Negative Thermal Expansion Design Strategies in a Diverse Series of Metal–Organic Frameworks
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Little is known about how rising atmospheric [CO2] will impact long-term plant biomass or the dynamics of soil organic matter (SOM) in arid ecosystems. Evans et al. (1) reported higher soil organic carbon (SOC) and total nitrogen (N) concentrations following 10 years exposure to elevated atmospheric [CO2] at the Nevada Desert Free-Air-Carbon dioxide-Enrichment (FACE) Facility (NDFF). In this study, we investigated potential mechanisms that resulted in increased SOC and total N accumulation and SOM stabilization using high resolution mass spectrometry. Samples were collected from soil profiles to 1 m in depth with a 0.2 m increment under the dominant evergreen shrub Larrea tridentata. The differences in the molecular composition and diversity of SOM were more evident in surface soils and declined with depth, and were consistent with higher SOC and total N concentrations under elevated than ambient [CO2]. Our molecular analysis also suggested increased root exudation and/or microbial necromass from stabilization of labile C and N contributed to SOM and N stocks. Increased microbial activity and metabolism under elevated [CO2] compared to ambient treatments suggest that elevated [CO2] altered microbial carbon use patterns, reflecting changes in the quality and quantity of SOC inputs. We found that plant-derived compounds were primary substrates for microbial activity under elevated [CO2] and microbial products were the main constituents of stabilized SOM. Our results suggest that arid ecosystems are a potential large C sink under elevated [CO2], given the extensive coverage of the land surface, and that labile compounds are transformed to stable SOM via microbial processes. Arid systems are limited by water, and thus may have a different C storage potential under changing climates than other ecosystems that are limited by nitrogen or phosphorus.
The threat of asteroid impacts on Earth poses a low-probability but high consequence risk, with possible outcomes ranging from regional to global catastrophe. However, unique amongst such global threats we have the capability of averting such disasters. Diversion approaches by either kinetic impactor or nuclear energy deposition are the two most practical technologies for mitigating hazardous near Earth asteroids. One of the greatest challenges in understanding our options is the uncertain response of asteroids to such impulsive techniques, due both to our lack of knowledge of the composition and structure of these objects as well as their highly varied nature. Predicting whether we will simply divert or break up a given object is a crucial: the weak self-gravity and inferred weak structure of typical asteroids present the strong possibility the body will fragment for modest impulses. Predictive modeling of failure and fragmentation is one important tool for such studies. In this paper we apply advances in modeling failure and fracture using Adaptive Smoothed Particle Hydrodynamics (ASPH) to understand mega-cratering on asteroids as a validation exercise, and show examples of diverting the near Earth asteroid Bennu using both a kinetic impactor and ablative blow-off due to nuclear energy deposition.
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Hyper-cross-linked polymers (HCPs) are materials with permanent porosity that have potential applications in adsorption-based chemical separations. We use molecular simulations to predict the largest set of adsorption isotherms available to date for HCPs. Specifically, we predict room-temperature isotherms for 24 distinct molecules in 9 different HCPs that vary in both the monomer composition and cross-link density. This information allows us to develop efficient approximate models that predict adsorption isotherms in HCPs based only on the Henry’s constant for adsorption, textural information about the HCP, and bulk phase properties of the adsorbing molecule. This approximate approach will be useful in considering the adsorption of diverse groups of molecules in HCPs in the future. Our data also enables us to describe the selectivity of adsorption for the 276 binary mixtures that can be formed from the 24 molecules we simulated. Furthermore, this information greatly expands the information that is available about adsorption selectivity in HCPs.
