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At least 523 records · Page 29

Hybrid Simulation of Solar-Wind-Like Turbulence

We present 2.5D hybrid simulations of the spectral and thermodynamic evolution of an initial state of magnetic field and plasma variables that in many ways represents solar wind fluctuations. In accordance with Helios near-Sun high-speed stream observations, we start with Alfvénic fluctuations along a mean magnetic field in which the fluctuations in the magnitude of the magnetic field are minimized. Since fluctuations in the radial flow speed are the dominant free energy in the observed fluctuations, we include a field-aligned v∥(k⊥) with an k(exp −1) spectrum of velocity fluctuations to drive the turbulent evolution. The flow rapidly distorts the Alfvénic fluctuations, yielding spectra (determined by spacecraft-like cuts) transverse to the field that become comparable to the k∥ fluctuations, as in spacecraft observations. The initial near constancy of the magnetic field is lost during the evolution; we show this also takes place observationally. We find some evolution in the anisotropy of the thermal fluctuations, consistent with expectations based on Helios data. We present 2D spectra of the fluctuations, showing the evolution of the power spectrum and cross-helicity. Despite simplifying assumptions, many aspects of simulations and observations agree. The greatly faster evolution in the simulations is at least in part due to the small scales being simulated, but also to the non-equilibrium initial conditions and the relatively low overall Alfvénicity of the initial fluctuations.

Roberts, D. Aaron↗

Deconvoluting thermomechanical effects in X-ray diffraction data using machine learning

X-ray diffraction is ideal for probing the sub-surface state during complex or rapid thermomechanical loading of crystalline materials. However, challenges arise as the size of diffraction volumes increases due to spatial broadening and because of the inability to deconvolute the effects of different lattice deformation mechanisms. Here, we present a novel approach that uses combinations of physics-based modeling and machine learning to deconvolve thermal and mechanical elastic strains for diffraction data analysis. The method builds on a previous effort to extract thermal strain distribution information from diffraction data. The new approach is applied to extract the evolution of the thermomechanical state during laser melting of an Inconel 625 wall specimen which produces significant residual stress upon cooling. A combination of heat transfer and fluid flow, elasto-plasticity and X-ray diffraction simulations is used to generate training data for machine-learning (Gaussian process regression, GPR) models that map diffracted intensity distributions to underlying thermomechanical strain fields. First-principles density functional theory is used to determine accurate temperature-dependent thermal expansion and elastic stiffness used for elasto-plasticity modeling. The trained GPR models are found to be capable of deconvoluting the effects of thermal and mechanical strains, in addition to providing information about underlying strain distributions, even from complex diffraction patterns with irregularly shaped peaks.

36 MATERIALS SCIENCE↗

Simulating cosmological evolution by quantum quench of an atomic Bose-Einstein condensate

In cosmological evolution, it is the homogeneous scalar field (inflaton) that drives the universe to expand isotropically and to generate standard model particles. However, to simulate cosmology, atomic gas research has focused on the dynamics of Bose-Einstein condensates (BEC) with continuously applied forces. In this paper we argue that a complementary approach needs also to be pursued; we thus consider the analog BEC experiments in a nondriven and naturally closed atomic system. We implement this using a BEC in an optical lattice which, after a quench, freely transitions from an unstable to a stable state. Furthermore, this dynamical evolution displays the counterpart “preheating,” “reheating,” and “thermalization” phases of cosmology. Importantly, our studies of these analog processes yield tractable analytic models. Additionally, of great utility to the cold atom community, such understanding elucidates the dynamics of nonadiabatic condensate preparation. Indeed, the dynamical processes discussed here are generic and in future cold atom reequilibration experiments it will be important to observe both the preheating stage, corresponding to a fragmented condensate, and the reheating stage, corresponding to a particle cloud.

