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NASA NTRS1983

Determination of corrections to flow direction measurements obtained with a wing-tip mounted sensor

The nature of corrections for flow direction measurements obtained with a wing-tip mounted sensor was investigated. Corrections for the angle of attack and sideslip, measured by sensors mounted in front of each wing tip of a general aviation airplane, were determined. These flow corrections were obtained from both wind-tunnel and flight tests over a large angle-of-attack range. Both the angle-of-attack and angle-of-sideslip flow corrections were found to be substantial. The corrections were a function of the angle of attack and angle of sideslip. The effects of wing configuration changes, small changes in Reynolds number, and spinning rotation on the angle-of-attack flow correction were found to be small. The angle-of-attack flow correction determined from the static wind-tunnel tests agreed reasonably well with the correction determined from flight tests.

Moul, T. M.↗

NASA NTRS1994

Correlated environmental corrections in TOPEX/POSEIDON, with a note on ionospheric accuracy

Estimates of the effectiveness of an altimetric correction, and interpretation of sea level variability as a response to atmospheric forcing, both depend upon assuming that residual errors in altimetric corrections are uncorrelated among themselves and with residual sea level, or knowing the correlations. Not surprisingly, many corrections are highly correlated since they involve atmospheric properties and the ocean surface's response to them. The full corrections (including their geographically varying time mean values), show correlations between electromagnetic bias (mostly the height of wind waves) and either atmospheric pressure or water vapor of -40%, and between atmospheric pressure and water vapor of 28%. In the more commonly used collinear differences (after removal of the geographically varying time mean), atmospheric pressure and wave height show a -30% correlation, atmospheric pressure and water vapor a -10% correlation, both pressure and water vapor a 7% correlation with residual sea level, and a bit surprisingly, ionospheric electron content and wave height a 15% correlation. Only the ocean tide is totally uncorrelated with other corrections or residual sea level. The effectiveness of three ionospheric corrections (TOPEX dual-frequency, a smoothed version of the TOPEX dual-frequency, and Doppler orbitography and radiopositioning integrated by satellite (DORIS) is also evaluated in terms of their reduction in variance of residual sea level. Smooth (90-200 km along-track) versions of the dual-frequency altimeter ionosphere perform best both globally and within 20 deg in latitude from the equator. The noise variance in the 1/s TOPEX inospheric samples is approximately (11 mm) squared, about the same as noise in the DORIS-based correction; however, the latter has its error over scales of order 10(exp 3) km. Within 20 deg of the equator, the DORIS-based correction adds (14 mm) squared to the residual sea level variance.

Zlotnicki, V.↗

NASA NTRS1996

A New Correction Technique for Strain-Gage Measurements Acquired in Transient-Temperature Environments

Significant strain-gage errors may exist in measurements acquired in transient-temperature environments if conventional correction methods are applied. As heating or cooling rates increase, temperature gradients between the strain-gage sensor and substrate surface increase proportionally. These temperature gradients introduce strain-measurement errors that are currently neglected in both conventional strain-correction theory and practice. Therefore, the conventional correction theory has been modified to account for these errors. A new experimental method has been developed to correct strain-gage measurements acquired in environments experiencing significant temperature transients. The new correction technique has been demonstrated through a series of tests in which strain measurements were acquired for temperature-rise rates ranging from 1 to greater than 100 degrees F/sec. Strain-gage data from these tests have been corrected with both the new and conventional methods and then compared with an analysis. Results show that, for temperature-rise rates greater than 10 degrees F/sec, the strain measurements corrected with the conventional technique produced strain errors that deviated from analysis by as much as 45 percent, whereas results corrected with the new technique were in good agreement with analytical results.

