variants of concern (VOCs). Among these VOCs, Omicron variants exhibit unique phenotypic traits, such as immune evasion, transmissibility, and severity, due to numerous spike protein mutations and the rapid subvariant evolution. These Omicron subvariants have more than 15 mutations in the receptor-binding domain (RBD), a region of the SARS-CoV-2 spike protein that is important for recognition and binding with the angiotensin-converting enzyme 2 (ACE2) human receptor. To address the impact of these high numbers of Omicron mutations on the binding process, we have developed a novel method to precisely quantify amino acid interactions via the amino acid–amino acid bond pair (AABP). We applied this concept to investigate the interface interactions of the RBD–ACE2 complex in four Omicron Variants (BA.1, BA.2, BA.5, and XBB.1.16) with its Wild Type counterpart. Based on the AABP analysis, we have identified all the sites that are affected by mutation and have provided evidence that unmutated sites are also impacted by mutation. We have calculated that the binding between RBD and ACE2 is strongest in OV BA.1, followed by OV BA.2, WT, OV BA.5, and OV XBB.1.16. We also present the partial charge values for all 311 residues across these five models. Our analysis provides a detailed understanding of changes caused by mutation in each Omicron interface complex.

Biochemistry & Molecular Biology↗

Orbital Imaging Radar and the Search for Water on Mars

The surface of Mars has been modified by a range of geologic processes, and many regions are mantled by varying depths of wind-blown dust, volcanic ash, and fluvially deposited or other water-lain sediments. We are proposing an orbital mission carrying a synthetic aperture radar (SAR) that can penetrate a significant depth of overlying material to reveal the detailed geomorphology as it relates to the changing fluvial, eolian, volcanic, and cratering history of Mars. Moreover, the data to be returned are of direct relevance to the search for past and present occurrences of liquid water, life, changing martian climate, and geologic history (e.g., origin of the northern plains, mechanisms for past and possible present valley formation, and genesis of widespread mantling deposits), the validation of potential landing sites for rover safety, and evaluation of sub-surface accessibility for drilling.

Campbell, B. A.↗

Roughness measurements with multipolarization aircraft data

Multipolarization SAR data were collected over the SIR-B target area near Fresno, California, a few days before the Shuttle flight. Attempts to use these data to evaluate roughness models were unsuccessful. It is speculated that the processing of those data to give good total swath and target contrast resulted in very little variation among the bare fields. Special processing to provide adequate contrast among the targets of interest and to account for a large incidence angle variation may be necessary to make these data useful for this type of study.

Engman, E. T.↗

Radiometric Compensation and Calibration for Radarsat ScanSAR

Due to lack of a standard for modeling the radar echo signal in terms of signal unit and coordinates as well as lack of a standard in designing the gain factors in each stage of a processor, absolute radiometric calibration of a SAR system is usually performed by treating the sensor and processor as one inseparable unit. This often makes the calibration procedure complicated and requiring the involvement of both radar system engineers and processor engineers in the whole process. This paper introduces a standard for modeling the radar echo signal and a standard in designing the gain factor of a ScanSAR processor. In this paper, the radar equation is derived based on the amount of energy instead of the power received from a backscatterer. These efforts lead to simple and easy-to-understand equations for radiometric compensation and calibration.

Jin, Michael Y.↗

Cleavage at the nsp5–nsp6 site of SARS-CoV-2 main protease intermediate precursor is faster from a monomer than a dimer form

Our previous studies of severe acute respiratory syndrome coronavirus 2 main protease (MPro) precursor monomer indicate that the initial N-terminal nonstructural protein (nsp)4/nsp5 cleavage occurs intramolecularly, with a small fraction of the active site loop equilibrium being in the active state. To understand the influence of dimer formation of MPro upon N-terminal cleavage on the subsequent C-terminal nsp5/nsp6 intermolecular cleavage kinetics, the stepwise processing of a monomeric, inactive precursor containing the native terminal cleavage sites of MPro (MBP- (−6) MPro C145A(+3) -GB1-6H, 86.2 kDa) by mature WT MPro (MPro WT ) was investigated. Differential scanning fluorimetry and analytical ultracentrifugation measurements of various MPro constructs suggest that the C145A mutation decreases the dimer dissociation constant (K dimer ) by ∼26-fold, relative to WT C145 and H41A. The monomeric precursor’s nsp4–nsp5 site appears to saturate MProWT’s active sites and cleave faster, followed by a slower first-order cleavage at the C-terminal site. No detectable product resulting from the C-terminal cleavage is observed until most of the N-terminal cleavage is complete. The initial intermediate product (termed MPro C145A-IP ) is a homodimer with an estimated K dimer of <0.05 μM. In contrast, the first-order kinetics observed for the cleavage of the monomeric form of the intermediate product is at least 300 times faster than that of the dimer form. Room-temperature X-ray structure of the MPro C145A-IP –ensitrelvir complex is like that of the MPro WT –ensitrelvir complex and reveals a dynamic C-terminal region including MPro residues 302 to 306. These results are interpreted from the point of view of a mechanism in which nsp5–nsp6 cleavage may occur from a monomeric intermediate, and dimer formation restricts this cleavage.