74 ATOMIC AND MOLECULAR PHYSICS↗

Diabatic quantum annealing for the frustrated ring model

Abstract Quantum annealing (QA) is a continuous-time heuristic quantum algorithm for solving or approximately solving classical optimization problems. The algorithm uses a schedule to interpolate between a driver Hamiltonian with an easy-to-prepare ground state and a problem Hamiltonian whose ground state encodes solutions to an optimization problem. The standard implementation relies on the evolution being adiabatic: keeping the system in the instantaneous ground state with high probability and requiring a time scale inversely related to the minimum energy gap between the instantaneous ground and excited states. However, adiabatic evolution can lead to evolution times that scale exponentially with the system size, even for computationally simple problems. Here, we study whether non-adiabatic evolutions with optimized annealing schedules can bypass this exponential slowdown for one such class of problems called the frustrated ring model. For sufficiently optimized annealing schedules and system sizes of up to 39 qubits, we provide numerical evidence that we can avoid the exponential slowdown. Our work highlights the potential of highly-controllable QA to circumvent bottlenecks associated with the standard implementation of QA.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

The Evolution and Mass Dependence of Galaxy Cluster Pressure Profiles at 0.05 ≤ z ≤ 0.60 and 4 × 10 14 M ⊙ ≤ M 500 ≤ 30 × 10 14 M ⊙

Abstract We have combined X-ray observations from Chandra with Sunyaev–Zel’dovich effect data from Planck and Bolocam to measure intracluster medium pressure profiles from 0.03 R 500 ≤ R ≤ 5 R 500 for a sample of 21 low- z galaxy clusters with a median redshift of 〈 z 〉 = 0.08 and a median mass of 〈 M 500 〉 = 6.1 × 10 14 M ⊙ and a sample of 19 mid- z galaxy clusters with 〈 z 〉 = 0.50 and 〈 M 500 〉 = 10.6 × 10 14 M ⊙ . The mean scaled pressure in the low- z sample is lower at small radii and higher at large radii, a trend that is accurately reproduced in similarly selected samples from The Three Hundred simulations. This difference appears to be primarily due to dynamical state at small radii, evolution at intermediate radii, and a combination of evolution and mass dependence at large radii. Furthermore, the overall flattening of the mean scaled pressure profile in the low- z sample compared to the mid- z sample is consistent with expectations due to differences in the mass accretion rate and the fractional impact of feedback mechanisms. In agreement with previous studies, the fractional scatter about the mean scaled pressure profile reaches a minimum of ≃20% near 0.5 R 500 . This scatter is consistent between the low- z and mid- z samples at all radii, suggesting it is not strongly impacted by sample selection, and this general behavior is reproduced in The Three Hundred simulations. Finally, analytic functions that approximately describe the mass and redshift trends in mean pressure profile shape are provided.

79 ASTRONOMY AND ASTROPHYSICS↗

Study of the Al-T-Si (T = Fe, Co, Ni) alloys in the solid, liquid and as-quenched states

Highlights: • Analysis of the formation and evolution of crystalline phases during heat-treatment of as-quenched alloys using in-situ high-temperature XRD. • XRD study and MD simulations of SRO in liquid and amorphous Al-T-Si (T = Fe, Co, Ni) alloys. • Similarity between the CSRO in amorphous Al{sub 65}T{sub 15}Si{sub 20} (T = Fe, Ni) alloys and crystalline Al{sub 9}Fe{sub 2}Si{sub 2} and Al{sub 3}Ni phases. - Abstract: Local atomic structure of liquid and amorphous Al{sub 80 − x}T{sub x}Si{sub 20} (where T = Fe, Co, Ni and x = 10, 15) alloys has been studied by X-ray diffraction (XRD) and molecular dynamics simulations. Chemical short-range order in the liquid and amorphous alloys has been found to be similar to that in the corresponding crystalline counterparts. Formation and evolution of crystalline phases during heat-treatment of the as-quenched ternary alloys up to liquid state were shown using in-situ XRD. Analysis of the morphology of the as-quenched and annealed Al-T-Si ribbons has been performed by transmission electron microscopy.