Richards, W. Lance↗

NASA NTRS2011

Correcting Attenuation of Reflectivity in Terminal Doppler Weather Radar

This paper documents the implementation of the algorithm for correcting attenuations in the TDWR reflectivity, and examines the impacts of performing the correction algorithm on the accuracy of the resultant precipitation products on the basis of stage IV gauge-radar analyses over six storm events (four warm season events and two cool season events). Three primary findings are summarized below: 1. Correcting for attenuation tends to improve the overall bias, the conditional bias, and the correlation between the TDWR-based rainfall estimates and stage IV values regardless of season and correction schemes. 2. Attenuation correction is overall beneficial to the accuracy of resulting rainfall estimates for the warm season. By contrast, for the cool season, despite potential improvements in the bias and correlation, attenuation correction can be undesirable when there is clear evidence of bright band enhancement arising from low freezing levels. To elaborate, in these situations spurious high precipitation rates over the melting layer can yield elevated values in specific attenuation factor K, which in turn, may lead to an artificially higher reflectivity adjustment at farther range. 3. Ingesting 3-D spatially variable RUC temperature and imposing a temperature threshold in general tend to degrade the accuracy of corrected rainfall estimates for the warm season. For the cool season, in theory they would help avoid applying correction to areas within and above the melting layer. In practice, due to the variable depth of the melting layer below the freezing level, it is difficult to determine the temperature for the lower boundary of the melting layer a priori.

Ding, Feng↗

NASA NTRS2012

Correction Technique for Raman Water Vapor Lidar Signal-Dependent Bias and Suitability for Water Wapor Trend Monitoring in the Upper Troposphere

The MOHAVE-2009 campaign brought together diverse instrumentation for measuring atmospheric water vapor. We report on the participation of the ALVICE (Atmospheric Laboratory for Validation, Interagency Collaboration and Education) mobile laboratory in the MOHAVE-2009 campaign. In appendices we also report on the performance of the corrected Vaisala RS92 radiosonde measurements during the campaign, on a new radiosonde based calibration algorithm that reduces the influence of atmospheric variability on the derived calibration constant, and on other results of the ALVICE deployment. The MOHAVE-2009 campaign permitted the Raman lidar systems participating to discover and address measurement biases in the upper troposphere and lower stratosphere. The ALVICE lidar system was found to possess a wet bias which was attributed to fluorescence of insect material that was deposited on the telescope early in the mission. Other sources of wet biases are discussed and data from other Raman lidar systems are investigated, revealing that wet biases in upper tropospheric (UT) and lower stratospheric (LS) water vapor measurements appear to be quite common in Raman lidar systems. Lower stratospheric climatology of water vapor is investigated both as a means to check for the existence of these wet biases in Raman lidar data and as a source of correction for the bias. A correction technique is derived and applied to the ALVICE lidar water vapor profiles. Good agreement is found between corrected ALVICE lidar measurments and those of RS92, frost point hygrometer and total column water. The correction is offered as a general method to both quality control Raman water vapor lidar data and to correct those data that have signal-dependent bias. The influence of the correction is shown to be small at regions in the upper troposphere where recent work indicates detection of trends in atmospheric water vapor may be most robust. The correction shown here holds promise for permitting useful upper tropospheric water vapor profiles to be consistently measured by Raman lidar within NDACC (Network for the Detection of Atmospheric Composition Change) and elsewhere, despite the prevalence of instrumental and atmospheric effects that can contaminate the very low signal to noise measurements in the UT.

MOHAVE-2009↗

NASA NTRSDate not supplied

Transonic Correction to Theodorsen's Theory for Oscillating Airfoil in Pitch and Plunge Toward Flutter

This paper presents a transonic correction method for an oscillating airfoil in pitch and plunge. The proposed method applies correction functions to the Theodorsen’s theory to capture the transonic nonlinear aero- dynamics. These correction functions apply necessary corrections to the amplitudes and the phase angles of the unsteady lift and pitching moment coefficients to account for transonic aerodynamics. The proposed method also postulates a correction for the motion of the aerodynamic center which could be induced by moving shocks. A series of unsteady RANS CFD simulations of the airfoil at the mean aerodynamic chord of the Transonic Truss-Braced Wing aircraft are conducted using FUN3D to provide data to construct these transonic correction functions. The computed responses of the unsteady lift and pitching moment coefficients using these transonic correction functions match the CFD simulation results very well even when the pitching moment coefficient is highly nonlinear. A flutter analysis of an airfoil in pitch and plunge illustrates the potential use of the proposed transonic correction method.

