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At least 523 records · Page 29

Understanding the Impact of Data Staging for Coupled Scientific Workflows

We report the rate of data generated by cutting-edge experimental science facilities and large-scale simulations enabled by current high-performance computing (HPC) systems has continued to grow at a far greater pace than the development of the network and storage capabilities on which these systems rely. To cope with this challenge, scientist are moving toward the creation of autonomous experiments and HPC simulations using machine learning. However, efficiently moving, storing, and processing large amounts of data away from the point of origin presents an incredible challenge. In-memory computing, in situ analysis, data staging, and data streaming are recognized viable alternatives to traditional file-based methods for transferring data between coupled workflows. However, the performance trade-offs and limitations for these methods are not fully understood when used in HPC applications. This article presents a comprehensive performance assessment of the current solutions for data staging when applied to applications that are not necessary I/O intensive which makes them not ideal candidates for these methods. Our study is based on experiments running at scale on Oak Ridge National Laboratory's Summit supercomputer using applications and simulations that cover typical computational motifs and patterns. We investigated the usability and cost/benefit trade-offs of staging algorithms for HPC applications under different scenarios and highlight opportunities for optimizing the dataflow between coupled simulation workflows.

97 MATHEMATICS AND COMPUTING↗

Spacecraft thermal balance testing using infrared sources

A thermal balance test (controlled flux intensity) on a simple black dummy spacecraft using IR lamps was performed and evaluated, the latter being aimed specifically at thermal mathematical model (TMM) verification. For reference purposes the model was also subjected to a solar simulation test (SST). The results show that the temperature distributions measured during IR testing for two different model attitudes under steady state conditions are reproducible with a TMM. The TMM test data correlation is not as accurate for IRT as for SST. Using the standard deviation of the temperature difference distribution (analysis minus test) the SST data correlation is better by a factor of 1.8 to 2.5. The lower figure applies to the measured and the higher to the computer-generated IR flux intensity distribution. Techniques of lamp power control are presented. A continuing work program is described which is aimed at quantifying the differences between solar simulation and infrared techniques for a model representing the thermal radiating surfaces of a large communications spacecraft.

Tan, G. B. T.↗

Data processing techniques used with MST radars: A review

The data processing methods used in high power radar probing of the middle atmosphere are examined. The radar acts as a spatial filter on the small scale refractivity fluctuations in the medium. The characteristics of the received signals are related to the statistical properties of these fluctuations. A functional outline of the components of a radar system is given. Most computation intensive tasks are carried out by the processor. The processor computes a statistical function of the received signals, simultaneously for a large number of ranges. The slow fading of atmospheric signals is used to reduce the data input rate to the processor by coherent integration. The inherent range resolution of the radar experiments can be improved significant with the use of pseudonoise phase codes to modulate the transmitted pulses and a corresponding decoding operation on the received signals. Commutability of the decoding and coherent integration operations is used to obtain a significant reduction in computations. The limitations of the processors are outlined. At the next level of data reduction, the measured function is parameterized by a few spectral moments that can be related to physical processes in the medium. The problems encountered in estimating the spectral moments in the presence of strong ground clutter, external interference, and noise are discussed. The graphical and statistical analysis of the inferred parameters are outlined. The requirements for special purpose processors for MST radars are discussed.

