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NASA NTRS1993

Use of spectral analogy to evaluate canopy reflectance sensitivity to leaf optical property

The spectral variation of canopy reflectance is mostly governed by the absorption properties of the elements, hence the leaves, since their intrinsic scattering properties show very little spectral variation. The relationship between canopy reflectance and leaf reflectance measured at the red edge over sugar beet canopies was used to simulate canopy reflectance from leaf reflectance spectra measured over the whole spectral domain. The results show that the spectral analogies found allows accurate reconstruction of canopy reflectance spectra. Explicit assumptions about the very low spectral variation of leaf intrinsic scattering properties are thus indirectly justified. The sensitivity of canopy reflectance (rho(sub c)) to leaf optical properties can then be investigated from concurrent spectral variations of canopy (delta rho(sub c)/delta lambda) and leaf reflectance (delta rho(sub l)/delta lambda): (delta rho(sub c))/(delta rho(sub l)) = ((delta rho(sub c))/(delta lambda) ((delta rho( sub l))/(delta lambda))(sup -1)). This expression is strictly valid only when the optical properties of the soil background or the other vegetation elements such as bark are either spectrally flat or do not contribute significantly to canopy reflectance. Simulations using the SAIL and PROSPECT models demonstrate that the sensitivity of canopy reflectance to leaf reflectance is significant for large vegetation cover fractions in spectral domains where absorption is low. In these conditions, multiple, scattering enhances the leaf absorption features by a factor that can be greater than 2.0. To override the limitations of the SAIL model for the description of the canopy architecture, we tested the previous findings on experimental data. Concurrent canopy and leaf reflectance spectra were measured for a range of sugar beet canopies. The results show good agreement with the theoretical findings. Conclusions are drawn about the applicability of these findings, with particular attention to the potential detectability of leaf biochemical composition from canopy reflectance sensed from space.

Baret, Frederic↗

NASA NTRS2021

Discrete anisotropic radiative transfer modelling of solar-induced chlorophyll fluorescence: Structural impacts in geometrically explicit vegetation canopies

Solar-induced fluorescence (SIF) is a subtle but informative optical signal of vegetation photosynthesis. Remotely sensed SIF integrates environmental, physiological and structural changes that alter photosynthesis at leaf, plant and canopy scales. Radiative transfer models are ideally suited to investigate the complex sources of variability in the SIF signal to guide the interpretation of SIF retrievals from airborne and space-borne platforms. Here, we coupled the Fluspect-Cx model of leaf optical properties and chlorophyll-a fluorescence with the Discrete Anisotropic Radiative Transfer (DART) model to upscale SIF from individual leaves to three-dimensional (3D) structurally explicit canopies. For one-dimensional homogeneous (turbid-like) canopies, DART-SIF was nearly identical to SIF simulated in two existing models, SCOPE and mSCOPE (RMSE <0.221 W./sq.m.μm.sr). DART simulations in geometrically explicit 3D canopies offered four important insights regarding the influence of vegetation structure on the multi-angular top-of-canopy SIF signal. First, changes in the 3D canopy architecture of maize crops, represented by leaf density (leaf area index), and plant clumping (canopy closure) had a larger impact on SIF than the modelled photosynthetic efficiency distinction between sun-adapted and shade-adapted foliage. Second, clumping of leaves at the crop and stand levels was identified as one of the key driving factors of multi-angular anisotropy of red and far-red SIF (686 and 740 nm) for both maize and eucalyptus canopies. Third, non-photosynthetic woody material had a significant impact on top-of-canopy SIF in modelled 3D forest stands. Wood shadowing decreased the photosynthetically active radiation absorbed by green leaves, and consequently the SIF emissions, by 10% in sparse and 17% in dense eucalyptus stands. The wood obstruction (blocking) effect, quantified as a relative difference of SIF escape probabilities from canopies with and without wood in the nadir viewing direction, decreased far-red SIF by 4–6% but it had a smaller and sometimes positive influence (by less than 2%) on red SIF. Fourth, DART 3D radiative budget profiles revealed that the majority of the SIF signal from a dense eucalyptus stand originated from the top 25% of the simulated canopy. Interestingly, the introduction of bark-covered woody elements did not alter the simulated balance and omnidirectional escape factor of red SIF in this upper canopy part but did raise significantly both of them in case of far-red SIF. These results demonstrate the importance of 3D radiative transfer and radiative budget simulations for investigating SIF interactions in structurally complex plant canopies and for a better understanding of spatiotemporal and multi-angular remote sensing SIF observations.