Transonic Flutter↗

NASA NTRS2014

Extending 3D Near-Cloud Corrections from Shorter to Longer Wavelengths

Satellite observations have shown a positive correlation between cloud amount and aerosol optical thickness (AOT) that can be explained by the humidification of aerosols near clouds, and/or by cloud contamination by sub-pixel size clouds and the cloud adjacency effect. The last effect may substantially increase reflected radiation in cloud-free columns, leading to overestimates in the retrieved AOT. For clear-sky areas near boundary layer clouds the main contribution to the enhancement of clear sky reflectance at shorter wavelengths comes from the radiation scattered into clear areas by clouds and then scattered to the sensor by air molecules. Because of the wavelength dependence of air molecule scattering, this process leads to a larger reflectance increase at shorter wavelengths, and can be corrected using a simple two-layer model. However, correcting only for molecular scattering skews spectral properties of the retrieved AOT. Kassianov and Ovtchinnikov proposed a technique that uses spectral reflectance ratios to retrieve AOT in the vicinity of clouds; they assumed that the cloud adjacency effect influences the spectral ratio between reflectances at two wavelengths less than it influences the reflectances themselves. This paper combines the two approaches: It assumes that the 3D correction for the shortest wavelength is known with some uncertainties, and then it estimates the 3D correction for longer wavelengths using a modified ratio method. The new approach is tested with 3D radiances simulated for 26 cumulus fields from Large-Eddy Simulations, supplemented with 40 aerosol profiles. The results showed that (i) for a variety of cumulus cloud scenes and aerosol profiles over ocean the 3D correction due to cloud adjacency effect can be extended from shorter to longer wavelengths and (ii) the 3D corrections for longer wavelengths are not very sensitive to unbiased random uncertainties in the 3D corrections at shorter wavelengths.

aerosol optical depth↗

NASA NTRSDate not supplied

Evaluation of Correction Methods for NASA GeneLab Transcriptomic Datasets

Conducting space biology experiments aboard the International Space Station, particularly those utilizing complex model organisms like mice, is expensive and difficult due to limited crew availability, hardware, and space. As a result, sample numbers from these studies are low, reducing the statistical power of any one experiment. Aggregating spaceflight datasets serves as a method to increase sample numbers, allowing for novel insights through bioinformatic analysis of ‘omics data from merged datasets. However, aggregating datasets can introduce unwanted variation including 1) differences in sample handling, processing, and sequencing platforms between datasets (technical variation) as well as 2) differences in experimental design between datasets such as sex or age of the model organism used. In the present study, NASA GeneLab-hosted RNAseq datasets from rodent liver tissues were used to evaluate several statistical methods to correct for this unwanted variation through two approaches, reference-based and standard. The following correction algorithms were applied with (reference-based) and/or without (standard) considering Universal Mouse RNA Reference samples: ComBat and ComBat_seq from the SVA package, median polish, empirical Bayes, and ANOVA-based algorithms from the MBatch package, and negative binomial regression normalization in the DESeq2 package. For each approach, after the correction algorithm was applied, differential gene expression (DGE) analysis of flight and ground control samples was performed with the combined data. The robustness of each tool was evaluated using BatchQC, to determine statistical differences between datasets before and after correction, Principal Component Analysis, to evaluate global gene expression in samples before and after correction, and by comparing DGE analysis of individual datasets and combined datasets before and after correction. The results showed that the reference-based approach introduced several additional (and likely artificial) DEGs when compared with the standard approach. Thus, the most robust standard correction will be implemented in the GeneLab Visualization 2.0 platform when datasets are combined.