Rastogi, P. K.↗

Segmentation of tomography datasets using 3D convolutional neural networks

Dendritic microstructures are ubiquitous in nature and are the primary solidification morphologies in metallic materials. Techniques such as X-ray computed tomography (XCT) have provided new insights into dendritic phase transformation phenomena. However, manual identification of dendritic morphologies in microscopy data can be both labor intensive and potentially ambiguous. The analysis of 3D datasets is particularly challenging due to their large sizes (terabytes) and the presence of artifacts scattered within the imaged volumes. Here, in this study, we trained 3D convolutional neural networks (CNNs) to segment 3D datasets. Three CNN architectures were investigated, including a new version of FCDenseNet which we extended to 3D. We show that using hyperparameter optimization (HPO) and fine-tuning techniques, both 2D and 3D CNN architectures outperform the previous state of the art. The 3D U-Net architecture trained in this study produced the best segmentations according to quantitative metrics (intersection-over-union of 95.56% and a boundary displacement error of 0.58 pixels), while 3D FCDense produced the smoothest boundaries and best segmentations according to visual inspection. The trained 3D CNNs are able to segment entire 852 × 852 × 250 voxel 3D volumes in only ~60 s, thus hastening the progress towards a deeper understanding of phase transformation phenomena such as dendritic solidification.

36 MATERIALS SCIENCE↗

Collisional excitation of C2H− by H2: New interaction potential and scattering calculations

Interstellar anions play an important role in astrochemistry as being tracers of the physical and chemical conditions in cold molecular clouds and circumstellar gas. The local thermodynamic equilibrium is generally not fulfilled in media where anions are detected and radiative and collisional data are required to model the observed lines. The C2H− anion has not yet been detected in the interstellar medium; however, collisional data could be used for non-LTE models that would help in identifying the most intense lines. For this purpose, we have computed the first 4D potential energy surface (PES) of the C2H−–H2 complex using an explicitly correlated coupled-cluster approach. The PES is characterized by a single deep minimum with a well-depth of 924.96 cm−1. From this interaction potential, we derived excitation cross sections and rate coefficients of C2H− induced by collisions with para- and ortho-H2. The results obtained for collisions with para-H2 are compared to previous calculations performed using a 2D-PES obtained from an average over H2 rotations.

Chemistry↗

Ethane and acetylene abundances in the Jovian atmosphere

The paper reports spectra of Jupiter in the spectral region from 755 to 850 kaysers, which covers the nu-9 fundamental of ethane and contains lines from the R branch of the nu-5 fundamental of acetylene. The monochromatic absorption coefficient of the central Q branch of the nu-9 fundamental of ethane, which was determined in the laboratory, is applied in a radiative-transfer calculation to evaluate the ethane mixing ratio in the Jovian atmosphere; the present data are also used to place an upper limit on the acetylene mixing ratio. For the radiative-transfer calculation, emission intensity is computed for the region above the 0.02-atm level assuming both an isothermal inversion layer and a previously reported temperature profile. The resulting maximum mixing ratios consistent with the observations are 0.00003 for ethane and 7.5 by 10 to the -8th power for acetylene.

Tokunaga, A.↗

Digital Signal Conditioning for Flight Test, Volume 19 [Le Traitement du Signal Numérique pour les Essais en Vol]

This volume in the AGARD Flight Instrumentation Series provides flight test instrumentation engineers with an introduction to digital processes on aircraft. Flight test instrumentation systems are rapidly evolving from analog intensive to digital intensive systems, including the use of onboard digital computers. Topics include: measurements that are digital in origin, sampling, encoding, transmitting, and storing of data. Particular emphasis is placed on modem avionic data bus architectures and what to be aware of when extracting data from them. Some example data extraction techniques are given. Tradeoffs between digital logic families, trends in digital development, and design testing techniques are discussed. An introduction to digital filtering is also covered.