Zbyněk Malenovský↗

DOE OSTI2023

Mapping foliar photosynthetic capacity in sub-tropical and tropical forests with UAS-based imaging spectroscopy: Scaling from leaf to canopy

Accurate understanding of the variability in foliar physiological traits across landscapes is critical to improve parameterization and evaluation of terrestrial biosphere models (TBMs) that seek to represent the response of terrestrial ecosystems to a changing climate. Numerous studies suggest imaging spectroscopy can characterize foliar biochemical and morphological traits at the canopy scale, but there is only limited evidence for retrieving canopy photosynthetic capacity (e.g., maximum carboxylation rate, V c,max and maximum electron transport rate, J max ). Moreover, the effect of canopy structure within forest communities on scaling up spectra-trait relationships from leaf to canopy level is not well known. To advance the spectra-trait approach and enable the estimation of key traits using remote sensing, we collected imaging spectroscopy data from an Unoccupied Aerial System (UAS) platform over two forest sites in China (a subtropical forest in Mt. Dinghu and a tropical rainforest in Xishuangbanna). At these sites, we also collected ground measurements of leaf spectra and traits, including biochemical (leaf nitrogen, phosphorus, chlorophyll, and water content), morphological (leaf mass per area, LMA) and physiological (V c,max25 and J max25 ) traits (n=135 tree-crowns from 42 species across two sites). Using a partial least-squares regression (PLSR) approach, we built and tested spectra-trait models with repeated cross-validation. The spectral models developed with leaf spectra were directly transferred to canopy spectra to evaluate the effect of canopy structure. Here we further applied canopy spectral models to map these traits at individual tree-crown scale. The results demonstrate that (1) UAS-based canopy spectra can be used to estimate V c,max (R 2 =0.55, nRMSE=11.79%), Jmax (R 2 =0.54, nRMSE=12.34%), and five additional foliar traits (R 2 =0.38-0.60, nRMSE=10.11-13.56%) at the tree-crown scale with demonstrated generalizability across two sites; (2) canopy structure strongly affects the spectratrait relationships from leaf to canopy level, but the effects vary considerably across foliar traits and cannot be well captured by the 4SAIL canopy radiative transfer model. UAS-based imaging spectroscopy maps large variability in all foliar traits (including physiological traits) with spatially explicit information, reproducing the field-observed inter- and intra-specific variations. These results demonstrate the capability of using UAS-based imaging spectroscopy for characterizing the variability of foliar physiological traits at individual tree-crown scale over forest landscapes and highlight the similar generalizability but different biophysical mechanisms underlying spectra-trait relationships at leaf and canopy levels.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2021

Canopy position influences the degree of light suppression of leaf respiration in abundant tree genera in the Amazon Forest

Leaf respiration in the dark (R dark ) and light (R day ) is poorly characterized in diverse tropical ecosystems, and little to no information exists on the degree of light suppression in common tree species within the Amazon basin, and their dependences upon plant functional traits and position within the canopy. We quantified R dark and apparent R day using the Kok method and measured key leaf traits in 26 tree individuals of different species distributed in three different canopy positions: canopy, lower canopy, and understory. To explore the relationships between the leaf traits we used the standardized major axis (SMA). We found that canopy trees had significantly higher rates of R dark and R day than trees in the understory. The difference between R dark and R day (the light suppression of respiration) was greatest in the understory (68 ± 9%, 95% CI) and lower canopy (49 ± 9%, 95% CI) when compared to the canopy (37 ± 10%, 95% CI). We also found that R day was significantly and strongly correlated with R dark (p < 0.001) for all the canopy positions. Also, leaf mass per area (LMA) and leaf Phosphorus concentration (P) had a significant relationship with R dark (p < 0.001; p = 0.003), respectively. In addition, a significant relationship was found for LMA in the canopy and lower canopy positions (p = 0.009; p = 0.048) while P was only significant in the canopy (p = 0.044). Finally, no significant relationship was found between R dark and nitrogen, sugars, and starch. Our results highlight the importance of including representation of the light suppression of leaf respiration in terrestrial biosphere models and also of accounting for vertical gradients within forest canopies and connections with functional traits.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2022