GeneLab, RNA-seq, Batch Correction↗

NASA NTRSDate not supplied

Evaluation of Correction Methods for NASA GeneLab Transcriptomic Datasets

Conducting space biology experiments aboard the International Space Station, particularly those utilizing complex model organisms like mice, is expensive and difficult due to limited crew availability, hardware, and space. As a result, sample numbers from these studies are low, reducing the statistical power of any one experiment. Aggregating spaceflight datasets serves as a method to increase sample numbers, allowing for novel insights through bioinformatic analysis of ‘omics data from merged datasets. However, aggregating datasets can introduce unwanted variation including 1) differences in sample handling, processing, and sequencing platforms between datasets (technical variation) as well as 2) differences in experimental design between datasets. In the present study, NASA GeneLab-hosted RNAseq datasets from mouse liver tissues were used to evaluate several statistical methods to correct for this unwanted variation through two approaches, reference-based and standard. The following correction algorithms were applied with (reference-based) and/or without (standard) considering Universal Mouse RNA Reference samples: ComBat and ComBat_seq from the SVA package, median polish, empirical Bayes, and ANOVA-based algorithms from the MBatch package, and negative binomial regression normalization in the DESeq2 package. For each approach, after the correction algorithm was applied, differential gene expression (DGE) analysis of flight and ground control samples was performed with the combined data. The robustness of each tool was evaluated using BatchQC to determine statistical differences between datasets before and after correction, Principal Component Analysis to evaluate global gene expression in samples before and after correction, and by comparing DGE analysis of individual datasets and combined datasets before and after correction. The results showed that the reference-based approach introduced several additional (and likely artificial) DEGs when compared with the respective standard approach. Of the methods tested, standard ComBat and DESeq2 were identified as the most robust correction methods for combining spaceflight mouse liver RNAseq datasets hosted on GeneLab.

GeneLab↗

NASA NTRS1976

Absolute oscillator strengths for the iron group - A correction to the data of Warner for the second spectra and a comment on some of the semiempirical results of Kurucz and Peytremann

It has already been shown that the Fe II absolute oscillator strengths (f-values) measured by Warner (1967) contain a systematic error, the magnitude of which depends on the energy of the transition's upper level. The present paper demonstrates that this error affects all of Warner's oscillator strengths for the second spectra of the iron group and develops a correction formula for Warner's results. A comparison of the corrected f-values with other measured f-values for Ti II, V II, and Fe II indicates that the correction improves the usefulness of Warner's data and that the corrected f-values have no large systematic dependence on wavelength, level energy, or line strength. Solar abundances for iron-group elements computed using the original and corrected f-values are compared with recently suggested abundances, and it is found that the corrected f-values yield more consistent results. Semiempirical oscillator strengths calculated by Kurucz and Peytremann (1975) for Fe I, Ti II, and V II are also compared with measured data to evaluate the accuracy of the calculations. It is found that the absolute scales of these results are roughly correct, but some of them are subject to very large errors.

Smith, P. L.↗

NASA NTRS1982

LANDSAT-D accelerated payload correction subsystem output computer compatible tape format

The NASA GSFC LANDSAT-D Ground Segment (GS) is developing an Accelerated Payload Correction Subsystem (APCS) to provide Thematic Mapper (TM) image correction data to be used outside the GS. This correction data is computed from a subset of the TM Payload Correction Data (PCD), which is downlinked from the spacecraft in a 32 Kbps data stream, and mirror scan correction data (MSCD), which is extracted from the wideband video data. This correction data is generated in the GS Thematic Mapper Mission Management Facility (MMF-T), and is recorded on a 9-track 1600 bit per inch computer compatible tape (CCT). This CCT is known as a APCS Output CCT (AOT). The AOT follows standardized corrections with respect to data formats, record construction and record identification. Applicable documents are delineated; common conventions which are used in further defining the structure, format and content of the AOT are defined; and the structure and content of the AOT are described.