36 MATERIALS SCIENCE↗

Discovery and Monitoring of a New Black Hole Candidate XTE J1752-223 with RXTE: RMS Spectrum Evolution, BH Mass and the Source Distance

We report on the discovery and monitoring observations of a new galactic black hole candidate XTE J1752-223 by Rossi X-ray Timing Explorer (RXTE). The new source appeared on the X-ray sky on October 21 2009 and was active for almost 8 months. Phenomenologically, the source exhibited the low-hard/highsoft spectral state bi-modality and the variability evolution during the state transition that matches standard behavior expected from a stellar mass black hole binary. We model the energy spectrum throughout the outburst using a generic Comptonization model assuming that part of the input soft radiation in the form of a black body spectrum gets reprocessed in the Comptonizing medium. We follow the evolution of fractional root-mean-square (RMS) variability in the RXTE/PCA energy band with the source spectral state and conclude that broad band variability is strongly correlated with the source hardness (or Comptonized fraction). We follow changes in the energy distribution of rms variability during the low-hard state and the state transition and find further evidence that variable emission is strongly concentrated in the power-law spectral component. We discuss the implication of our results to the Comptonization regimes during different spectral states. Correlations of spectral and variability properties provide measurements of the BH mass and distance to the source. The spectral-timing correlation scaling technique applied to the RXTE observations during the hardto- soft state transition indicates a mass of the BH in XTE J1752-223 between 8 and 11 solar masses and a distance to the source about 3.5 kiloparsec.

Shaposhinikov, Nikolai↗

Reconstructing parent microstructures in martensitic and pearlitic Ti-Cu

Evaluating the microstructural evolution of parent phases has long been a challenge in metals with a partial or complete solid state transformation. Most parent microstructure evolution has to be inferred from the product microstructure, with some information permanently lost. Parent microstructure reconstructions relying on orientation relationships and EBSD data are a useful tool to overcome this challenge, though much background knowledge is required to do so. Here, this work introduces a reconstruction process for a eutectoid composition Ti-Cu binary alloy to evaluate the high temperature β-Ti phase from martensitic and pearlitic product microstructures. Martensitic microstructures were accurately reconstructed, enabling elucidation of β-Ti grain size and texture, and the employed script included for scientific reference. Pearlitic microstructures did not reconstruct effectively with the current process. However, new insight into the interfacial crystallographic orientations of pearlitic Ti-Cu microstructures was gleaned via this analysis, and future investigations of interest are discussed accordingly. Ultimately, these findings demonstrate tools widely implemented on conventional titanium and ferrous alloys can also be applied to understand parent microstructures in Ti-Cu and other alloys of emerging interest. This is especially of use as new manufacturing processes for such materials require understanding how parent phase microstructures respond to new, novel material processing such as AM.

36 MATERIALS SCIENCE↗

Structures of the intermediates of Kok’s photosynthetic water oxidation clock

Inspired by the period-four oscillation in flash-induced oxygen evolution of photosystem II discovered by Joliot in 1969, Kok performed additional experiments and proposed a five-state kinetic model for photosynthetic oxygen evolution, known as Kok’s S-state clock or cycle. The model comprises four (meta)stable intermediates (S 0 , S 1 , S 2 and S 3 ) and one transient S 4 state, which precedes dioxygen formation occurring in a concerted reaction from two water-derived oxygens bound at an oxo-bridged tetra manganese calcium (Mn 4 CaO 5 ) cluster in the oxygen-evolving complex. This reaction is coupled to the two-step reduction and protonation of the mobile plastoquinone QB at the acceptor side of PSII. Here in this paper, using serial femtosecond X-ray crystallography and simultaneous X-ray emission spectroscopy with multi-flash visible laser excitation at room temperature, we visualize all (meta)stable states of Kok’s cycle as high-resolution structures (2.04–2.08 Å). In addition, we report structures of two transient states at 150 and 400 µs, revealing notable structural changes including the binding of one additional ‘water’, Ox, during the S 2 →S 3 state transition. Our results suggest that one water ligand to calcium (W3) is directly involved in substrate delivery. The binding of the additional oxygen Ox in the S 3 state between Ca and Mn1 supports O–O bond formation mechanisms involving O5 as one substrate, where Ox is either the other substrate oxygen or is perfectly positioned to refill the O5 position during O 2 release. Thus, our results exclude peroxo-bond formation in the S 3 state, and the nucleophilic attack of W3 onto W2 is unlikely.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Origins of the Pressure-Induced Phase Transition and Metallization in the Halide Perovskite (CH 3 NH 3 )PbI 3