Vegetation clumping modulates global photosynthesis through adjusting canopy light environment

Abstract The spatial dispersion of photoelements within a vegetation canopy, quantified by the clumping index (CI), directly regulates the within‐canopy light environment and photosynthesis rate, but is not commonly implemented in terrestrial biosphere models to estimate the ecosystem carbon cycle. A few global CI products have been developed recently with remote sensing measurements, making it possible to examine the global impacts of CI. This study deployed CI in the radiative transfer scheme of the Community Land Model version 5 (CLM5) and used the revised CLM5 to quantitatively evaluate the extent to which CI can affect canopy absorbed radiation and gross primary production (GPP), and for the first time, considering the uncertainty and seasonal variation of CI with multiple remote sensing products. Compared to the results without considering the CI impact, the revised CLM5 estimated that sunlit canopy absorbed up to 9%–15% and 23%–34% less direct and diffuse radiation, respectively, while shaded canopy absorbed 3%–18% more diffuse radiation across different biome types. The CI impacts on canopy light conditions included changes in canopy light absorption, and sunlit–shaded leaf area fraction related to nitrogen distribution and thus the maximum rate of Rubisco carboxylase activity ( V cmax ), which together decreased photosynthesis in sunlit canopy by 5.9–7.2 PgC year −1 while enhanced photosynthesis by 6.9–8.2 PgC year −1 in shaded canopy. With higher light use efficiency of shaded leaves, shaded canopy increased photosynthesis compensated and exceeded the lost photosynthesis in sunlit canopy, resulting in 1.0 ± 0.12 PgC year −1 net increase in GPP. The uncertainty of GPP due to the different input CI datasets was much larger than that caused by CI seasonal variations, and was up to 50% of the magnitude of GPP interannual variations in the tropical regions. This study highlights the necessity of considering the impacts of CI and its uncertainty in terrestrial biosphere models.

59 BASIC BIOLOGICAL SCIENCES↗

NASA NTRS2022

Quantifying Mangrove Canopy Regrowth and Recovery After Hurricane Irma With Large-Scale Repeat Airborne Lidar in the Florida Everglades

Hurricane Irma caused significant damages to mangrove forested wetlands in south Florida, including defoliation, tree snapping, and uprooting. Previous studies have used optical satellite imagery to estimate large-scale forest disturbance and resilience patterns. However, satellite images alone cannot provide measurements of vertical mangrove structure. In this study, we used dense point cloud data collected by NASA Goddard’s LiDAR, Hyperspectral, and Thermal (G-LiHT) airborne imager before (March 2017) and after (December 2017 and March 2020) Hurricane Irma to quantify the recovery, or lack thereof, of the three-dimensional (3D) mangrove forest structure. Recent resilience and vulnerability models developed from Landsat time series following the storm were used to group the lidar data into distinct disturbance-recovery classes. We then analyzed lidar-based forest canopy within each of the recovery classes to test a suite of forest structural characteristics. Our results indicate that 77.0 % of the survey area experienced canopy height loss three months after Hurricane Irma, whereby the majority of canopy height loss occurred in areas with the tallest mangrove forests (i.e., 15–25 m tall). Our analysis shows that the mangrove canopy height in South Florida increased by an average 0.26 m from December 2017 to March 2020, with most of the forest (84.7 % of the survey area) experiencing canopy height regrowth. However, only 38.1 % of the survey area has recovered to pre-storm canopy height. The distribution of canopy height was significantly altered by Hurricane Irma in the low and intermediate resilience classes, but were not significantly different 2.5 years later. Indeed, in areas of low resilience, little to no vertical change has occurred suggesting the absence of canopy regrowth and natural regeneration. Conversely, mangroves in high resilience class, which are dominated by shorter canopies (<5 m), were not heavily damaged by the storm and have maintained the same structural attributes as those before Hurricane Irma. Our findings highlight that hurricane disturbances significantly alter mangrove forest canopy structure, but recovery of vertical structure varies by resilience classes, species composition, and canopy height.