60 APPLIED LIFE SCIENCES↗

2018 NISAR Applications Workshop: Wetlands; Workshop Report

Wetland ecosystems are a critical part of our natural environment, providing socioeconomic benefits to human communities and habitats to a rich diversity of plant and animal life. Socioeconomic benefits include improved water quality, flood control, foods, shoreline stabilization, groundwater recharge, and recreational opportunities. Wetlands also have a major role as carbon sinks and sources through processes that are influenced by the duration and timing of soil saturation and inundation. Thus, carbon and water cycle models must take into account wetland extent and seasonal patterns of wetland inundation. The joint NASA, US Geological Survey (USGS) and Fish and Wildlife Service (FWS) workshop focused on advancing wetland applications of the spaceborne NASA-ISRO Synthetic Aperture Radar (SAR) mission (NISAR), a jointly developed satellite between NASA and the Indian Space Research Organisation (ISRO) expected for launch early 2022. Participants from 15 national and international organizations --including US Federal Agencies, nonprofits, academics, and the private sector-- had been identified as key-players in facilitating integration of Earth Observations into decision support workflows. Discussions were held over two and a half days to convey the knowledge and measurement needs of the wetlands community and discuss the delivery of relevant geospatial products that could be derived from NISAR data. While the community typically characterizes wetlands by their hydrological process, vegetation and soil types, a central defining characteristic is that a wetland is a land area inundated or saturated in the rootzone for at least 2 weeks of the average vegetation growing season.

FWS↗

The NASA/JPL Airborne Synthetic Aperture Radar System

In this paper we will briefly describe the instrument characteristics, the evolution of various radar modes, the instrument performance and improvement in the knowledge of the positioning and attitude information of the NASA/JPL airborne synthetic aperture radar (SAR). This system operates in the fully polarimetric mode in the P, L, and C band simultaneously or in the interferometric mode in both the L and C band simultaneously. We also summarize the progress of the data processing effort, especially in the interferometry processing and we address the issue of processing and calibrating the cross-track interferometry data.

Lou, Yunling↗

Preliminary results of polarization signatures for glacial moraines in the Mono Basin, Eastern Sierra Nevada

The valleys of the Mono Basin contain several sets of lateral and terminal moraines representing multiple stages of glaciation. The semi-arid climate with slow weathering rates preserved sequences of nested younger moraines within older ones. There is a well established relative chronology and recently exposure dating provided a new set of numerical dates. The moraines span the late Wisconsin (11-25 ka) to the Illinoian (130-190 ka) glaciations. The Mono Basin area was used as a 'calibration site' to establish remote dating techniques for eventual transfer to the more inaccessible but geomorphically and climatically similar moraines of the South American Andes Mountains. Planned polarimetric synthetic aperture radar (SAR) imagery acquired by JPL AIRSAR (South American Campaign) and SIR-C (Andes super-site) are analyzed to establish chronologies of previously undated moraine sequences in a study of Pleistocene climatic change in the Southern Hemisphere. The dry climate and sparse vegetation is also favorable for correlation of ground surface roughness with radar polarization signature. The slow weathering processes acting over thousands of years reduce the size, frequency, and angularity of surface boulders while increasing soil development on the moraines. Field observations based on this hypothesis result in relative ages consistent with those inferred from nested position within the valley. Younger moraines, therefore, will appear rougher than the older smoother moraines at scales measurable at AIRSAR wavelengths. Previously documented effects of ground surface roughness on polarization signatures suggest that analysis of moraine polarization signatures can be useful for relative dating. The technique may be extended to predict numerical ages. The data set reported were acquired on 8 Sep. 1989 with the JPL Airborne SAR (AIRSAR) collecting polarimetric imagery at C- (5.6 cm), L- (24 cm), and P-band (68 cm) with a flight-line parallel to the strike of the mountains. Phase calibration was performed on the analyzed scene by setting the co-phase of a smooth lake to zero as described. Absolute amplitude calibration was not possible because corner reflectors were not deployed.

Forster, Richard R.↗

The interpretation of digital recordings of SIR-A, Seasat, and Landsat data of the Algerian salt deposits

Seasat and SIR-A SAR and Landsat MSS imagery of the salt beds of western Algeria are compared. The Landsat image was made 5 yr before the Seasat image, which was taken nearly 9 yr before the Shuttle radar image. The latter was processed in the visible channel. Differences in the backscatter in the radar imagery are attributed to the viewing angle and the characteristics of each salt deposit. The imagery allowed a determination of the changes in the shapes and areal extent of the salt pools over time, as well as alterations in nearby vegetation cover and the evolution of aeolian formations.