Hybrid halide perovskites are promising for applications because of their favorable optoelectronic properties and low cost. Here we investigate the effects of hydrostatic pressure on the structural and electronic properties of (MA)PbI 3 (MA = CH 3 NH 3 + ) using first-principles density functional theory calculations. Our calculations predict that at a pressure of 0.23 GPa, the orthorhombic Fmmm phase becomes unstable with respect to a cubic Im$\bar{3}$ phase, in good agreement with room-temperature experiments (~0.3 GPa). At higher pressures, about 6 GPa, we predict the onset of pronounced intra- and interoctahedral distortions. This symmetry lowering leads to the introduction of I 5p–I 5p* antibonding and Pb 6p–Pb 6p bonding character into the valence band maximum (VBM) and the conduction band minimum (CBM) states, respectively. We find this change in bond character explains the evolution of the VBM and CBM states under compression, trends that ultimately lead to metallization at significantly higher pressures.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Adaptation limits ecological diversification and promotes ecological tinkering during the competition for substitutable resources

Microbial communities can evade competitive exclusion by diversifying into distinct ecological niches. This spontaneous diversification often occurs amid a backdrop of directional selection on other microbial traits, where competitive exclusion would normally apply. Yet despite their empirical relevance, little is known about how diversification and directional selection combine to determine the ecological and evolutionary dynamics within a community. To address this gap, we introduce a simple, empirically motivated model of eco-evolutionary feedback based on the competition for substitutable resources. Individuals acquire heritable mutations that alter resource uptake rates, either by shifting metabolic effort between resources or by increasing the overall growth rate. While these constitutively beneficial mutations are trivially favored to invade, we show that the accumulated fitness differences can dramatically influence the ecological structure and evolutionary dynamics that emerge within the community. Competition between ecological diversification and ongoing fitness evolution leads to a state of diversification–selection balance, in which the number of extant ecotypes can be pinned below the maximum capacity of the ecosystem, while the ecotype frequencies and genealogies are constantly in flux. Interestingly, we find that fitness differences generate emergent selection pressures to shift metabolic effort toward resources with lower effective competition, even in saturated ecosystems. Here, we argue that similar dynamical features should emerge in a wide range of models with a mixture of directional and diversifying selection.

59 BASIC BIOLOGICAL SCIENCES↗

Bulk reconstruction and non-isometry in the backwards-forwards holographic black hole map

The backwards-forwards map, introduced as a generalization of the non-isometric holographic maps of the black hole interior of Akers, Engelhardt, Harlow, Penington, and Vardhan to include non-trivial dynamics in the effective description, has two possible formulations differing in when the post-selection is performed. While these two forms are equivalent on the set of dynamically generated states — states formed from unitary time evolution acting on well-defined initial configurations of infalling matter — they differ on the generic set of states necessary to describe the apparent world of the infalling observer. We show that while both versions successfully reproduce the Page curve, the version involving post-selection as the final step, dubbed the backwards-forwards-post-selection (BFP) map, has the desirable properties of being non-isometric but isometric on average and providing state-dependent reconstruction of bulk operators, while the other version does not. Thus the BFP map is a suitable non-isometric code describing the black hole interior including interior interactions.

3-D Image Reconstruction↗

Temporal evolution of the solar wind and the formation of a standing shock

The temporal evolution of the solar wind from one steady state to another is explored when momentum deposition produces multiple critical points in the flow. It is shown that the wind always evolves in time to a new steady state compatible with the solution of the steady state equation of motion. However, for the same initial state and identical asymptotic momentum deposition rate, the temporal evolution pattern of the wind depends on the detailed time history of momentum addition and is therefore not unique. This feature plays an important role in the particular case when multiple (three in this study) steady states exist for identical boundary conditions; each one of these solutions is thus shown to be physically accessible. The details of the temporal evolution pattern of the wind reveal the formation of a shock discontinuity whenever the flow becomes supersonic at a critical point upstream from the initial critical point. If the flow remains supersonic at that inner critical point, the shock can become a standing one, depending on the strength and the temporal history of momentum addition. The results of this study indicate that the time scale required for the solar wind to evolve between steady states is of the order of 30-60 hours. Furthermore, the results also reveal the interesting and novel phenomenon that a standing shock is likely to develop in the inner solar wind flow within this time frame, in particular, in coronal hole regions with rapidly diverging geometries.