Lidar↗

DOE OSTI2025

Combining geometric-optical and spectral invariants theories for modeling canopy fluorescence anisotropy

The spectral invariants theory ( p -theory) has received much attention in the field of quantitative remote sensing over the past few decades and has been adopted for modeling of canopy solar-induced chlorophyll fluorescence (SIF). However, the spectral invariant properties (SIP) in simple analytical formulae have not been applied for modeling canopy fluorescence anisotropy primarily because they are parameterized in terms of leaf total scattering, which precludes the differentiation between forward and backward leaf SIF emissions. In this study, we have developed the canopy-SIP SIF model by combining geometric-optical (GO) theory to account for asymmetric leaf SIF forward and backward emissions at the first-order scattering and by modeling multiple scattering based on the p-theory, thus avoiding the dependence on radiative transfer models. The applicability of the model simulations especially over 3D heterogeneous canopies was improved by incorporating canopy structure through multi-angular clumping index, and by modeling single scattering from the four components of the scene in view according to the GO approach. The results show good consistency with both the state-of-the-art SIF models and multi-angular field SIF observations over grass and chickpea canopies. Further, the coefficient of determination (R²) between the simulated SIF and field measurements was 0.75 (red) and 0.74 (far-red) for chickpea, and 0.65 (both red and far-red) for grass. The average relative error was approximately 3% for 1D homogeneous scenes when comparing the canopy-SIP SIF model simulations to the SCOPE model simulations, and around 4% for the 3D heterogeneous scene when comparing to the LESS model simulations. The results indicate that the proposed approach for separating asymmetric leaf SIF emissions is a robust way to keep a balance between satisfactory simulation accuracy and efficiency. Model simulations suggest that neglecting the leaf SIF asymmetry can lead to an underestimation of canopy red SIF by 6.3% to 42.6% for various leaf biochemical and canopy structural parameters. This study presents a simple but efficient analytical approach for canopy fluorescence modeling, with potential for large-scale canopy fluorescence simulations.

3D heterogeneous structure↗

DOE OSTI2025

Oceanic mixing and waves in the presence of a suspended canopy

Large-eddy simulations are analysed to determine the influence of suspended canopies, such as those formed in macroalgal farms, on ocean mixed layer (OML) deepening and internal wave generation. In the absence of a canopy, we show that Langmuir turbulence, when compared with wind-driven shear turbulence, results in a deeper OML and more pronounced internal waves beneath the OML. Subsequently, we examine simulations with suspended canopies of varying densities located in the OML, in the presence of a background geostrophic current. Intensified turbulence occurs in the shear layer at the canopy’s bottom edge, arising from the interaction between the geostrophic current and canopy drag. Structures resembling Kelvin–Helmholtz (KH) instability emerge as the canopy shear layer interacts with the underlying stratification, radiating internal waves beneath the OML. Both intensified turbulence and lower-frequency motions associated with KH-type structures are critical factors in enhancing mixing. Consequently, the OML depth increases by up to a factor of two compared with cases without a canopy. Denser canopies and stronger geostrophic currents lead to more pronounced KH-type structures and internal waves, stronger turbulence and greater OML deepening. Additionally, vertical nutrient transport is enhanced as the OML deepens due to the presence of the canopy. Considering that the canopy density investigated in this study closely represents offshore macroalgal farms, these findings suggest a mechanism for passive nutrient entrainment conducive to sustainable farming. Overall, this study reveals the intricate interactions between the suspended canopy, turbulent mixing and stratification, underscoring their importance in reshaping OML characteristics.

Bo, Tong (ORCID:0000000260300561)↗

DOE OSTI2021

Unpacking the drivers of diurnal dynamics of sun-induced chlorophyll fluorescence (SIF): Canopy structure, plant physiology, instrument configuration and retrieval methods