Rebillard, P.↗

The NASA Airborne Synthetic Aperture Radar System

None given. (From introduction): ...we will briefly describe the instrument characteristics, the evolution of the various radar modes, the instrument performance and improvement in the knowledge of the positioning and attitude information of the radar. In addition, we will summarize the [rogress of the data processing effort, especially in the interferometry processing. Finally, we will address the issue of processing and calibrating the cross-track interferometry (XTI) data.

radar radar↗

Characterization of alternate encounter assemblies of SARS-CoV-2 main protease

The assembly of two monomeric constructs spanning segments 1-199 (MPro 1-199 ) and 10-306 (MPro 10-306 ) of SARS-CoV-2 main protease (MPro) was examined to assess the existence of a transient heterodimer intermediate in the N-terminal autoprocessing pathway of MPro model precursor. Together, they form a heterodimer population accompanied by a 13-fold increase in catalytic activity. Addition of inhibitor GC373 to the proteins increases the activity further by ~7-fold with a 1:1 complex and higher order assemblies approaching 1:2 and 2:2 molecules of MPro 1-199 and MPro 10-306 detectable by analytical ultracentrifugation and native mass estimation by light scattering. Assemblies larger than a heterodimer (1:1) are discussed in terms of alternate pathways of domain III association, either through switching the location of helix 201 to 214 onto a second helical domain of MPro 10-306 and vice versa or direct interdomain III contacts like that of the native dimer, based on known structures and AlphaFold 3 prediction, respectively. At a constant concentration of MPro 1-199 with molar excess of GC373, the rate of substrate hydrolysis displays first order dependency on the MPro 10-306 concentration and vice versa. An equimolar composition of the two proteins with excess GC373 exhibits half-maximal activity at ~6 μM MPro 1-199 . Catalytic activity arises primarily from MPro 1-199 and is dependent on the interface interactions involving the N-finger residues 1 to 9 of MPro 1-199 and E290 of MPro 10-306 . Importantly, our results confirm that a single N-finger region with its associated intersubunit contacts is sufficient to form a heterodimeric MPro intermediate with enhanced catalytic activity.

60 APPLIED LIFE SCIENCES↗

Unsupervised Segmentation Of Polarimetric SAR Data

Method of unsupervised segmentation of polarimetric synthetic-aperture-radar (SAR) image data into classes involves selection of classes on basis of multidimensional fuzzy clustering of logarithms of parameters of polarimetric covariance matrix. Data in each class represent parts of image wherein polarimetric SAR backscattering characteristics of terrain regarded as homogeneous. Desirable to have each class represent type of terrain, sea ice, or ocean surface distinguishable from other types via backscattering characteristics. Unsupervised classification does not require training areas, is nearly automated computerized process, and provides nonsubjective selection of image classes naturally well separated by radar.

Rignot, Eric J.↗

SMAP Radar Processing and Calibration

The Soil Moisture Active Passive (SMAP) mission is part of the NASA space-based Earth observation program, and consists of an L-band radar and radiometer scheduled for launch into sun synchronous orbit in late 2014. A joint effort of the Jet Propulsion Laboratory (JPL) and the Goddard Space Flight Center (GSFC), the SMAP mission draws heavily on the design and risk reduction heritage of the Hydrosphere State (Hydros) mission [1], [2]. The SMAP science and applications objectives are to: 1) understand processes that link the terrestrial water, energy and carbon cycles, 2) estimate global water and energy fluxes at the land surface, 3) quantify net carbon flux in boreal landscapes, 4) enhance weather and climate forecast skill, and 5) develop improved flood prediction and drought monitoring capability. To meet these science objectives, SMAP ground processing will combine the attributes of the radar and radiometer observations (in terms of their spatial resolution and sensitivity to soil moisture, surface roughness, and vegetation) to estimate soil moisture with 4% volumetric accuracy at a resolution of 10 km, and freeze-thaw state at a resolution of 1-3 km. Model sensitivities translate the soil moisture accuracy to a radar backscatter accuracy of 1 dB (1 sigma) at 3 km resolution and a brightness temperature accuracy of 1.3 K at 40 km resolution. This paper will describe the level 1 radar processing and calibration challenges and the choices made so far for the algorithms and software implementation.

Synthetic Aperture Radar (SAR),↗

Analysis and an image recovery algorithm for ultrasonic tomography system

The problem of an ultrasonic reflectivity tomography is similar to that of a spotlight-mode aircraft Synthetic Aperture Radar (SAR) system. The analysis for a circular path spotlight mode SAR in this paper leads to the insight of the system characteristics. It indicates that such a system when operated in a wide bandwidth is capable of achieving the ultimate resolution; one quarter of the wavelength of the carrier frequency. An efficient processing algorithm based on the exact two dimensional spectrum is presented. The results of simulation indicate that the impulse responses meet the predicted resolution performance. Compared to an algorithm previously developed for the ultrasonic reflectivity tomography, the throughput rate of this algorithm is about ten times higher.

Jin, Michael Y.↗