Source record↗

NASA NTRS1987

A model-free method for mass spectrometer response correction

A new method for correction of mass spectrometer output signals is described. Response-time distortion is reduced independently of any model of mass spectrometer behavior. The delay of the system is found first from the cross-correlation function of a step change and its response. A two-sided time-domain digital correction filter (deconvolution filter) is generated next from the same step response data using a regression procedure. Other data are corrected using the filter and delay. The mean squared error between a step response and a step is reduced considerably more after the use of a deconvolution filter than after the application of a second-order model correction. O2 consumption and CO2 production values calculated from data corrupted by a simulated dynamic process return to near the uncorrupted values after correction. Although a clean step response or the ensemble average of several responses contaminated with noise is needed for the generation of the filter, random noise of magnitude not above 0.5 percent added to the response to be corrected does not impair the correction severely.

Shykoff, Barbara E.↗

NASA NTRS1992

Present status and future prospects for ionospheric propagation corrections for precise time transfer using GPS

The ionosphere can be the greatest variable source of error in precise time transfer using Global Positioning System (GPS) satellites. For single frequency GPS users, the ionospheric correction algorithm can provide an approximate 50 percent r.m.s. correction to the time delay, but users who desire a more complete correction must make actual measurements of ionospheric time delay along the path to the GPS satellite. Fortunately, at least three commercial GPS receivers, specifically designed to measure and correct for ionospheric time delay, are now, or soon will be, available. Initial operation with two different types of GPS ionospheric receivers demonstrated a high degree of accuracy in measuring the ionospheric group delay. Results of these measurements are presented. For those who use a model to correct for ionospheric time delay, it is tempting to use daily values of solar 10.7 cm radio flux to correct a monthly average ionospheric time delay model for each day's operation. The results of correlation of daily maximum ionospheric time delay against solar radio flux values show a poor correlation will be obtained by this procedure. Prospects for improving ionospheric corrections during the declining phase of the present solar cycle are discussed.

Klobuchar, John A.↗

NASA NTRS1997

Correction of Rayleigh Scattering Effects in Cloud Optical Thickness Retrievals

We present results that demonstrate the effects of Rayleigh scattering on the 9 retrieval of cloud optical thickness at a visible wavelength (0.66 Am). The sensor-measured radiance at a visible wavelength (0.66 Am) is usually used to infer remotely the cloud optical thickness from aircraft or satellite instruments. For example, we find that without removing Rayleigh scattering effects, errors in the retrieved cloud optical thickness for a thin water cloud layer (T = 2.0) range from 15 to 60%, depending on solar zenith angle and viewing geometry. For an optically thick cloud (T = 10), on the other hand, errors can range from 10 to 60% for large solar zenith angles (0-60 deg) because of enhanced Rayleigh scattering. It is therefore particularly important to correct for Rayleigh scattering contributions to the reflected signal from a cloud layer both (1) for the case of thin clouds and (2) for large solar zenith angles and all clouds. On the basis of the single scattering approximation, we propose an iterative method for effectively removing Rayleigh scattering contributions from the measured radiance signal in cloud optical thickness retrievals. The proposed correction algorithm works very well and can easily be incorporated into any cloud retrieval algorithm. The Rayleigh correction method is applicable to cloud at any pressure, providing that the cloud top pressure is known to within +/- 100 bPa. With the Rayleigh correction the errors in retrieved cloud optical thickness are usually reduced to within 3%. In cases of both thin cloud layers and thick ,clouds with large solar zenith angles, the errors are usually reduced by a factor of about 2 to over 10. The Rayleigh correction algorithm has been tested with simulations for realistic cloud optical and microphysical properties with different solar and viewing geometries. We apply the Rayleigh correction algorithm to the cloud optical thickness retrievals from experimental data obtained during the Atlantic Stratocumulus Transition Experiment (ASTEX) conducted near the Azores in June 1992 and compare these results to corresponding retrievals obtained using 0.88 Am. These results provide an example of the Rayleigh scattering effects on thin clouds and further test the Rayleigh correction scheme. Using a nonabsorbing near-infrared wavelength lambda (0.88 Am) in retrieving cloud optical thickness is only applicable over oceans, however, since most land surfaces are highly reflective at 0.88 Am. Hence successful global retrievals of cloud optical thickness should remove Rayleigh scattering effects when using reflectance measurements at 0.66 Am.