Sun-induced chlorophyll fluorescence (SIF) from spaceborne sensors is a promising tool for global carbon cycle monitoring, but its application is constrained by insufficient understanding of the drivers underlying diurnal SIF dynamics. SIF measurements from ground-based towers can reveal diurnal SIF dynamics across biomes and environmental conditions; however, meaningful interpretation of diurnal variations requires disentangling impacts from canopy structure, plant physiology, instrument configuration and retrieval methods, which often interact with and confound each other. This study aims to unpack these drivers using 1) concurrent ground and airborne canopy-scale and leaf-scale measurements at a corn field, 2) a mechanistic SIF model that explicitly considers the dynamics of photochemistry (via the fraction of open photosystem II reaction centers, qL) and photoprotection (via nonphotochemical quenching, NPQ) as well as their interactive dependence on the sub-canopy light environment, and 3) cross-comparison of SIF instrument configurations and retrieval methods. We found that crop row orientations and sun angles can introduce a distinctive midday dip in SIF in absence of stress, due to a midday drop of absorbed photosynthetically active radiation (APAR) when crop rows are north-south oriented. Canopy structure caused distinctive responses in both qL and NPQ at different positions within the vertical canopy that collectively influenced fluorescence quantum yield (Φ F ) at the leaf scale. Once integrated at the canopy scale, diurnal dynamics of both APAR and canopy escape probability (ε) are critical for accurately shaping diurnal SIF variations. While leaf-level qL and NPQ exhibited strong diurnal dynamics, their influence was attenuated at the canopy scale due to opposing effects on SIF at different canopy layers. Furthermore, different system configurations (i.e., bi-hemispherical vs. hemispherical-conical) and retrieval methods can bias the SIF magnitude and distort its diurnal shapes, therefore confounding the interpretation of inherent strength and dynamics of SIF emission. Our findings demonstrate the importance of crop row structures, interactive variations in canopy structure and plant physiology, instrument configuration, and retrieval method in shaping the measured dynamics of diurnal SIF. This study highlights the necessity to account for these factors to accurately interpret satellite SIF, and informs future synthesis work with different SIF instrumentation and retrieval methods across sites.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2023

Topography and canopy cover influence soil organic carbon composition and distribution across a forested hillslope in the discontinuous permafrost zone

This dataset contains data used for the paper "Topography and canopy cover influence soil organic carbon composition and distribution across a forested hillslope in the discontinuous permafrost zone". The Related References field will be updated with a full citation when available. Topography and canopy cover influence ground temperature in warming permafrost landscapes, yet soil temperature heterogeneity introduced by meso-topographic slope positions, microtopographic differences in vegetation cover, and the subsequent impact of contrasting temperature conditions to soil organic carbon (SOC) dynamics are understudied. Buffering of permafrost-affected soils against warming air temperatures in boreal forests can reflect surface soil characteristics (e.g., thickness of organic material) as well as the degree and type of canopy cover (e.g., open cover vs closed cover). Both landscape and soil properties interact to determine meso- and micro-scale heterogeneity of ground warming. We sampled a hillslope catena transect in a discontinuous permafrost zone near Fairbanks, Alaska to test the small-scale (1 to 3 meter) impacts of slope position and cover type on soil organic matter composition. Mineral active layer samples were collected from backslope, low backslope, and footslope positions at depths spanning 19 to 60 cm. We examined soil mineralogical composition, soil moisture, total carbon and nitrogen content, and organic mat thickness in conjunction with an assessment of SOC composition using Fourier-transform ion Cyclotron Resonance Mass Spectrometry (FT-ICR-MS). Soils in the footslope position had a higher relative contribution of lignin-like compounds while backslope soils had more aliphatic and condensed aromatic compounds as determined by FT-ICR-MS. The effect of open versus closed tree canopy cover varied with slope position. On the backslope, we found higher oxidation of molecules under open cover compared with closed cover, indicating an effect of warmer soil temperature on decomposition. Little to no effect of canopy was observed for soils at the footslope position, which we attributed, in part, to the strong impact of soil moisture content in SOC dynamics in the water-gathering footslope position. The thin organic mat under open cover on the backslope position may have contributed to differences in soil temperature and thus SOC oxidation under open and closed canopy. Here, the thinner organic mat did not appear to buffer the underlying soil against warm season air temperatures and thus increased SOC decomposition as indicated by higher oxidation of SOC molecules and a lower contribution of simple molecules under open cover compared with the closed canopy sites. Our findings suggest that the role of canopy cover in SOC dynamics varies as a function of landscape position and soil properties, namely organic mat thickness and soil moisture. Condition-specific heterogeneity of SOC composition under open and closed canopy cover highlights the protective effect of canopy cover for soils on backslope positions. This dataset contains a compressed (.zip) archive of the data and R scripts used for this manuscript. The dataset includes files in .csv format, which can be accessed and processed using MS Excel or R. This archive can also be accessed on GitHub at https://github.com/Erin-Rooney/Y1_fairbanks (DOI: 10.5281/zenodo.8071247).