Flight instruments↗

Analysis of Physical Properties of Dust Suspended in the Mars Atmosphere

Methods for iteratively determining the infrared optical constants for dust suspended in the Mars atmosphere are described. High quality spectra for wavenumbers from 200 to 2000 1/cm were obtained over a wide range of view angles by the Mariner 9 spacecraft, when it observed a global Martian dust storm in 1971-2. In this research, theoretical spectra of the emergent intensity from Martian dust clouds are generated using a 2-stream source-function radiative transfer code. The code computes the radiation field in a plane-parallel, vertically homogeneous, multiply scattering atmosphere. Calculated intensity spectra are compared with the actual spacecraft data to iteratively retrieve the optical properties and opacity of the dust, as well as the surface temperature of Mars at the time and location of each measurement. Many different particle size distributions a-re investigated to determine the best fit to the data. The particles are assumed spherical and the temperature profile was obtained from the CO2 band shape. Given a reasonable initial guess for the indices of refraction, the searches converge in a well-behaved fashion, producing a fit with error of less than 1.2 K (rms) to the observed brightness spectra. The particle size distribution corresponding to the best fit was a lognormal distribution with a mean particle radius, r(sub m) 0.66 pm, and variance, omega(sup 2) = 0.412 (r(sub eff) = 1.85 microns, v(sub eff) =.51), in close agreement with the size distribution found to be the best fit in the visible wavelengths in recent studies. The optical properties and the associated single scattering properties are shown to be a significant improvement over those used in existing models by demonstrating the effects of the new properties both on heating rates of the Mars atmosphere and in example spectral retrieval of surface characteristics from emission spectra.

Snook, Kelly↗

EqualChance: Addressing Intra-set Write Variation to Increase Lifetime of Non-volatile Caches

To address the limitations of SRAM such as high-leakage and low-density, researchers have explored use of non-volatile memory (NVM) devices, such as ReRAM (resistive RAM) and STT-RAM (spin transfer torque RAM) for designing on-chip caches. A crucial limitation of NVMs, however, is that their write endurance is low and the large intra-set write variation introduced by existing cache management policies may further exacerbate this problem, thereby reducing the cache lifetime significantly. We present EqualChance, a technique to increase cache lifetime by reducing intra-set write variation. EqualChance works by periodically changing the physical cache-block location of a write-intensive data item within a set to achieve wear-leveling. Simulations using workloads from SPEC CPU2006 suite and HPC (high-performance computing) field show that EqualChance improves the cache lifetime by 4.29X. Also, its implementation overhead is small, and it incurs very small performance and energy loss.

cache lifetime↗

High-Intensity Radiated Field Fault-Injection Experiment for a Fault-Tolerant Distributed Communication System

Safety-critical distributed flight control systems require robustness in the presence of faults. In general, these systems consist of a number of input/output (I/O) and computation nodes interacting through a fault-tolerant data communication system. The communication system transfers sensor data and control commands and can handle most faults under typical operating conditions. However, the performance of the closed-loop system can be adversely affected as a result of operating in harsh environments. In particular, High-Intensity Radiated Field (HIRF) environments have the potential to cause random fault manifestations in individual avionic components and to generate simultaneous system-wide communication faults that overwhelm existing fault management mechanisms. This paper presents the design of an experiment conducted at the NASA Langley Research Center's HIRF Laboratory to statistically characterize the faults that a HIRF environment can trigger on a single node of a distributed flight control system.

Yates, Amy M.↗

Computer based imaging and analysis of root gravitropism

Two key issues in studies of the nature of the gravitropic response in roots have been the determination of the precise pattern of differential elongation responsible for downward bending and the identification of the cells that show the initial motor response. The main approach for examining patterns of differential growth during root gravitropic curvature has been to apply markers to the root surface and photograph the root at regular intervals during gravitropic curvature. Although these studies have provided valuable information on the characteristics of the gravitropic motor response in roots, their labor intensive nature limits sample size and discourages both high frequency of sampling and depth of analysis of surface expansion data. In this brief review we describe the development of computer-based video analysis systems for automated measurement of root growth and shape change and discuss some key features of the root gravitropic response that have been revealed using this methodology. We summarize the capabilities of several new pieces of software designed to measure growth and shape changes in graviresponding roots and describe recent progress in developing analysis systems for studying the small, but experimentally popular, primary roots of Arabidopsis. A key finding revealed by such studies is that the initial gravitropic response of roots of maize and Arabidopsis occurs in the distal elongation zone (DEZ) near the root apical meristem, not in the main elongation zone. Another finding is that the initiation of rapid elongation in the DEZ following gravistimulation appears to be related to rapid membrane potential changes in this region of the root. These observations have provided the incentive for ongoing studies examining possible links between potential growth modifying factors (auxin, calcium, protons) and gravistimulated changes in membrane potential and growth patterns in the DEZ.