Wang, Meng-Hua↗

NASA NTRS2003

Assessment, Validation, and Refinement of the Atmospheric Correction Algorithm for the Ocean Color Sensors

The primary focus of this proposed research is for the atmospheric correction algorithm evaluation and development and satellite sensor calibration and characterization. It is well known that the atmospheric correction, which removes more than 90% of sensor-measured signals contributed from atmosphere in the visible, is the key procedure in the ocean color remote sensing (Gordon and Wang, 1994). The accuracy and effectiveness of the atmospheric correction directly affect the remotely retrieved ocean bio-optical products. On the other hand, for ocean color remote sensing, in order to obtain the required accuracy in the derived water-leaving signals from satellite measurements, an on-orbit vicarious calibration of the whole system, i.e., sensor and algorithms, is necessary. In addition, it is important to address issues of (i) cross-calibration of two or more sensors and (ii) in-orbit vicarious calibration of the sensor-atmosphere system. The goal of these researches is to develop methods for meaningful comparison and possible merging of data products from multiple ocean color missions. In the past year, much efforts have been on (a) understanding and correcting the artifacts appeared in the SeaWiFS-derived ocean and atmospheric produces; (b) developing an efficient method in generating the SeaWiFS aerosol lookup tables, (c) evaluating the effects of calibration error in the near-infrared (NIR) band to the atmospheric correction of the ocean color remote sensors, (d) comparing the aerosol correction algorithm using the singlescattering epsilon (the current SeaWiFS algorithm) vs. the multiple-scattering epsilon method, and (e) continuing on activities for the International Ocean-Color Coordinating Group (IOCCG) atmospheric correction working group. In this report, I will briefly present and discuss these and some other research activities.

Wang, Menghua↗

NASA NTRS2016

Atmospheric Correction for Satellite Ocean Color Radiometry

This tutorial is an introduction to atmospheric correction in general and also documentation of the atmospheric correction algorithms currently implemented by the NASA Ocean Biology Processing Group (OBPG) for processing ocean color data from satellite-borne sensors such as MODIS and VIIRS. The intended audience is graduate students or others who are encountering this topic for the first time. The tutorial is in two parts. Part I discusses the generic atmospheric correction problem. The magnitude and nature of the problem are first illustrated with numerical results generated by a coupled ocean-atmosphere radiative transfer model. That code allow the various contributions (Rayleigh and aerosol path radiance, surface reflectance, water-leaving radiance, etc.) to the topof- the-atmosphere (TOA) radiance to be separated out. Particular attention is then paid to the definition, calculation, and interpretation of the so-called "exact normalized water-leaving radiance" and its equivalent reflectance. Part I ends with chapters on the calculation of direct and diffuse atmospheric transmittances, and on how vicarious calibration is performed. Part II then describes one by one the particular algorithms currently used by the OBPG to effect the various steps of the atmospheric correction process, viz. the corrections for absorption and scattering by gases and aerosols, Sun and sky reflectance by the sea surface and whitecaps, and finally corrections for sensor out-of-band response and polarization effects. One goal of the tutorial-guided by teaching needs- is to distill the results of dozens of papers published over several decades of research in atmospheric correction for ocean color remote sensing.