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2023

Improving estimates of sub-daily gross primary production from solar-induced chlorophyll fluorescence by accounting for light distribution within canopy

Solar-induced chlorophyll fluorescence (SIF) has long been regarded as a proxy for photosynthesis and has shown superiority in estimating gross primary production (GPP) compared to traditional vegetation indices, especially in evergreen ecosystems. However, current SIF-based GPP estimations regard the canopy as a large leaf and seldom consider the impact of interactions among light, canopy structure, and leaf physiology. In this study, we proposed GPP estimation models with different descriptions of light–structure–physiology interactions (including the layered model, the two-leaf model, and the layered two-leaf model) and compared their performances with the big-leaf model using half-hourly (or hourly) observations at evergreen needleleaf forest sites. First, we found that the big-leaf model underestimated GPP, especially at noon. All models showed higher accuracy than that of the big-leaf model. Second, we investigated the diurnal dynamics of GPP estimations in each canopy layer and found that models with a two-leaf assumption captured the diurnal variations in GPP better than that with the layered assumption. Here we also deduced that the poor performance of the big-leaf model was related to its overestimation of the overall light stress on the redox state of PSII reaction centers (qL). Finally, we noticed that the qL at the canopy scale had lower sensitivity to light change than the single-leaf qL and that the light response of canopy-scale qL was influenced by the leaf area index during seasonal cycles. Overall, this study describes methods to accurately estimate sub-daily GPP from SIF in evergreen needleleaf forests and demonstrates that the interactions among light, canopy structure, and leaf physiology regulate the SIF-GPP relationship at the canopy scale. Further, it indicates the need to consider the description of light distribution within the canopy in next-generation terrestrial biosphere models, even if they incorporate SIF to constrain their parameterization. Thus, upscaling the established leaf-scale mechanistic SIF-GPP relationship or findings to canopy-scale applications still requires much work, especially when there are significant changes in environmental conditions and their within-canopy distributions.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2022

Challenges and Capabilities in Estimating Snow Mass Intercepted in Conifer Canopies With Tree Sway Monitoring

Snowpack accumulation in forested watersheds depends on the amount of snow intercepted in the canopy and its partitioning into sublimation, unloading, and melt. A lack of canopy snow measurements limits our ability to evaluate models that simulate canopy processes and predict snowpack. We tested whether monitoring changes in wind-induced tree sway is a viable technique for detecting snow interception and quantifying canopy snow water equivalent (SWE). Over a 6 year period in Colorado, we monitored hourly sway of two conifers, each instrumented with an accelerometer sampling at 12 Hz. We developed an approach to distinguish changes in sway frequency due to thermal effects on tree rigidity versus intercepted snow mass. Over 60% of days with canopy snow had a sway signal that could not be distinguished from thermal effects. However, larger changes in tree sway could not generally be attributed to thermal effects, and canopy snow was present 93%–95% of the time, as confirmed with classified PhenoCam imagery. Using sway tests, we converted changes in sway to canopy SWE, which were correlated with total snowstorm amounts from a nearby SNOTEL site (Spearman r = 0.72 to 0.80, p < 0.001). Greater canopy SWE was associated with storm temperatures between -7°C and 0°C and wind speeds less than 4 m s -1 . Lower canopy SWE prevailed in storms with lower temperatures and higher wind speeds. Monitoring tree sway is a viable approach for quantifying canopy SWE, but challenges remain in converting changes in sway to mass and distinguishing thermal and snow mass effects on tree sway.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2020

Integrating high resolution drone imagery and forest inventory to distinguish canopy and understory trees and quantify their contributions to forest structure and dynamics