NASA Discipline Plant Biology↗

Designing Algorithms for the EMU Migrating-threads-based Architecture

The decades-old memory bottleneck problem for data-intensive applications is getting worse as the processor core counts continue to increase. Workloads with sparse memory access characteristics only achieve a fraction of a system’s total memory bandwidth. EMU architecture provides a radical approach to the issue by migrating the computational threads to the location where the data resides. The system enables access to a large PGAS-type memory for hundreds of nodes via a Cilk- based multi-threaded execution scheme.EMU architecture brings brand new challenges in application design and development. Data distribution and thread creation strategies play a crucial role in achieving optimal performance in the EMU platform. In this work, we identify several design considerations that need to be taken care of while developing applications for the new architecture and we evaluate their performance effects on the EMU-chick hardware. We also present a modified BFS algorithm for the EMU system and give experi- mental results for its execution on the platform.

Belviranli, Mehmet E.↗

Beam dynamics in an ultra-low energy storage rings (review of existing facilities and feasibility studies for future experiments)

Storage rings operating at ultra-low energies and in particular electrostatic storage rings have proven to be invaluable tools for atomic and molecular physics. Due to the mass independence of the electrostatic rigidity, these machines are able to store a wide range of different particles, from light ions to heavy singly charged bio-molecules. However, earlier measurements showed strong limitations on beam intensity, fast decay of ion current, reduced life time etc. The nature of these effects was not fully understood. Also a large variety of experiments in future generation ultra-low energy storage and decelerator facilities including in-ring collision studies with a reaction microscope require a comprehensive investigation of the physical processes involved into the operation of such rings. In this paper, we present review of non-linear and long term beam dynamics studies on example of the ELISA, AD Recycler, TSR and USR rings using the computer codes BETACOOL, OPERA-3D and MAD-X. The results from simulations were benchmarked against experimental data of beam losses in the ELISA storage ring. We showed that decay of beam intensity in ultra-low energy rings is mainly caused by ion losses on ring aperture due to multiple scattering on residual gas. Beam is lost on ring aperture due to small ring acceptance. Rate of beam losses increases at high intensities because of the intra-beam scattering effect adds to vacuum losses. Detailed investigations into the ion kinetics under consideration of the effects from electron cooling and multiple scattering of the beam on a supersonic gas jet target have been carried out as well. The life time, equilibrium momentum spread and equilibrium lateral spread during collisions with this internal gas jet target were estimated. In addition, the results from experiments at the TSR ring, where low intensity beam of CF{sup +} ions at 93 keV/u has been shrunk to extremely small dimensions have been reproduced. Based on these simulations, conditions for stable ring operation with extremely low emittance beam are presented. Finally, results from studies into the interaction of ions with a gas jet target at 3–30 keV energy range are summarized.

43 PARTICLE ACCELERATORS↗

Modification of Mach 6 Freestream Flow by Pitot Probe Bow Shock as Measured by Line FLDI and SAFS

Measurements of the flow in front of flat-face Pitot probes in NASA Langley ResearchCenter’s 20-Inch Mach 6 Air Tunnel were made using a 35-point line focused laser differentialinterferometer (FLDI), a two-point FLDI, and a self-aligned focusing schlieren system. Thesesystems were used to make measurements of flow unsteadiness between the bow shock andPitot probe face, while also probing the freestream region just upstream of the bow shock.Shock standoff distances from the non-intrusive measurements match closely with analyticalsolutions using the probe face diameter. Acoustic wave angles and velocities in the freestreamcompare favorably with DNS simulations of a Mach 6 freestream flow, and wave velocities in thepost-shock region slow as they approach the probe face. Peak frequencies in the post-shockregion as measured by FLDI compare favorably to the estimates computed from the shockstandoff distance for most probe diameters. With increasing unit Reynolds number, fluctuationintensities in the post-shock region were attenuated below the intensities of the freestream, witha spectral, spatial, and probe size dependence. Pitot probe power spectral density estimatesare presented from the test campaign, which can be compared with FLDI and SAFS data toevaluate the applicability of the transfer functions derived from computational simulations.