Abstract Chemical signalling in the plant microbiome can have drastic effects on microbial community structure, and on host growth and development. Previously, we demonstrated that the auxin metabolic signal interference performed by the bacterial genus Variovorax via an auxin degradation locus was essential for maintaining stereotypic root development in an ecologically relevant bacterial synthetic community. Here, we dissect the Variovorax auxin degradation locus to define the genes iadDE as necessary and sufficient for indole-3-acetic acid (IAA) degradation and signal interference. We determine the crystal structures and binding properties of the operon’s MarR-family repressor with IAA and other auxins. Auxin degradation operons were identified across the bacterial tree of life and we define two distinct types on the basis of gene content and metabolic products: iac -like and iad -like. The structures of MarRs from representatives of each auxin degradation operon type establish that each has distinct IAA-binding pockets. Comparison of representative IAA-degrading strains from diverse bacterial genera colonizing Arabidopsis plants show that while all degrade IAA, only strains containing iad -like auxin-degrading operons interfere with auxin signalling in a complex synthetic community context. This suggests that iad -like operon-containing bacterial strains, including Variovorax species, play a key ecological role in modulating auxins in the plant microbiome.
We have demonstrated that spatial regulation of the same product from two distinct genes generates metabolite diversity.
DOE funds supported a key portion of the MBL Microbial Diversity (Woods Hole) program across 6 complete summers. The initial 4 years of the funded period were overseen by two co-Directors, Daniel Buckley (Cornell) and Steve Zinder (Cornell), who then completed their term. The final 2 summers were overseen by 2 new co-Directors, Jared R. Leadbetter (Caltech) and Dianne Newman (Caltech). The 6 funded summer iterations of the course included the incorporation of new themes such as single cell approaches applied to natural microbial communities (cell separation and sorting, genome amplification from single cells, and the use of Nano-SIMS to examine assimilation of carbon and nitrogen from isotopically labeled substrates into single cells), genetics and genomics on bacteria freshly isolated during the course of the programs, quantitative systems biology, and modern quantitative light microscopy.
The geometric and electronic ground-state structures of six MS 4 molecules (M = group-8 metals Fe, Ru, Os, Hs, Sm, and Pu) have been studied by using quantum-chemical density-functional and correlated wave-function approaches. The MS 4 species are compared to analogous MO 4 species recently investi-gated (Inorg. Chem. 2016, 55: 4616). Metal oxidation state (MOS) of high value VIII appears in low- spin singlet Td geometric species (Os,Hs)S 4 and (Ru,Os,Hs)O 4 , whereas low MOS=II appears in high- spin septet D 2d species Fe(S 2 ) 2 and (slightly excited) metastable Fe(O 2 ) 2 . The ground states of all other molecules have intermediate MOS values, containing S 2- , S 2 2- , S2 1- (and resp. O 2- -, O 1- , O 2 2- , O 2 1- ) ligands, bonded by ionic, covalent and correlative contributions.
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Endo-β1,4-glucanases in glycosyl hydrolase family 5 (GH5) are ubiquitous enzymes in the multicellular fungi and are common components of enzyme cocktails for biomass conversion. We recently showed that an endo-glucanase of subfamily 5 of GH5 (GH5_5) from Sporotrichum thermophile (StCel5A) was more effective at releasing glucose from pretreated corn stover, when part of an eight-component synthetic enzyme mixture, compared to its closely related counterpart from Trichoderma reesei, TrCel5A. StCel5A and TrCel5A belong to different clades of GH5_5 (GH5_5_1 and GH5_5_2, respectively). To test whether the superior activity of StCel5A was a general property of all enzymes in the GH5_5_2 clade, StCel5A, TrCel5A, and two additional members of each subfamily were expressed in a common host that had been engineered to suppress its native cellulases (T. reesei Δxyr1) and compared against each other alone on pure substrates, in synthetic mixtures on pure substrates, and against each other in synthetic mixtures on real biomass. In this work, the results indicated that superiority is a unique property of StCel5A and not of GH5_5_2 generally. The six Cel5A enzymes had significant differences in relative activities on different substrates, in specific activities, and in sensitivities to mannan inhibition. Importantly, the behavior of the six endo-glucanases on pure cellulose substrates did not predict their behavior in combination with other cellulolytic enzymes on a real lignocellulosic biomass substrate.
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