Tree growth and survival differ strongly between canopy trees (those directly exposed to overhead light), and understory trees. However, the structural complexity of many tropical forests makes it difficult to determine canopy positions. The integration of remote sensing and ground-based data enables this determination and measurements of how canopy and understory trees differ in structure and dynamics. Here we analyzed 2 cm resolution RGB imagery collected by a Remotely Piloted Aircraft System (RPAS), also known as drone, together with two decades of bi-annual tree censuses for 2 ha of old growth forest in the Central Amazon. We delineated all crowns visible in the imagery and linked each crown to a tagged stem through field work. Canopy trees constituted 40% of the 1244 inventoried trees with diameter at breast height (DBH) > 10 cm, and accounted for ~70% of aboveground carbon stocks and wood productivity. The probability of being in the canopy increased logistically with tree diameter, passing through 50% at 23.5 cm DBH. Diameter growth was on average twice as large in canopy trees as in understory trees. Growth rates were unrelated to diameter in canopy trees and positively related to diameter in understory trees, consistent with the idea that light availability increases with diameter in the understory but not the canopy. The whole stand size distribution was best fit by a Weibull distribution, whereas the separate size distributions of understory trees or canopy trees > 25 cm DBH were equally well fit by exponential and Weibull distributions, consistent with mechanistic forest models. The identification and field mapping of crowns seen in a high resolution orthomosaic revealed new patterns in the structure and dynamics of trees of canopy vs. understory at this site, demonstrating the value of traditional tree censuses with drone remote sensing.

59 BASIC BIOLOGICAL SCIENCES↗

NASA NTRS1994

Measurement of Effective Canopy Temperature: The Missing Link to Modeling Transpiration in Controlled Environments

The objectives were to apply energy balance principles to plant canopies, and to determine which parameters are essential for predicting plant canopy transpiration (E) in controlled environments. Transpiration was accurately measured in a gas-exchange system. Absorbed radiation (R(sub abs)) by the canopy was measured with a net radiometer and calculated from short and long-wave radiation components. Average canopy foliar temperature T(sub L) can be measured with an infrared radiometer, but since T(sub L) is seldom uniform, a weighed average measurement of T(sub L) must be made. The effective canopy temperature T(sub C) is that temperature that balances the energy flux between absorbed radiation and latent heat L(sub E) and sensible heat (H) fluxes. TC should exactly equal air temperature T(sub A) when L(sub E) equals R(sub abs). When unnecessary thermal radiation from the lighting system is removed by a water filter, the magnitude of L(sub E) from transpiration approaches Rabs and T(sub C) is close to T(sub A). Unlike field models, we included the energy used in photosynthesis and found that up to 10% of Rabs was used in photosynthesis. We calculated aerodynamic conductance for H from measurements of wind speed and canopy height using the wind profile equation. Canopy aerodynamic conductance ranged from.03 to.04 m/s for wind speeds from.6 to 1 m/s; thus a 0.1 C canopy to air temperature difference results in a sensible heat flux of about 4 W/sq m, which is only 1% of R(sub abs). We examined the ability of wide angle infrared transducers to accurately integrate T(sub L) from the top to the bottom of the canopy. We measured evaporation from the hydroponic media to be approximately 1 micro mol/sq m s or 10% of R(sub abs). This result indicates that separating evaporation from transpiration is more important than exact measurement of canopy temperature.

Monje, O. A.↗

DOE OSTI2023

Topography and canopy cover influence soil organic carbon composition and distribution across a forested hillslope in the discontinuous permafrost zone

Abstract Topography and canopy cover influence ground temperature in warming permafrost landscapes, yet soil temperature heterogeneity introduced by mesotopographic slope positions, microtopographic differences in vegetation cover, and the subsequent impact of contrasting temperature conditions on soil organic carbon (SOC) dynamics are understudied. Buffering of permafrost‐affected soils against warming air temperatures in boreal forests can reflect surface soil characteristics (e.g., thickness of organic material) as well as the degree and type of canopy cover (e.g., open cover vs. closed cover). Both landscape and soil properties interact to determine meso‐ and microscale heterogeneity of ground warming. We sampled a hillslope catena transect in a discontinuous permafrost zone near Fairbanks, Alaska, to test the small‐scale (1 to 3 m) impacts of slope position and cover type on soil organic matter composition. Mineral active layer samples were collected from backslope, low backslope, and footslope positions at depths spanning 19 to 60 cm. We examined soil mineralogical composition, soil moisture, total carbon and nitrogen content, and organic mat thickness in conjunction with an assessment of SOC composition using Fourier‐transform ion cyclotron resonance mass spectrometry (FT‐ICR‐MS). Soils in the footslope position had a higher relative contribution of lignin‐like compounds, whereas backslope soils had more aliphatic and condensed aromatic compounds as determined using FT‐ICR‐MS. The effect of open versus closed tree canopy cover varied with the slope position. On the backslope, we found higher oxidation of molecules under open cover than closed cover, indicating an effect of warmer soil temperature on decomposition. Little to no effect of the canopy was observed in soils at the footslope position, which we attributed, in part, to the strong impact of soil moisture content in SOC dynamics in the water‐gathering footslope position. The thin organic mat under open cover on the backslope position may have contributed to differences in soil temperature and thus SOC oxidation under open and closed canopies. Here, the thinner organic mat did not appear to buffer the underlying soil against warm season air temperatures and thus increased SOC decomposition as indicated by the higher oxidation of SOC molecules and a lower contribution of simple molecules under open cover than the closed canopy sites. Our findings suggest that the role of canopy cover in SOC dynamics varies as a function of landscape position and soil properties, namely, organic mat thickness and soil moisture. Condition‐specific heterogeneity of SOC composition under open and closed canopy cover highlights the protective effect of canopy cover for soils on backslope positions.