Joshua M Weisberger↗

Development of Jet Noise Power Spectral Laws

High-quality jet noise spectral data measured at the Aero-Acoustic Propulsion Laboratory (AAPL) at NASA Glenn is used to develop jet noise scaling laws. A FORTRAN algorithm was written that provides detailed spectral prediction of component jet noise at user-specified conditions. The model generates quick estimates of the jet mixing noise and the broadband shock-associated noise (BBSN) in single-stream, axis-symmetric jets within a wide range of nozzle operating conditions. Shock noise is emitted when supersonic jets exit a nozzle at imperfectly expanded conditions. A successful scaling of the BBSN allows for this noise component to be predicted in both convergent and convergent-divergent nozzles. Configurations considered in this study consisted of convergent and convergent- divergent nozzles. Velocity exponents for the jet mixing noise were evaluated as a function of observer angle and jet temperature. Similar intensity laws were developed for the broadband shock-associated noise in supersonic jets. A computer program called sJet was developed that provides a quick estimate of component noise in single-stream jets at a wide range of operating conditions. A number of features have been incorporated into the data bank and subsequent scaling in order to improve jet noise predictions. Measurements have been converted to a lossless format. Set points have been carefully selected to minimize the instability-related noise at small aft angles. Regression parameters have been scrutinized for error bounds at each angle. Screech-related amplification noise has been kept to a minimum to ensure that the velocity exponents for the jet mixing noise remain free of amplifications. A shock-noise-intensity scaling has been developed independent of the nozzle design point. The computer program provides detailed narrow-band spectral predictions for component noise (mixing noise and shock associated noise), as well as the total noise. Although the methodology is confined to single streams, efforts are underway to generate a data bank and algorithm applicable to dual-stream jets. Shock-associated noise in high-powered jets such as military aircraft can benefit from these predictions.

Khavaran, Abbas↗

A fast band–Krylov eigensolver for macromolecular functional motion simulation on multicore architectures and graphics processors

We introduce a new iterative Krylov subspace-based eigensolver for the simulation of macromolecular motions on desktop multithreaded platforms equipped with multicore processors and, possibly, a graphics accelerator (GPU). The method consists of two stages, with the original problem first reduced into a simpler band-structured form by means of a high-performance compute-intensive procedure. This is followed by a memory-intensive but low-cost Krylov iteration, which is off-loaded to be computed on the GPU by means of an efficient data-parallel kernel. The experimental results reveal the performance of the new eigensolver. Concretely, when applied to the simulation of macromolecules with a few thousands degrees of freedom and the number of eigenpairs to be computed is small to moderate, the new solver outperforms other methods implemented as part of high-performance numerical linear algebra packages for multithreaded architectures.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Power and Performance Trade-offs for Space Time Adaptive Processing

Computational efficiency – performance relative to power or energy – is one of the most important concerns when designing RADAR processing systems. This paper analyzes power and performance trade-offs for a typical Space Time Adaptive Processing (STAP) application. We study STAP implementations for CUDA and OpenMP on two computationally efficient architectures, Intel Haswell Core I7-4770TE and NVIDIA Kayla with a GK208 GPU. We analyze the power and performance of STAP’s computationally intensive kernels across the two hardware testbeds. We also show the impact and trade-offs of GPU optimization techniques. We show that data parallelism can be exploited for efficient implementation on the Haswell CPU architecture. The GPU architecture is able to process large size data sets without increase in power requirement. The use of shared memory has a significant impact on the power requirement for the GPU. A balance between the use of shared memory and main memory access leads to an improved performance in a typical STAP application.

Gawande, Nitin A.↗