Habbal, S. R.↗

ChIMES: A Machine-Learned Interatomic Model Targeting Improved Description of Condensed Phase Chemistry in Energetic Materials

In this report we detail completion of a Physics and Engineering Model Level Two Milestone targeting improved reactive interatomic potentials (IAPs) for energetic materials (EM) through machine learning. The specific goals of this milestone were to develop, validate, and document a new reactive molecular dynamics method for EM, based on machine learning by (1) generating databases of first-principles-derived forces, stresses, and energies for HN3 and 3,4-bis(3-nitrofurazan- 4-yl)furoxan (DNTF) (2) generate atomistic force fields from these databases via ML, and (3) benchmark model performance against first principles calculations. These goals were achieved by (1) further developing a machine learned reactive IAP and generation approach (i.e. the Chebyshev Interaction Model for Efficient Simulation or “ChIMES”), for which resulting IAPs can approach the predictive power of quantum-mechanical approaches at a fraction of the computational expense, and (2) applying the ChIMES framework to develop models for HN3 and DNTF. We find that for simple energetic materials like HN3, high accuracy ChIMES models can be obtained through application of a fitting approach that does not use active machine learning. We demonstrate the suitability of ChIMES models for simulations involving EM by using the HN3 model in multiscale shock technique simulations to predict the HN3 Chapman-Jouguet detonation state and investigate chemical evolution out to 1 ns following shock compression. This model is then used in larger direct shock (DS) simulations for a preliminary investigation of how bubbles (i.e. voids) influence material response under shock compression. We find that more complex EM (i.e. DNTF) necessitate a more sophisticated fitting approach, and develop a new active learning method and python tool to meet this challenge. We demonstrate that this fitting approach yields ChIMES models that out-perform commonly used standard reactive IAPs as well as semi-empirical quantum methods, and discuss the systematic improvability of these actively learned ChIMES models. We also describe challenges related to model development for EM such as DNTF, for which few experimental or previous simulation data are available (e.g. which could otherwise inform generation of training data). To overcome this issue, we establish a semi-empirical quantum ChIMES capability which can be used to efficiently map out relevant thermodynamic and configurational space, and generate ChIMES-IAP training data in a multiscale manner. We also show that these semi-empirical quantum ChIMES models can be used to generate predictions for the shock Hugoniot (the Hugoniot is the locus of thermodynamic states found in a shocked material) equation of state, investigate related thermochemistry, and explore carbon condensation following shock compression. This work represents a substantial advance in our atomistic modeling capability for EM that will provide much needed information on the chemistry of detonation for continued development of continuum models based on the Cheetah thermochemical code.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

PlantCV v4: Image analysis software for high‐throughput plant phenotyping

PlantCV is an open-source Python project aimed at developing tools to address a range of image-based, plant phenotyping questions. PlantCV has been used for more than 10 years to automate trait collection from image data, and the newest release, PlantCV version 4, continues to lower the barrier to entry for users without substantial coding experience through extensive example use-case tutorials and simplified installation. In addition to usability, we document added functionality since the release of PlantCV v2, including support for more image types such as fluorescence, thermal, and hyperspectral data. Finally, we describe the development of a new subpackage focused on morphological trait measurements like leaf angle, and demonstrate its utility as compared to more manual methods of data collection.