54 ENVIRONMENTAL SCIENCES↗

NASA NTRS2013

Characterization of Canopy Layering in Forested Ecosystems Using Full Waveform Lidar

Canopy structure, the vertical distribution of canopy material, is an important element of forest ecosystem dynamics and habitat preference. Although vertical stratification, or "canopy layering," is a basic characterization of canopy structure for research and forest management, it is difficult to quantify at landscape scales. In this paper we describe canopy structure and develop methodologies to map forest vertical stratification in a mixed temperate forest using full-waveform lidar. Two definitions-one categorical and one continuous-are used to map canopy layering over Hubbard Brook Experimental Forest, New Hampshire with lidar data collected in 2009 by NASA's Laser Vegetation Imaging Sensor (LVIS). The two resulting canopy layering datasets describe variation of canopy layering throughout the forest and show that layering varies with terrain elevation and canopy height. This information should provide increased understanding of vertical structure variability and aid habitat characterization and other forest management activities.

lidar↗

DOE OSTI2022

Hyperspectral Reflectance for Measuring Canopy‐Level Nutrients and Photosynthesis in a Salt Marsh

Abstract Salt marsh ecosystems are underrepresented in process‐based models due to their unique location across the terrestrial–aquatic interface. Particularly, the role of leaf nutrients on canopy photosynthesis (F A ) remains unclear, despite their relevance for regulating vegetation growth. We combined multiyear information of canopy‐level nutrients and eddy covariance measurements with canopy surface hyperspectral remote sensing (CSHRS) to quantify the spatial and temporal variability of F A in a temperate salt marsh. We found that F A showed a positive relationship with canopy‐level N at the ecosystem scale and for areas dominated by Spartina cynosuroides , but not for areas dominated by short S. alterniflora . F A showed a positive relationship with canopy‐level P, K, and Na, but a negative relationship with Fe, for areas associated with S. cynosuroides , S. alterniflora , and at the ecosystem scale. We used partial least squares regression (PLSR) with CSHRS and found statistically significant data–model agreements to predict canopy‐level nutrients and F A . The red‐edge electromagnetic region and ∼770 nm showed the highest contribution of variance in PLSR models for canopy‐level nutrients and F A , but we propose that underlying sediment biogeochemistry can complicate interpretation of reflectance measurements. Our findings highlight the relevance of spatial variability in salt marshes vegetation and the promising application of CSHRS for linking information of canopy‐level nutrients with F A . We call for further development of canopy surface hyperspectral methods and analyses across salt marshes to improve our understanding of how these ecosystems will respond to global environmental change.

Environmental Sciences & Ecology↗

NASA NTRS1989

Anisotropy of thermal infrared exitance in sunflower canopies

Anisotropy of thermal infrared exitance above and within a relatively closed fully irrigated sunflower canopy is detailed. Azimuthal variation in thermal infrared exitance above canopies was weakly (statistically) related to solar position and was comparable to or larger than errors in satellite-based canopy estimates. Anisotropy within canopies was significantly lower and decreased with canopy closure and depth into the canopy. Measured azimuthal isotropy within canopies supports the use of this assumption in radiative transfer models. Significant differences in canopy temperature measurements were found depending upon whether the instruments were within or above the canopy. These differences could produce errors of 20-35 percent in latent energy estimates during periods of high evapotranspiration (ET) and greater errors in periods of restricted ET.

Tha Paw u, Kyaw↗