MODIS↗

NASA NTRS2017

GEO-LEO Reflective Band Inter-Comparison with BRDF and Atmospheric Scattering Corrections

The inter-comparison of the reflective solar bands (RSB) between the instruments onboard a geostationary orbit satellite and a low Earth orbit satellite is very helpful in assessing their calibration consistency. Himawari-8 was launched 7 October 2014 and GOES-R was launched on 19 November 2016. Unlike previous GOES instruments, the Advanced Himawari Imager (AHI) on Himawari-8 and the Advanced Baseline Imager (ABI) on GOES-R have onboard calibrators for the RSB. Independent assessment of calibration is nonetheless important to enhance their product quality. MODIS (Moderate Resolution Imaging Spectroradiometer) and VIIRS (Visible Infrared Imaging Radiometer Suite) can provide good references for sensor calibration. In this work, the inter-comparison between AHI and VIIRS is performed over a pseudo-invariant target. The use of stable and uniform calibration sites provides comparison with accurate adjustment for band spectral difference, reduction of impact from pixel mismatching, and consistency of BRDF (Bidirectional Reflectance Distribution Function) and atmospheric correction. The site used is the Strzelecki Desert in Australia. Due to the difference in solar and view angles, two corrections must be applied in order to compare the measurements. The first is the atmospheric scattering correction applied to the top of atmosphere reflectance measurements. The second correction is applied to correct the BRDF effect. The atmospheric correction is performed using a vector version of the Second Simulation of a Satellite Signal in the Solar Spectrum (6SV) model and the BRDF correction is performed using a semi-empirical model. Our results show that AHI band 1 (0.47 microns) has a good agreement with VIIRS band M3 within 0.15 percent. AHI band 5 (1.61 microns) shows the largest difference (5.09 percent) with VIIRS band M10, while AHI band 5 shows the least difference (1.87 percent) in comparison with VIIRS band I3. The methods developed in this work can also be directly applied to assess GOES-16/ABI (Geostationary Operational Environment Satellite16 / Advanced Baseline Imager) calibration consistency, a topic we will address in the future.

The inter-comparison of the reflective solar bands↗

NASA NTRSDate not supplied

Combining RNA-SEQ Datasets from NASA GENELAB: An Evaluation of Correction Methods

Background: Conducting space biology experiments aboard the International Space Station, particularly those utilizing complex model organisms like mice, is expensive and difficult due to limited crew availability, hardware, and space. As a result, sample numbers from these studies are low, reducing the statistical power of any one experiment. Aggregating spaceflight datasets serves as a method to increase sample numbers, allowing for novel insights through bioinformatic analysis of ‘omics data from merged datasets. However, aggregating datasets can introduce unwanted variation including 1) differences in sample handling, processing, and sequencing platforms between datasets (technical variation) as well as 2) differences in experimental design between datasets. Methods: In the present study, NASA GeneLab-hosted RNAseq datasets from mouse liver tissues were used to evaluate several statistical methods to correct for this unwanted variation through two approaches, reference-based and standard. The following correction algorithms were applied with (reference-based) and/or without (standard) considering Universal Mouse RNA Reference samples: ComBat and ComBat_seq from the SVA package, the median polish, empirical Bayes, and ANOVA-based algorithms from the MBatch package, and negative binomial regression normalization in the DESeq2 package. For each approach, after the correction algorithm was applied, differential gene expression (DGE) analysis of flight and ground control samples was performed with the combined data. The robustness of each tool was evaluated using BatchQC to determine statistical differences between datasets before and after correction, Principal Component Analysis to evaluate global gene expression in samples before and after correction, and by comparing DGE analysis of individual datasets and combined datasets before and after correction. Results: The results showed that the reference-based approach introduced several additional (and likely artificial) differentially expressed genes when compared with the respective standard approach. Conclusions: Of the methods tested, standard ComBat_seq and DESeq2 were identified as the most robust correction methods for combining spaceflight mouse liver RNAseq datasets hosted on GeneLab.

Finsam Samson↗