Schuhl, Haley [Donald Danforth Plant Science Cente↗

Paleosols and the evolution of atmospheric oxygen: a critical review

A number of investigators have used chemical profiles of paleosols to reconstruct the evolution of atmospheric oxygen levels during the course of Earth history (Holland, 1984, 1994; Kirkham and Roscoe, 1993; Ohmoto, 1996). Over the past decade Holland and his co-workers have examined reported paleosols from six localities that formed between 2.75 and 0.45 Ga. They have found that the chemical profiles of these paleosols are consistent with a dramatic change in atmospheric PO2 between 2.2 and 2.0 Ga from < or = 0.002 to > or = 0.03 atm (Holland, 1994). Ohmoto (1996) examined chemical data from twelve reported paleosols ranging in age from 2.9 to 1.8 Ga. He concluded that these chemical profiles indicate that atmospheric PO2 has not changed significantly during the past 3.0 Ga. We seek to resolve the conflict between these reconstructions through a broader examination of the paleosol literature, both to determine which reported paleosols can be definitively identified as such and to determine what these definite paleosols tell us about atmospheric evolution. We here review reports describing over 50 proposed paleosols, all but two are older than 1.7 Ga. Our review indicates that 15 of these reported paleosols can be definitively identified as ancient soils. The behavior of iron uring the formation of these 15 paleosols provides both qualitative and semiquantitative information about the evolution of the redox state of the atmosphere. Every definitely identified pre-2.44 Ga paleosol suffered significant Fe loss during weathering. This loss indicates that atmospheric PO2 was always less than about 5 x l0(-4) atm prior to 2.44 Ga. Analysis of the Hokkalampi paleosol (2.44-2.2 Ga) (Marmo, 1992) and the Ville Marie paleosol (2.38-2.215 Ga) (Rainbird, Nesbitt, and Donaldson, 1990) yield ambiguous results regarding atmospheric PO2. Loss of Fe during the weathering of the 2.245 to 2.203 Ga Hekpoort paleosol (Button, 1979) indicates that atmospheric PO2 was less than 8 x 10(-4) atm shortly before 2.2 Ga. The presence of red beds immediately overlying the Hokkalampi, Ville Marie, and Hekpoort paleosols suggests that by about 2.2 Ga there was an unquantified but substantial amount of oxygen in the atmosphere. Iron loss was negligible during formation of the 2.2 to 2.0 Ga Wolhaarkop (Holland and Beukes, 1990) and Drakenstein (Wiggering and Beukes, 1990) paleosols and during formation of all the later paleosols we previewed. Thus, atmospheric PO2 probably has been > or = 0.03 atm since sometime between 2.2 and 2.0 Ga.

Review, Academic↗

Testing modified gravity at cosmological distances with LISA standard sirens

Modifications of General Relativity leave their imprint both on the cosmic expansion history through a non-trivial dark energy equation of state, and on the evolution of cosmological perturbations in the scalar and in the tensor sectors. Specifically, the modification in the tensor sector gives rise to a notion of gravitational-wave (GW) luminosity distance, different from the standard electromagnetic luminosity distance, that can be studied with standard sirens at GW detectors such as LISA or third-generation ground based experiments. Here, we discuss the predictions for modified GW propagation from some of the best studied theories of modified gravity, such as Horndeski or the more general degenerate higher order scalar-tensor (DHOST) theories, non-local infrared modifications of gravity, bigravity theories and the corresponding phenomenon of GW oscillation, as well as theories with extra or varying dimensions. We show that modified GW propagation is a completely generic phenomenon in modified gravity. We then use a simple parametrization of the effect in terms of two parameters (Ξ 0 , n ), that is shown to fit well the results from a large class of models, to study the prospects of observing modified GW propagation using supermassive black hole binaries as standard sirens with LISA. We build mock source catalogs and perform detailed Markov Chain Monte Carlo studies of the likelihood obtained from LISA standard sirens alone, as well as by combining them with CMB, BAO and SNe data to reduce the degeneracies between cosmological parameters. We find that the combination of LISA with the other cosmological datasets allows one to measure the parameter Ξ 0 that characterizes modified GW propagation to the percent level accuracy, sufficient to test several modified gravity theories. LISA standard sirens can also improve constraints on GW oscillations induced by extra field content by about three orders of magnitude relative to the current capability of ground detectors. We also update the forecasts on the accuracy on H 0 and on the dark-energy equation of state using more recent estimates for the LISA sensitivity.

79 ASTRONOMY AND ASTROPHYSICS↗

Evolution from amino acids - Lunar occurrence of their precursors.

Review of the present state of experimentally based concepts of organic evolution from amino acids. Earlier studies of the synthesis of amino acid precursors from meteoritic material, lunar dust, and terrestrial lava are briefly summarized, and laboratory experiments in which polymers of amino acids were obtained either by direct heating of dry amino acids or by heating aqueous solutions of mixtures of amino acids are described. In particular, a process is described by which alpha-amino acids were made to react to form linear chains of proteinoids. It is concluded that a proteinoid microsystem was a common ancestor of all life on earth.

Fox, S. W.↗